Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 H 1.09003 * 109.47700 * 177.80497 * 3 2 1 5 5 C 1.50696 * 109.47221 * 297.80578 * 3 2 1 6 6 H 1.08007 * 120.00446 * 119.99619 * 5 3 2 7 7 C 1.37881 * 120.00192 * 300.00024 * 5 3 2 8 8 N 1.31515 * 119.99609 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00496 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47017 * 59.99643 * 9 7 5 11 11 H 1.48497 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46918 * 299.99855 * 9 7 5 13 13 N 1.46909 * 109.47233 * 57.80393 * 3 2 1 14 14 C 1.46901 * 110.99870 * 185.14501 * 13 3 2 15 15 C 1.46894 * 110.99604 * 61.19233 * 13 3 2 16 16 C 1.50706 * 109.47009 * 195.63506 * 15 13 3 17 17 C 1.38233 * 120.40789 * 269.72764 * 16 15 13 18 18 N 1.31860 * 120.78804 * 179.70137 * 17 16 15 19 19 C 1.31871 * 121.73814 * 0.58410 * 18 17 16 20 20 C 1.38309 * 120.74725 * 359.70350 * 19 18 17 21 21 Cl 1.73599 * 120.43330 * 179.97438 * 20 19 18 22 22 C 1.38600 * 120.41377 * 89.99992 * 16 15 13 23 23 H 1.09002 * 109.47117 * 176.25587 * 1 2 3 24 24 H 1.09003 * 109.46945 * 56.26095 * 1 2 3 25 25 H 1.08993 * 109.47448 * 296.25569 * 1 2 3 26 26 H 1.09001 * 109.47101 * 119.99614 * 2 1 3 27 27 H 1.08998 * 109.47832 * 239.99922 * 2 1 3 28 28 H 0.97005 * 120.00170 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46836 * 60.00298 * 14 13 3 30 30 H 1.09005 * 109.46620 * 179.97438 * 14 13 3 31 31 H 1.08989 * 109.47507 * 299.99811 * 14 13 3 32 32 H 1.09003 * 109.47618 * 315.63341 * 15 13 3 33 33 H 1.09001 * 109.47393 * 75.63657 * 15 13 3 34 34 H 1.07995 * 119.60976 * 359.97267 * 17 16 15 35 35 H 1.07995 * 119.62924 * 179.72683 * 19 18 17 36 36 H 1.08001 * 120.79405 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0394 5 6 1.5825 2.1370 -1.2567 6 1 0.9586 3.0162 -1.1914 7 6 1.9605 1.6501 -2.4901 8 7 2.7206 0.5798 -2.5697 9 14 1.3942 2.5114 -4.0479 10 1 1.8897 3.9113 -4.0476 11 1 1.9318 1.7956 -5.2327 12 1 -0.0899 2.5116 -4.1018 13 7 1.5074 2.1502 1.1721 14 6 1.8765 3.5717 1.1412 15 6 1.9570 1.5165 2.4187 16 6 1.1099 2.0060 3.5650 17 6 1.4831 3.1276 4.2816 18 7 0.7445 3.5659 5.2822 19 6 -0.3649 2.9528 5.6460 20 6 -0.7986 1.8211 4.9795 21 17 -2.2599 1.0200 5.4658 22 6 -0.0500 1.3340 3.9173 23 1 -0.3633 -1.0255 -0.0671 24 1 -0.3633 0.5708 -0.8546 25 1 -0.3634 0.4546 0.9216 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.9862 0.2370 -3.4374 29 1 1.4711 4.0329 0.2406 30 1 1.4692 4.0719 2.0199 31 1 2.9623 3.6653 1.1401 32 1 1.8602 0.4342 2.3317 33 1 3.0001 1.7744 2.6018 34 1 2.3880 3.6538 4.0162 35 1 -0.9415 3.3388 6.4735 36 1 -0.3640 0.4527 3.3777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703039111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = 30.617771 kcal Electronic energy + Delta-G solvation = -18501.103032 eV Core-core repulsion = 15625.177197 eV Total energy + Delta-G solvation = -2875.925834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.27442 -37.39671 -36.62689 -33.67222 -32.25624 -31.31985 -30.73603 -27.22988 -26.23553 -24.41803 -23.57589 -22.48305 -21.40361 -18.98775 -17.13379 -16.68496 -16.30875 -15.58759 -15.27214 -14.56789 -14.12844 -13.92991 -13.67309 -13.14734 -13.01584 -12.57144 -12.22678 -12.03413 -11.91267 -11.88279 -11.39565 -11.17272 -10.99474 -10.92333 -10.77754 -10.27461 -10.12794 -9.82828 -9.58566 -9.49329 -9.43227 -8.92235 -8.78832 -8.44212 -7.27729 -6.05770 -4.09763 0.94881 1.21763 1.99159 3.28942 3.33931 3.36632 3.68160 4.36854 4.41601 4.76112 4.79505 4.98749 5.06241 5.22104 5.30235 5.54738 5.76049 5.95026 6.00417 6.10141 6.25131 6.36729 6.45562 6.50069 6.57159 6.69536 6.75485 7.05102 7.22881 7.33172 7.58470 7.66089 7.77812 7.84019 8.06526 8.25902 8.50121 8.94707 9.54504 11.00544 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.004876 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.484719 B = 5741.620477 C = 6124.399075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.034 3.966 15 C 0.084 3.916 16 C -0.092 4.092 17 C 0.103 3.897 18 N -0.472 5.472 19 C 0.098 3.902 20 C -0.088 4.088 21 Cl -0.064 7.064 22 C -0.050 4.050 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.013 0.987 27 H 0.094 0.906 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 0.992 13.271 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.115 4.115 15 C -0.044 4.044 16 C -0.095 4.095 17 C -0.054 4.054 18 N -0.180 5.180 19 C -0.060 4.060 20 C -0.117 4.117 21 Cl -0.036 7.036 22 C -0.076 4.076 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.543 1.518 13.583 14.403 hybrid contribution 0.165 -0.368 -1.333 1.393 sum -4.378 1.150 12.250 13.060 Atomic orbital electron populations 1.21468 0.97234 0.97626 1.01520 1.21608 0.95192 0.98155 1.00140 1.19308 0.92549 0.90828 0.86142 0.98292 1.21025 1.31223 1.12018 0.89567 0.91944 1.24888 0.95111 0.95045 0.98941 1.69857 1.36082 1.22467 1.24675 0.86624 0.79083 0.79574 0.82527 1.20369 1.21377 1.20235 1.62147 1.59926 1.02136 1.00995 1.22291 0.97497 0.90189 1.01484 1.21096 0.94317 1.00486 0.88549 1.21051 0.95726 0.95498 0.97201 1.22820 0.98700 0.93251 0.90662 1.67804 1.05076 1.30249 1.14871 1.22648 0.93434 0.91073 0.98816 1.22092 0.91706 0.97947 0.99920 1.98367 1.34907 1.79277 1.91002 1.21477 0.92697 0.99924 0.93551 0.96491 0.92199 0.94199 0.96806 0.88780 0.92892 0.90361 0.93925 0.96709 0.89294 0.94290 0.82464 0.82367 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.15 0.35 -2.17 16 2 C -0.11 -2.53 5.16 -26.74 -0.14 -2.66 16 3 C 0.22 5.07 1.76 -68.86 -0.12 4.95 16 4 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 5 C -0.50 -12.81 6.71 -34.44 -0.23 -13.04 16 6 H 0.06 1.62 6.31 -52.48 -0.33 1.28 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.31 11.31 55.43 0.63 -23.69 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.53 -10.36 3.78 -237.73 -0.90 -11.26 16 14 C 0.03 0.63 8.98 60.07 0.54 1.16 16 15 C 0.08 1.38 5.01 -4.98 -0.02 1.36 16 16 C -0.09 -1.34 5.05 -104.49 -0.53 -1.87 16 17 C 0.10 1.43 9.30 -17.54 -0.16 1.27 16 18 N -0.47 -6.62 10.36 -13.22 -0.14 -6.76 16 19 C 0.10 1.24 10.99 -17.51 -0.19 1.04 16 20 C -0.09 -1.13 6.34 -39.35 -0.25 -1.38 16 21 Cl -0.06 -0.73 28.99 -51.86 -1.50 -2.24 16 22 C -0.05 -0.69 9.67 -39.25 -0.38 -1.07 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 1.38 7.16 -51.93 -0.37 1.01 16 25 H 0.04 0.78 7.67 -51.93 -0.40 0.38 16 26 H 0.01 0.28 6.24 -51.93 -0.32 -0.05 16 27 H 0.09 2.39 6.02 -51.93 -0.31 2.08 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.08 1.57 6.17 -51.93 -0.32 1.25 16 30 H 0.04 0.69 6.06 -51.93 -0.31 0.38 16 31 H 0.01 0.26 8.14 -51.94 -0.42 -0.16 16 32 H 0.09 1.48 5.68 -51.93 -0.30 1.18 16 33 H 0.04 0.62 8.01 -51.93 -0.42 0.20 16 34 H 0.16 1.96 7.90 -52.49 -0.41 1.54 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -26.72 305.14 -8.31 -35.03 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.75 Total: -0.45 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.23 Total: -10.90 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.41 Total: -41.70 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.72 -8.31 -35.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703039111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds