Wall clock time and date at job start Mon Mar 30 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46416 * 2 1 4 4 C 1.53000 * 109.47240 * 119.99697 * 2 1 3 5 5 C 1.50694 * 109.47045 * 182.93003 * 4 2 1 6 6 H 1.07994 * 120.00341 * 355.12465 * 5 4 2 7 7 C 1.37881 * 120.00015 * 175.12671 * 5 4 2 8 8 N 1.31520 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47251 * 89.99752 * 9 7 5 11 11 H 1.48503 * 109.47277 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47090 * 329.99923 * 9 7 5 13 13 N 1.46898 * 109.47208 * 240.00312 * 2 1 3 14 14 C 1.46894 * 111.00468 * 72.77482 * 13 2 1 15 15 C 1.46910 * 110.99584 * 308.82265 * 13 2 1 16 16 C 1.50700 * 109.46781 * 189.99904 * 15 13 2 17 17 C 1.38235 * 120.40858 * 90.00049 * 16 15 13 18 18 N 1.31852 * 120.79297 * 179.71730 * 17 16 15 19 19 C 1.31877 * 121.73676 * 0.26057 * 18 17 16 20 20 C 1.38306 * 120.74506 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.42745 * 179.97438 * 20 19 18 22 22 C 1.38606 * 120.41666 * 270.21194 * 16 15 13 23 23 H 1.08998 * 109.46957 * 299.99862 * 1 2 3 24 24 H 1.09003 * 109.46968 * 60.00286 * 1 2 3 25 25 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 302.93178 * 4 2 1 27 27 H 1.09004 * 109.46715 * 62.92916 * 4 2 1 28 28 H 0.96996 * 119.99935 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47582 * 289.86074 * 14 13 2 30 30 H 1.09011 * 109.46882 * 49.85579 * 14 13 2 31 31 H 1.08999 * 109.47665 * 169.85392 * 14 13 2 32 32 H 1.09000 * 109.46826 * 70.00510 * 15 13 2 33 33 H 1.08993 * 109.47171 * 310.00307 * 15 13 2 34 34 H 1.08000 * 119.60388 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.62357 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.79348 * 0.02938 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5453 -0.6586 1.2861 6 1 4.0881 -0.2246 0.4594 7 6 4.2295 -1.1553 2.3752 8 7 3.5684 -1.6834 3.3821 9 14 6.0952 -1.0771 2.4212 10 1 6.5218 0.1994 3.0487 11 1 6.6191 -2.2180 3.2143 12 1 6.6280 -1.1505 1.0370 13 7 2.0197 -0.6924 -1.1995 14 6 1.8124 0.1261 -2.4015 15 6 1.3845 -2.0093 -1.3432 16 6 2.0804 -2.7865 -2.4308 17 6 3.1576 -3.5991 -2.1304 18 7 3.7685 -4.2867 -3.0751 19 6 3.3854 -4.2257 -4.3355 20 6 2.3184 -3.4304 -4.7125 21 17 1.8215 -3.3557 -6.3742 22 6 1.6511 -2.6921 -3.7453 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6345 -0.2386 2.1385 27 1 1.7202 -1.7629 1.2234 28 1 4.0498 -2.0332 4.1481 29 1 0.7472 0.1778 -2.6266 30 1 2.1961 1.1314 -2.2271 31 1 2.3401 -0.3233 -3.2427 32 1 0.3343 -1.8794 -1.6046 33 1 1.4601 -2.5538 -0.4022 34 1 3.4998 -3.6754 -1.1089 35 1 3.9107 -4.8032 -5.0817 36 1 0.8146 -2.0622 -4.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703042649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:36 Heat of formation + Delta-G solvation = 27.082351 kcal Electronic energy + Delta-G solvation = -18384.596326 eV Core-core repulsion = 15508.517184 eV Total energy + Delta-G solvation = -2876.079142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29004 -37.91536 -36.68937 -33.48684 -32.45012 -31.41247 -30.30670 -27.38724 -27.03964 -24.41402 -23.53559 -22.82105 -21.72120 -18.87967 -17.10797 -16.64494 -16.22748 -16.01213 -15.05132 -14.72470 -14.36160 -14.04771 -13.82798 -13.20873 -13.05090 -12.88915 -12.32572 -12.06651 -11.99017 -11.82323 -11.70566 -11.50349 -11.35288 -11.02267 -10.73768 -10.66125 -10.44586 -10.11612 -9.63842 -9.46728 -9.23435 -9.02006 -8.79127 -8.28424 -7.62127 -5.91650 -3.89783 1.00035 1.17716 1.94561 3.38423 3.45473 3.50743 3.71302 4.46608 4.54647 4.60248 4.71996 4.86338 5.00077 5.19261 5.44477 5.47754 5.60426 5.64887 5.72627 5.77908 5.87799 5.91950 5.99969 6.12629 6.18783 6.26906 6.44526 6.57971 6.66048 6.89324 7.43311 7.55746 7.78745 7.91355 7.94828 8.09271 8.54819 9.17530 9.72910 11.20069 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.005489 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.147658 B = 5100.186080 C = 5992.113567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.073 0.927 4 C 0.030 3.970 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.509 5.509 14 C 0.021 3.979 15 C 0.094 3.906 16 C -0.100 4.100 17 C 0.131 3.869 18 N -0.470 5.470 19 C 0.103 3.897 20 C -0.094 4.094 21 Cl -0.068 7.068 22 C -0.066 4.066 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.015 0.985 28 H 0.258 0.742 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -1.885 -15.147 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.091 0.909 4 C -0.007 4.007 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.231 5.231 14 C -0.128 4.128 15 C -0.034 4.034 16 C -0.103 4.103 17 C -0.026 4.026 18 N -0.178 5.178 19 C -0.055 4.055 20 C -0.123 4.123 21 Cl -0.040 7.040 22 C -0.093 4.093 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.190 0.810 35 H 0.176 0.824 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.891 -2.556 -14.833 15.826 hybrid contribution -0.595 0.758 -0.435 1.058 sum -5.486 -1.798 -15.268 16.323 Atomic orbital electron populations 1.22541 0.99563 1.01360 1.00880 1.22004 0.90157 0.98412 0.91594 0.90894 1.19206 0.96542 0.95011 0.89952 1.21167 0.91440 1.37830 1.02631 0.91993 1.24995 0.97934 0.95924 0.95871 1.69957 1.35167 1.41425 1.07818 0.86676 0.86505 0.77317 0.78001 1.21030 1.21520 1.19837 1.62125 1.57353 1.01442 1.02213 1.22451 0.98148 0.98310 0.93851 1.21067 0.93953 0.91245 0.97106 1.20989 0.97258 0.97811 0.94252 1.23070 0.90144 0.89842 0.99561 1.67920 1.28546 1.21029 1.00313 1.22736 0.92973 0.95945 0.93833 1.22034 1.00408 1.03435 0.86388 1.98359 1.90927 1.97679 1.17014 1.21443 0.99234 0.97005 0.91633 0.92316 0.94157 0.92838 0.95860 0.96723 0.93280 0.96467 0.91718 0.92419 0.94230 0.87943 0.81043 0.82387 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.41 37.16 0.31 -2.59 16 2 C 0.09 1.62 2.27 -67.71 -0.15 1.47 16 3 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 4 C 0.03 0.71 4.40 -27.89 -0.12 0.59 16 5 C -0.49 -13.18 8.80 -34.44 -0.30 -13.48 16 6 H 0.06 1.68 7.69 -52.49 -0.40 1.27 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -8.89 4.30 -236.33 -1.02 -9.91 16 14 C 0.02 0.31 8.67 60.06 0.52 0.83 16 15 C 0.09 1.48 4.00 -4.97 -0.02 1.46 16 16 C -0.10 -1.48 4.89 -104.49 -0.51 -1.99 16 17 C 0.13 2.09 10.86 -17.54 -0.19 1.90 16 18 N -0.47 -7.33 10.36 -13.22 -0.14 -7.47 16 19 C 0.10 1.35 10.99 -17.51 -0.19 1.16 16 20 C -0.09 -1.17 6.34 -39.36 -0.25 -1.42 16 21 Cl -0.07 -0.73 28.99 -51.86 -1.50 -2.23 16 22 C -0.07 -0.85 8.10 -39.25 -0.32 -1.17 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.56 7.02 -51.93 -0.36 0.19 16 25 H 0.05 0.82 6.54 -51.93 -0.34 0.48 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.01 0.36 6.36 -51.93 -0.33 0.03 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.22 7.09 -51.93 -0.37 -0.15 16 30 H 0.06 0.94 7.89 -51.92 -0.41 0.53 16 31 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 32 H 0.04 0.56 6.72 -51.93 -0.35 0.21 16 33 H 0.10 1.80 6.13 -51.93 -0.32 1.48 16 34 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -28.82 309.64 -8.48 -37.30 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.88 Total: -1.49 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.32 Total: -11.87 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.42 Total: -43.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.82 -8.48 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703042649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.387 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds