Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 H 1.09003 * 109.47700 * 177.80497 * 3 2 1 5 5 C 1.50696 * 109.47221 * 297.80578 * 3 2 1 6 6 H 1.08007 * 120.00446 * 119.99619 * 5 3 2 7 7 C 1.37881 * 120.00192 * 300.00024 * 5 3 2 8 8 N 1.31515 * 119.99609 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00496 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47017 * 59.99643 * 9 7 5 11 11 H 1.48497 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46918 * 299.99855 * 9 7 5 13 13 N 1.46909 * 109.47233 * 57.80393 * 3 2 1 14 14 C 1.46901 * 110.99870 * 185.14501 * 13 3 2 15 15 C 1.46894 * 110.99604 * 61.19233 * 13 3 2 16 16 C 1.50706 * 109.47009 * 195.63506 * 15 13 3 17 17 C 1.38233 * 120.40789 * 269.72764 * 16 15 13 18 18 N 1.31860 * 120.78804 * 179.70137 * 17 16 15 19 19 C 1.31871 * 121.73814 * 0.58410 * 18 17 16 20 20 C 1.38309 * 120.74725 * 359.70350 * 19 18 17 21 21 Cl 1.73599 * 120.43330 * 179.97438 * 20 19 18 22 22 C 1.38600 * 120.41377 * 89.99992 * 16 15 13 23 23 H 1.09002 * 109.47117 * 176.25587 * 1 2 3 24 24 H 1.09003 * 109.46945 * 56.26095 * 1 2 3 25 25 H 1.08993 * 109.47448 * 296.25569 * 1 2 3 26 26 H 1.09001 * 109.47101 * 119.99614 * 2 1 3 27 27 H 1.08998 * 109.47832 * 239.99922 * 2 1 3 28 28 H 0.97005 * 120.00170 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46836 * 60.00298 * 14 13 3 30 30 H 1.09005 * 109.46620 * 179.97438 * 14 13 3 31 31 H 1.08989 * 109.47507 * 299.99811 * 14 13 3 32 32 H 1.09003 * 109.47618 * 315.63341 * 15 13 3 33 33 H 1.09001 * 109.47393 * 75.63657 * 15 13 3 34 34 H 1.07995 * 119.60976 * 359.97267 * 17 16 15 35 35 H 1.07995 * 119.62924 * 179.72683 * 19 18 17 36 36 H 1.08001 * 120.79405 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0394 5 6 1.5825 2.1370 -1.2567 6 1 0.9586 3.0162 -1.1914 7 6 1.9605 1.6501 -2.4901 8 7 2.7206 0.5798 -2.5697 9 14 1.3942 2.5114 -4.0479 10 1 1.8897 3.9113 -4.0476 11 1 1.9318 1.7956 -5.2327 12 1 -0.0899 2.5116 -4.1018 13 7 1.5074 2.1502 1.1721 14 6 1.8765 3.5717 1.1412 15 6 1.9570 1.5165 2.4187 16 6 1.1099 2.0060 3.5650 17 6 1.4831 3.1276 4.2816 18 7 0.7445 3.5659 5.2822 19 6 -0.3649 2.9528 5.6460 20 6 -0.7986 1.8211 4.9795 21 17 -2.2599 1.0200 5.4658 22 6 -0.0500 1.3340 3.9173 23 1 -0.3633 -1.0255 -0.0671 24 1 -0.3633 0.5708 -0.8546 25 1 -0.3634 0.4546 0.9216 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.9862 0.2370 -3.4374 29 1 1.4711 4.0329 0.2406 30 1 1.4692 4.0719 2.0199 31 1 2.9623 3.6653 1.1401 32 1 1.8602 0.4342 2.3317 33 1 3.0001 1.7744 2.6018 34 1 2.3880 3.6538 4.0162 35 1 -0.9415 3.3388 6.4735 36 1 -0.3640 0.4527 3.3777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703039111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = 16.139593 kcal Electronic energy + Delta-G solvation = -18501.730853 eV Core-core repulsion = 15625.177197 eV Total energy + Delta-G solvation = -2876.553655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35543 -38.96246 -37.60193 -35.30501 -33.58066 -32.92539 -32.06708 -28.76533 -27.89229 -26.02226 -24.71707 -23.98928 -22.75850 -20.71923 -18.22637 -18.07871 -17.78709 -17.08188 -16.69014 -15.96380 -15.84915 -15.40236 -14.96081 -14.53381 -14.18704 -14.07933 -13.80295 -13.65010 -13.15373 -13.03325 -12.85354 -12.76420 -12.68972 -12.53145 -12.15613 -12.04937 -11.87438 -11.58931 -11.25265 -10.82472 -10.63356 -10.56465 -10.41060 -9.86655 -8.89595 -8.06320 -6.15473 -0.08853 0.14862 1.01588 1.43886 1.45189 1.51682 2.43998 2.62120 3.22757 3.39245 3.53955 3.72661 3.78148 3.95399 4.05654 4.43348 4.50894 4.61770 4.63054 4.75820 4.77662 4.85946 4.91015 4.98111 5.17155 5.22984 5.31792 5.45685 5.49673 5.53610 5.75302 5.81150 5.90247 6.33127 6.40001 6.74152 6.80796 6.96831 7.52029 8.98640 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.004876 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.484719 B = 5741.620477 C = 6124.399075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.224 3.776 4 H -0.036 1.036 5 C -0.505 4.505 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.532 5.532 14 C 0.039 3.961 15 C 0.089 3.911 16 C -0.102 4.102 17 C 0.102 3.898 18 N -0.484 5.484 19 C 0.103 3.897 20 C -0.089 4.089 21 Cl -0.050 7.050 22 C -0.054 4.054 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 1.460 14.644 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.147 4.147 3 C 0.117 3.883 4 H -0.019 1.019 5 C -0.544 4.544 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.256 5.256 14 C -0.109 4.109 15 C -0.039 4.039 16 C -0.105 4.105 17 C -0.055 4.055 18 N -0.193 5.193 19 C -0.055 4.055 20 C -0.118 4.118 21 Cl -0.022 7.022 22 C -0.081 4.081 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.674 1.996 14.973 16.136 hybrid contribution 0.478 -0.514 -1.645 1.788 sum -5.196 1.482 13.328 14.381 Atomic orbital electron populations 1.21322 0.95847 0.98481 1.00925 1.21470 0.96287 0.97366 0.99539 1.19067 0.90392 0.91706 0.87131 1.01888 1.21268 1.30600 1.11770 0.90752 0.92542 1.25542 0.95394 0.95661 1.01534 1.69988 1.37171 1.23592 1.24967 0.85769 0.78606 0.78707 0.79485 1.19943 1.21320 1.19999 1.62055 1.59832 1.02518 1.01162 1.22233 0.97427 0.89657 1.01623 1.21033 0.95097 1.00092 0.87657 1.20812 0.96135 0.96418 0.97134 1.22974 0.99060 0.92942 0.90488 1.67874 1.05705 1.30675 1.15016 1.23103 0.92919 0.90521 0.98908 1.22111 0.92091 0.98062 0.99542 1.98376 1.33948 1.79026 1.90802 1.21566 0.92618 0.99980 0.93951 0.94605 0.94827 0.92861 0.94840 0.91930 0.93147 0.92349 0.91469 0.96824 0.89583 0.93736 0.81385 0.79766 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.52 71.98 0.69 -3.75 16 2 C -0.11 -4.86 5.16 30.59 0.16 -4.70 16 3 C 0.22 10.56 1.76 44.17 0.08 10.64 16 4 H -0.04 -1.94 8.14 -2.39 -0.02 -1.96 16 5 C -0.51 -26.24 6.71 25.60 0.17 -26.07 16 6 H 0.06 2.95 6.31 -2.91 -0.02 2.93 16 7 C 0.02 0.93 5.30 84.66 0.45 1.38 16 8 N -0.92 -51.02 11.31 21.45 0.24 -50.77 16 9 Si 0.95 42.72 29.54 68.60 2.03 44.74 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.53 -20.60 3.78 -906.03 -3.43 -24.03 16 14 C 0.04 1.42 8.98 127.69 1.15 2.56 16 15 C 0.09 2.84 5.01 85.56 0.43 3.27 16 16 C -0.10 -2.81 5.05 -19.78 -0.10 -2.91 16 17 C 0.10 2.63 9.30 84.69 0.79 3.42 16 18 N -0.48 -12.38 10.36 -195.75 -2.03 -14.41 16 19 C 0.10 2.30 10.99 84.70 0.93 3.23 16 20 C -0.09 -2.06 6.34 22.42 0.14 -1.92 16 21 Cl -0.05 -1.02 28.99 -2.72 -0.08 -1.10 16 22 C -0.05 -1.40 9.67 22.49 0.22 -1.19 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.03 1.52 7.16 -2.39 -0.02 1.51 16 25 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 26 H 0.03 1.34 6.24 -2.39 -0.01 1.33 16 27 H 0.06 3.24 6.02 -2.39 -0.01 3.22 16 28 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 29 H 0.06 2.34 6.17 -2.39 -0.01 2.32 16 30 H 0.07 2.09 6.06 -2.38 -0.01 2.08 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 2.76 5.68 -2.39 -0.01 2.75 16 33 H 0.04 1.37 8.01 -2.39 -0.02 1.35 16 34 H 0.17 3.84 7.90 -2.91 -0.02 3.81 16 35 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -56.63 305.14 2.91 -53.72 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.08 Total: 7.88 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.09 Total: -16.03 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -5.21 Total: -89.21 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -56.63 2.91 -53.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703039111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.864 kcal (2) G-P(sol) polarization free energy of solvation -56.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds