Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47518 * 2 1 4 4 H 1.09003 * 109.47288 * 319.76419 * 3 2 1 5 5 C 1.50696 * 109.47567 * 199.76434 * 3 2 1 6 6 H 1.08003 * 120.00370 * 245.27809 * 5 3 2 7 7 C 1.37881 * 120.00061 * 65.26841 * 5 3 2 8 8 N 1.31520 * 119.99810 * 5.94983 * 7 5 3 9 9 Si 1.86803 * 120.00326 * 185.94629 * 7 5 3 10 10 H 1.48492 * 109.47116 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46931 * 300.00691 * 9 7 5 12 12 H 1.48503 * 109.46839 * 60.00080 * 9 7 5 13 13 N 1.46898 * 109.47423 * 79.76368 * 3 2 1 14 14 C 1.46903 * 110.99803 * 55.96809 * 13 3 2 15 15 C 1.46906 * 110.99716 * 292.02147 * 13 3 2 16 16 C 1.50710 * 109.46909 * 200.47141 * 15 13 3 17 17 C 1.38224 * 120.40891 * 269.72294 * 16 15 13 18 18 N 1.31852 * 120.79208 * 179.70356 * 17 16 15 19 19 C 1.31878 * 121.73915 * 0.58484 * 18 17 16 20 20 C 1.38313 * 120.74055 * 359.69889 * 19 18 17 21 21 Cl 1.73605 * 120.43065 * 179.97438 * 20 19 18 22 22 C 1.38604 * 120.41186 * 89.99515 * 16 15 13 23 23 H 1.09002 * 109.46695 * 300.02380 * 1 2 3 24 24 H 1.09000 * 109.47016 * 60.02041 * 1 2 3 25 25 H 1.08992 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46663 * 239.99910 * 2 1 3 27 27 H 1.09003 * 109.46973 * 120.00795 * 2 1 3 28 28 H 0.96995 * 119.99737 * 355.22070 * 8 7 5 29 29 H 1.08992 * 109.47090 * 60.00378 * 14 13 3 30 30 H 1.09008 * 109.46925 * 180.02562 * 14 13 3 31 31 H 1.08997 * 109.47461 * 300.00224 * 14 13 3 32 32 H 1.09003 * 109.47140 * 320.46641 * 15 13 3 33 33 H 1.08998 * 109.47443 * 80.47361 * 15 13 3 34 34 H 1.08002 * 119.60858 * 359.97438 * 17 16 15 35 35 H 1.07993 * 119.63243 * 179.68318 * 19 18 17 36 36 H 1.08005 * 120.79785 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.4216 2.0465 -0.6638 5 6 3.4682 1.4703 -0.4804 6 1 4.2581 1.7731 0.1910 7 6 3.7665 1.1090 -1.7772 8 7 2.7969 0.8533 -2.6282 9 14 5.5478 0.9830 -2.3255 10 1 5.5987 0.5812 -3.7541 11 1 6.2115 2.3008 -2.1584 12 1 6.2491 -0.0327 -1.4998 13 7 1.9714 1.9861 1.3629 14 6 2.7171 1.1410 2.3051 15 6 0.5767 2.1512 1.7940 16 6 0.5158 3.1396 2.9302 17 6 0.6181 2.7079 4.2393 18 7 0.5716 3.5666 5.2388 19 6 0.4156 4.8602 5.0353 20 6 0.3005 5.3654 3.7528 21 17 0.0947 7.0697 3.4943 22 6 0.3510 4.4920 2.6755 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.8750 0.8509 -2.3265 29 1 3.7625 1.0925 2.0006 30 1 2.6494 1.5662 3.3065 31 1 2.2923 0.1372 2.3074 32 1 -0.0203 2.5195 0.9597 33 1 0.1831 1.1907 2.1266 34 1 0.7419 1.6551 4.4459 35 1 0.3771 5.5327 5.8794 36 1 0.2643 4.8575 1.6629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703039110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = 35.262848 kcal Electronic energy + Delta-G solvation = -18450.765842 eV Core-core repulsion = 15575.041434 eV Total energy + Delta-G solvation = -2875.724409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33904 -37.95765 -36.67898 -33.80879 -32.31983 -31.36999 -30.76221 -27.41540 -26.53649 -24.16581 -23.52542 -22.87473 -21.19602 -19.57893 -17.24960 -16.90762 -16.70833 -15.78706 -15.65036 -14.29820 -14.15061 -13.98801 -13.72341 -13.16177 -13.11917 -12.76442 -12.44741 -12.12572 -12.02590 -11.80975 -11.68064 -11.27402 -11.08337 -10.90590 -10.69611 -10.65463 -10.25269 -10.10257 -9.82527 -9.62798 -9.56340 -8.90590 -8.59163 -8.29787 -7.34877 -6.37264 -4.08899 0.90224 1.16770 1.95585 3.42846 3.43744 3.62137 3.63436 4.36148 4.49077 4.70164 4.73123 4.91094 4.98503 5.14280 5.33432 5.46752 5.62062 5.80250 5.86959 5.90493 5.97342 5.99091 6.12969 6.13885 6.28495 6.47653 6.53515 6.62288 6.75315 6.85403 7.04960 7.33220 7.72802 7.79093 7.97395 8.28902 8.53676 8.84462 9.60838 10.99938 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004909 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.593322 B = 5702.299954 C = 6157.674928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C 0.206 3.794 4 H 0.033 0.967 5 C -0.582 4.582 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.520 5.520 14 C 0.028 3.972 15 C 0.085 3.915 16 C -0.096 4.096 17 C 0.103 3.897 18 N -0.471 5.471 19 C 0.099 3.901 20 C -0.087 4.087 21 Cl -0.063 7.063 22 C -0.050 4.050 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.271 0.729 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 5.114 11.778 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.202 4.202 3 C 0.100 3.900 4 H 0.051 0.949 5 C -0.621 4.621 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.549 5.549 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.243 5.243 14 C -0.120 4.120 15 C -0.044 4.044 16 C -0.099 4.099 17 C -0.054 4.054 18 N -0.179 5.179 19 C -0.059 4.059 20 C -0.116 4.116 21 Cl -0.034 7.034 22 C -0.076 4.076 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.213 5.128 11.266 13.431 hybrid contribution -1.422 -0.042 0.401 1.479 sum -6.635 5.085 11.667 14.353 Atomic orbital electron populations 1.22282 0.98584 1.00192 1.01300 1.22448 0.92983 1.02580 1.02181 1.19522 0.97904 0.88792 0.83781 0.94913 1.21882 0.91836 1.48700 0.99652 0.92595 1.25728 1.05907 0.93963 0.92841 1.70799 1.01133 1.46617 1.36399 0.83555 0.74189 0.76538 0.76131 1.20890 1.21477 1.21530 1.62296 1.07832 1.50100 1.04096 1.22386 1.00488 0.94403 0.94758 1.21363 0.93446 0.95161 0.94387 1.21117 0.97573 0.94665 0.96554 1.22784 0.95004 0.99705 0.87920 1.67801 1.12116 1.02477 1.35543 1.22664 0.96568 0.92182 0.94455 1.22095 1.07134 0.86175 0.96199 1.98370 1.95699 1.12377 1.96976 1.21477 0.94985 0.92069 0.99120 0.92678 0.93304 0.94432 0.90822 0.93144 0.91789 0.90484 0.93717 0.95771 0.90113 0.92903 0.82513 0.82278 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.31 37.16 0.35 -2.62 16 2 C -0.16 -3.47 4.75 -26.73 -0.13 -3.60 16 3 C 0.21 4.77 1.55 -68.87 -0.11 4.67 16 4 H 0.03 0.84 7.22 -51.93 -0.38 0.46 16 5 C -0.58 -15.42 7.99 -34.44 -0.28 -15.69 16 6 H 0.06 1.51 6.77 -52.48 -0.36 1.16 16 7 C 0.02 0.54 5.06 -17.82 -0.09 0.45 16 8 N -0.91 -26.19 13.03 55.43 0.72 -25.47 16 9 Si 1.07 24.52 29.91 -169.99 -5.08 19.43 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.52 -10.26 4.63 -237.73 -1.10 -11.36 16 14 C 0.03 0.51 8.71 60.07 0.52 1.03 16 15 C 0.08 1.36 3.38 -4.97 -0.02 1.35 16 16 C -0.10 -1.40 5.16 -104.49 -0.54 -1.94 16 17 C 0.10 1.42 9.51 -17.55 -0.17 1.25 16 18 N -0.47 -6.57 10.36 -13.22 -0.14 -6.71 16 19 C 0.10 1.25 10.99 -17.50 -0.19 1.05 16 20 C -0.09 -1.12 6.34 -39.35 -0.25 -1.37 16 21 Cl -0.06 -0.73 28.99 -51.86 -1.50 -2.23 16 22 C -0.05 -0.70 9.67 -39.25 -0.38 -1.08 16 23 H 0.05 0.87 4.08 -51.93 -0.21 0.66 16 24 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.81 6.24 -51.93 -0.32 1.48 16 27 H 0.05 1.04 5.43 -51.93 -0.28 0.76 16 28 H 0.27 7.65 6.03 -40.82 -0.25 7.41 16 29 H 0.08 1.55 6.62 -51.93 -0.34 1.21 16 30 H 0.04 0.72 6.24 -51.92 -0.32 0.39 16 31 H 0.02 0.42 5.85 -51.93 -0.30 0.12 16 32 H 0.08 1.31 7.33 -51.93 -0.38 0.93 16 33 H 0.05 0.80 5.84 -51.93 -0.30 0.49 16 34 H 0.16 1.90 7.80 -52.49 -0.41 1.49 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -28.35 298.50 -8.23 -36.58 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.35 Total: 1.77 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.27 Total: -16.51 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.52 Total: -43.54 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.35 -8.23 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703039110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.842 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds