Wall clock time and date at job start Mon Mar 30 2020 07:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31777 * 122.74851 * 2 1 4 4 C 1.29025 * 117.12273 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.91544 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.46929 * 90.00232 * 5 4 3 7 7 C 1.46898 * 110.99888 * 66.04676 * 6 5 4 8 8 C 1.46902 * 110.99573 * 190.00042 * 6 5 4 9 9 H 1.09005 * 109.47428 * 55.00152 * 8 6 5 10 10 C 1.52998 * 109.47449 * 294.99873 * 8 6 5 11 11 C 1.53001 * 109.46897 * 174.99888 * 8 6 5 12 12 C 1.50700 * 109.47341 * 295.00242 * 11 8 6 13 13 H 1.08000 * 119.99724 * 359.97438 * 12 11 8 14 14 C 1.37880 * 120.00362 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00008 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47195 * 120.00407 * 16 14 12 19 19 H 1.48513 * 109.47006 * 239.99958 * 16 14 12 20 20 S 1.70976 * 110.16838 * 0.22854 * 4 3 2 21 21 C 1.33642 * 122.75119 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.03414 * 359.97438 * 21 2 1 23 23 H 1.09007 * 109.46754 * 89.97824 * 1 2 3 24 24 H 1.08998 * 109.47476 * 209.97744 * 1 2 3 25 25 H 1.09000 * 109.47445 * 329.97872 * 1 2 3 26 26 H 1.08998 * 109.46946 * 330.00459 * 5 4 3 27 27 H 1.09000 * 109.47319 * 210.00258 * 5 4 3 28 28 H 1.08997 * 109.47334 * 60.00212 * 7 6 5 29 29 H 1.09000 * 109.46674 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47296 * 299.99911 * 7 6 5 31 31 H 1.09005 * 109.47033 * 300.00521 * 10 8 6 32 32 H 1.08995 * 109.47107 * 59.99993 * 10 8 6 33 33 H 1.08999 * 109.47381 * 180.02562 * 10 8 6 34 34 H 1.09000 * 109.47042 * 55.00014 * 11 8 6 35 35 H 1.09001 * 109.47470 * 174.99940 * 11 8 6 36 36 H 0.96998 * 119.99505 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.46740 * 89.99955 * 22 21 2 38 38 H 1.08997 * 109.46971 * 209.99623 * 22 21 2 39 39 H 1.09001 * 109.47277 * 329.99585 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8024 2.4994 1.3837 7 6 5.5280 1.4193 2.0654 8 6 5.5632 3.7553 1.4292 9 1 5.0119 4.5335 0.9013 10 6 6.9242 3.5517 0.7607 11 6 5.7683 4.1747 2.8862 12 6 4.4339 4.4940 3.5097 13 1 3.5301 4.4069 2.9250 14 6 4.3670 4.8974 4.8265 15 7 5.4678 5.0039 5.5382 16 14 2.7131 5.2938 5.5990 17 1 1.6376 5.0981 4.5939 18 1 2.4791 4.3939 6.7568 19 1 2.7079 6.7054 6.0604 20 16 3.9332 -0.6731 -0.0075 21 6 2.2300 -1.1240 -0.0005 22 6 1.6847 -2.5289 -0.0006 23 1 -0.3633 0.0004 -1.0278 24 1 -0.3634 -0.8901 0.5135 25 1 -0.3634 0.8898 0.5142 26 1 4.0431 2.9816 -0.5149 27 1 5.3958 1.8247 -0.5153 28 1 6.4583 1.2155 1.5353 29 1 5.7511 1.7211 3.0888 30 1 4.9125 0.5198 2.0783 31 1 7.4755 2.7735 1.2886 32 1 6.7781 3.2528 -0.2772 33 1 7.4889 4.4834 0.7949 34 1 6.2404 3.3604 3.4357 35 1 6.4073 5.0570 2.9239 36 1 5.4208 5.2880 6.4645 37 1 1.5528 -2.8673 -1.0283 38 1 2.3831 -3.1897 0.5128 39 1 0.7237 -2.5457 0.5137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697872305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:49 Heat of formation + Delta-G solvation = 18.516330 kcal Electronic energy + Delta-G solvation = -18543.339564 eV Core-core repulsion = 15804.765773 eV Total energy + Delta-G solvation = -2738.573791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94839 -39.38970 -35.27827 -34.31779 -32.42981 -30.62108 -29.38269 -28.98551 -26.63018 -25.74705 -24.99159 -22.93351 -20.42062 -19.70729 -18.83432 -18.37713 -17.32406 -16.66147 -16.16744 -15.82703 -15.62013 -15.02388 -14.69026 -14.32388 -14.08585 -13.99274 -13.76287 -13.70810 -13.52853 -13.28458 -13.08738 -12.96254 -12.87852 -12.68187 -12.47339 -12.36310 -12.26136 -11.96317 -11.84166 -11.10371 -11.09006 -10.50865 -10.48689 -10.08190 -9.52461 -8.98535 -8.11874 -6.15441 -0.26579 0.41417 0.78689 1.37312 1.38771 1.52475 1.81704 2.45680 3.05552 3.20688 3.31240 3.96778 4.06878 4.16732 4.20201 4.24648 4.35715 4.45134 4.56662 4.59548 4.60370 4.68994 4.71918 4.80106 4.94531 4.96155 5.04739 5.06114 5.11881 5.20245 5.26115 5.44846 5.48699 5.69526 5.89199 6.26529 6.29279 6.47362 6.90104 6.98314 7.50190 9.00080 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.005626 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.261864 B = 4975.592085 C = 5916.988021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.031 3.969 3 N -0.491 5.491 4 C 0.046 3.954 5 C 0.131 3.869 6 N -0.531 5.531 7 C 0.026 3.974 8 C 0.097 3.903 9 H 0.066 0.934 10 C -0.176 4.176 11 C 0.034 3.966 12 C -0.499 4.499 13 H 0.050 0.950 14 C -0.001 4.001 15 N -0.937 5.937 16 Si 0.950 3.050 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.278 1.278 20 S 0.132 5.868 21 C -0.229 4.229 22 C -0.072 4.072 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.003 0.997 35 H -0.002 1.002 36 H 0.259 0.741 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -15.603 -14.463 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 N -0.206 5.206 4 C -0.232 4.232 5 C 0.000 4.000 6 N -0.256 5.256 7 C -0.122 4.122 8 C -0.011 4.011 9 H 0.084 0.916 10 C -0.234 4.234 11 C -0.003 4.003 12 C -0.537 4.537 13 H 0.068 0.932 14 C -0.197 4.197 15 N -0.579 5.579 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.204 1.204 20 S 0.388 5.612 21 C -0.350 4.350 22 C -0.131 4.131 23 H 0.106 0.894 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.022 0.978 35 H 0.016 0.984 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.123 -15.470 -14.068 21.313 hybrid contribution -0.710 0.630 0.562 1.103 sum -4.833 -14.840 -13.506 20.640 Atomic orbital electron populations 1.20423 0.85607 1.03649 1.03601 1.20685 0.99534 0.86246 1.03556 1.66088 1.05564 1.33162 1.15788 1.26850 0.93944 0.98660 1.03754 1.20641 0.94514 0.93807 0.91059 1.61891 1.46638 1.03596 1.13462 1.22409 0.96495 0.93789 0.99505 1.21662 0.91911 0.90083 0.97469 0.91597 1.22409 0.97917 1.02487 1.00618 1.19105 0.95448 0.94722 0.91018 1.21498 0.94180 1.41950 0.96093 0.93163 1.25757 0.99397 0.96382 0.98167 1.70078 1.28615 1.50183 1.09017 0.85616 0.80767 0.77743 0.78215 1.19737 1.20835 1.20371 1.83597 1.07533 1.01765 1.68332 1.26186 0.94710 1.02231 1.11838 1.20391 1.01800 0.86764 1.04102 0.89438 0.88488 0.92204 0.88874 0.90771 0.93843 0.92684 0.92113 0.92595 0.91106 0.91984 0.97833 0.98403 0.93225 0.88904 0.90344 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.06 71.24 0.72 -0.83 16 2 C 0.03 0.87 6.74 41.52 0.28 1.15 16 3 N -0.49 -17.12 10.53 -179.40 -1.89 -19.01 16 4 C 0.05 1.48 6.16 88.52 0.55 2.03 16 5 C 0.13 4.16 4.98 85.56 0.43 4.59 16 6 N -0.53 -20.75 4.46 -901.60 -4.02 -24.77 16 7 C 0.03 0.95 8.47 127.69 1.08 2.04 16 8 C 0.10 3.94 2.29 44.91 0.10 4.05 16 9 H 0.07 2.76 8.03 -2.38 -0.02 2.74 16 10 C -0.18 -5.60 8.50 71.98 0.61 -4.98 16 11 C 0.03 1.79 4.27 29.85 0.13 1.92 16 12 C -0.50 -29.16 8.84 25.60 0.23 -28.93 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.95 47.12 29.54 68.60 2.03 49.15 16 17 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 20 S 0.13 3.30 21.68 -56.49 -1.22 2.08 16 21 C -0.23 -5.37 6.59 24.64 0.16 -5.20 16 22 C -0.07 -1.01 10.10 71.24 0.72 -0.29 16 23 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.10 1.49 6.72 -2.39 -0.02 1.47 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.09 3.02 8.00 -2.39 -0.02 3.00 16 27 H 0.07 1.94 6.94 -2.39 -0.02 1.93 16 28 H 0.04 1.34 6.51 -2.39 -0.02 1.32 16 29 H 0.05 2.37 6.03 -2.39 -0.01 2.36 16 30 H 0.06 2.08 6.07 -2.39 -0.01 2.06 16 31 H 0.06 1.76 6.48 -2.38 -0.02 1.75 16 32 H 0.07 1.84 6.75 -2.39 -0.02 1.82 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.00 0.19 6.10 -2.39 -0.01 0.18 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.07 6.76 -2.39 -0.02 1.06 16 Total: -1.00 -70.60 322.56 1.68 -68.93 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.03 Total: 5.41 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.46 Total: -24.08 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -5.62 Total: -101.48 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.22 Total: 2.08 kcal Total: -70.60 1.68 -68.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697872305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.441 kcal (2) G-P(sol) polarization free energy of solvation -70.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds