Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47518 * 2 1 4 4 H 1.09003 * 109.47288 * 319.76419 * 3 2 1 5 5 C 1.50696 * 109.47567 * 199.76434 * 3 2 1 6 6 H 1.08003 * 120.00370 * 245.27809 * 5 3 2 7 7 C 1.37881 * 120.00061 * 65.26841 * 5 3 2 8 8 N 1.31520 * 119.99810 * 5.94983 * 7 5 3 9 9 Si 1.86803 * 120.00326 * 185.94629 * 7 5 3 10 10 H 1.48492 * 109.47116 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46931 * 300.00691 * 9 7 5 12 12 H 1.48503 * 109.46839 * 60.00080 * 9 7 5 13 13 N 1.46898 * 109.47423 * 79.76368 * 3 2 1 14 14 C 1.46903 * 110.99803 * 55.96809 * 13 3 2 15 15 C 1.46906 * 110.99716 * 292.02147 * 13 3 2 16 16 C 1.50710 * 109.46909 * 200.47141 * 15 13 3 17 17 C 1.38224 * 120.40891 * 269.72294 * 16 15 13 18 18 N 1.31852 * 120.79208 * 179.70356 * 17 16 15 19 19 C 1.31878 * 121.73915 * 0.58484 * 18 17 16 20 20 C 1.38313 * 120.74055 * 359.69889 * 19 18 17 21 21 Cl 1.73605 * 120.43065 * 179.97438 * 20 19 18 22 22 C 1.38604 * 120.41186 * 89.99515 * 16 15 13 23 23 H 1.09002 * 109.46695 * 300.02380 * 1 2 3 24 24 H 1.09000 * 109.47016 * 60.02041 * 1 2 3 25 25 H 1.08992 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46663 * 239.99910 * 2 1 3 27 27 H 1.09003 * 109.46973 * 120.00795 * 2 1 3 28 28 H 0.96995 * 119.99737 * 355.22070 * 8 7 5 29 29 H 1.08992 * 109.47090 * 60.00378 * 14 13 3 30 30 H 1.09008 * 109.46925 * 180.02562 * 14 13 3 31 31 H 1.08997 * 109.47461 * 300.00224 * 14 13 3 32 32 H 1.09003 * 109.47140 * 320.46641 * 15 13 3 33 33 H 1.08998 * 109.47443 * 80.47361 * 15 13 3 34 34 H 1.08002 * 119.60858 * 359.97438 * 17 16 15 35 35 H 1.07993 * 119.63243 * 179.68318 * 19 18 17 36 36 H 1.08005 * 120.79785 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.4216 2.0465 -0.6638 5 6 3.4682 1.4703 -0.4804 6 1 4.2581 1.7731 0.1910 7 6 3.7665 1.1090 -1.7772 8 7 2.7969 0.8533 -2.6282 9 14 5.5478 0.9830 -2.3255 10 1 5.5987 0.5812 -3.7541 11 1 6.2115 2.3008 -2.1584 12 1 6.2491 -0.0327 -1.4998 13 7 1.9714 1.9861 1.3629 14 6 2.7171 1.1410 2.3051 15 6 0.5767 2.1512 1.7940 16 6 0.5158 3.1396 2.9302 17 6 0.6181 2.7079 4.2393 18 7 0.5716 3.5666 5.2388 19 6 0.4156 4.8602 5.0353 20 6 0.3005 5.3654 3.7528 21 17 0.0947 7.0697 3.4943 22 6 0.3510 4.4920 2.6755 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.8750 0.8509 -2.3265 29 1 3.7625 1.0925 2.0006 30 1 2.6494 1.5662 3.3065 31 1 2.2923 0.1372 2.3074 32 1 -0.0203 2.5195 0.9597 33 1 0.1831 1.1907 2.1266 34 1 0.7419 1.6551 4.4459 35 1 0.3771 5.5327 5.8794 36 1 0.2643 4.8575 1.6629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703039110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = 18.230689 kcal Electronic energy + Delta-G solvation = -18451.504412 eV Core-core repulsion = 15575.041434 eV Total energy + Delta-G solvation = -2876.462979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42862 -39.51292 -37.65577 -35.44148 -33.73143 -32.76200 -32.11336 -28.90933 -28.12784 -25.80016 -24.70231 -24.33678 -22.51446 -21.31034 -18.85996 -18.21091 -17.78602 -17.29981 -16.88448 -15.76758 -15.56848 -15.47433 -15.24669 -14.56219 -14.21448 -14.13973 -13.94806 -13.72521 -13.38924 -13.10438 -13.01464 -12.80306 -12.52453 -12.41660 -12.21460 -12.15575 -12.03538 -11.90999 -11.44445 -10.77899 -10.66781 -10.48605 -10.34284 -9.92580 -8.89408 -8.52340 -6.23557 -0.13317 0.09069 0.96933 1.55439 1.61595 1.80744 2.54066 2.61543 3.23644 3.32916 3.47333 3.66049 3.72632 3.89878 3.94888 4.21088 4.33275 4.38088 4.45501 4.53121 4.57849 4.67569 4.71783 4.87393 4.88218 5.12250 5.15524 5.17477 5.19282 5.32948 5.44711 5.60973 5.93525 6.13298 6.49896 6.55560 6.76003 6.78949 7.53565 8.86097 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004909 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.593322 B = 5702.299954 C = 6157.674928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C 0.212 3.788 4 H 0.003 0.997 5 C -0.590 4.590 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.939 5.939 9 Si 1.108 2.892 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.273 1.273 13 N -0.535 5.535 14 C 0.034 3.966 15 C 0.092 3.908 16 C -0.108 4.108 17 C 0.105 3.895 18 N -0.483 5.483 19 C 0.105 3.895 20 C -0.090 4.090 21 Cl -0.051 7.051 22 C -0.059 4.059 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 5.331 13.664 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.104 3.896 4 H 0.021 0.979 5 C -0.628 4.628 6 H 0.064 0.936 7 C -0.226 4.226 8 N -0.577 5.577 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.198 1.198 13 N -0.258 5.258 14 C -0.114 4.114 15 C -0.036 4.036 16 C -0.111 4.111 17 C -0.052 4.052 18 N -0.191 5.191 19 C -0.053 4.053 20 C -0.119 4.119 21 Cl -0.022 7.022 22 C -0.086 4.086 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.191 0.809 35 H 0.204 0.796 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.479 5.353 13.181 15.245 hybrid contribution -1.381 -0.009 -0.101 1.384 sum -6.859 5.344 13.080 15.706 Atomic orbital electron populations 1.22190 0.95729 1.01618 1.01942 1.22243 0.95517 1.00770 1.00715 1.19245 0.95520 0.89464 0.85330 0.97890 1.22216 0.93466 1.47642 0.99517 0.93630 1.26927 1.08615 0.93549 0.93473 1.70890 1.01118 1.48728 1.36952 0.83019 0.70748 0.77351 0.75710 1.21298 1.20374 1.19808 1.62136 1.10542 1.50281 1.02850 1.22327 0.98846 0.94885 0.95367 1.21283 0.91107 0.96414 0.94833 1.20933 0.99310 0.94443 0.96366 1.23006 0.94224 1.00579 0.87406 1.67882 1.12651 1.03050 1.35522 1.23118 0.94911 0.92182 0.95099 1.22123 1.06936 0.86726 0.96072 1.98376 1.95604 1.11277 1.96967 1.21567 0.95130 0.92373 0.99500 0.90351 0.94391 0.92582 0.94467 0.92278 0.92731 0.92951 0.91255 0.94922 0.90753 0.91337 0.80877 0.79642 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 9.31 71.98 0.67 -4.78 16 2 C -0.15 -6.54 4.75 30.59 0.15 -6.39 16 3 C 0.21 9.93 1.55 44.17 0.07 10.00 16 4 H 0.00 0.17 7.22 -2.39 -0.02 0.15 16 5 C -0.59 -31.80 7.99 25.60 0.20 -31.59 16 6 H 0.05 2.50 6.77 -2.91 -0.02 2.48 16 7 C -0.03 -1.50 5.06 84.65 0.43 -1.07 16 8 N -0.94 -55.26 13.03 21.45 0.28 -54.99 16 9 Si 1.11 49.75 29.91 68.60 2.05 51.81 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.54 -20.81 4.63 -906.03 -4.20 -25.01 16 14 C 0.03 1.18 8.71 127.69 1.11 2.30 16 15 C 0.09 2.81 3.38 85.56 0.29 3.10 16 16 C -0.11 -2.95 5.16 -19.78 -0.10 -3.05 16 17 C 0.10 2.61 9.51 84.69 0.81 3.42 16 18 N -0.48 -12.15 10.36 -195.75 -2.03 -14.18 16 19 C 0.10 2.35 10.99 84.70 0.93 3.28 16 20 C -0.09 -2.14 6.34 22.42 0.14 -2.00 16 21 Cl -0.05 -1.08 28.99 -2.72 -0.08 -1.16 16 22 C -0.06 -1.58 9.67 22.49 0.22 -1.36 16 23 H 0.08 2.32 4.08 -2.39 -0.01 2.31 16 24 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.85 6.24 -2.39 -0.01 1.84 16 27 H 0.06 2.38 5.43 -2.39 -0.01 2.37 16 28 H 0.26 15.38 6.03 -92.71 -0.56 14.83 16 29 H 0.05 2.08 6.62 -2.39 -0.02 2.07 16 30 H 0.07 2.07 6.24 -2.38 -0.01 2.06 16 31 H 0.03 1.08 5.85 -2.39 -0.01 1.07 16 32 H 0.07 2.37 7.33 -2.39 -0.02 2.35 16 33 H 0.07 1.89 5.84 -2.39 -0.01 1.87 16 34 H 0.17 3.64 7.80 -2.91 -0.02 3.62 16 35 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -61.23 298.50 2.24 -58.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.30 Total: 12.69 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.91 Total: -28.15 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -5.95 Total: -94.17 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.81 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -61.23 2.24 -58.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703039110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.221 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds