Wall clock time and date at job start Mon Mar 30 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46416 * 2 1 4 4 C 1.53000 * 109.47240 * 119.99697 * 2 1 3 5 5 C 1.50694 * 109.47045 * 182.93003 * 4 2 1 6 6 H 1.07994 * 120.00341 * 355.12465 * 5 4 2 7 7 C 1.37881 * 120.00015 * 175.12671 * 5 4 2 8 8 N 1.31520 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47251 * 89.99752 * 9 7 5 11 11 H 1.48503 * 109.47277 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47090 * 329.99923 * 9 7 5 13 13 N 1.46898 * 109.47208 * 240.00312 * 2 1 3 14 14 C 1.46894 * 111.00468 * 72.77482 * 13 2 1 15 15 C 1.46910 * 110.99584 * 308.82265 * 13 2 1 16 16 C 1.50700 * 109.46781 * 189.99904 * 15 13 2 17 17 C 1.38235 * 120.40858 * 90.00049 * 16 15 13 18 18 N 1.31852 * 120.79297 * 179.71730 * 17 16 15 19 19 C 1.31877 * 121.73676 * 0.26057 * 18 17 16 20 20 C 1.38306 * 120.74506 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.42745 * 179.97438 * 20 19 18 22 22 C 1.38606 * 120.41666 * 270.21194 * 16 15 13 23 23 H 1.08998 * 109.46957 * 299.99862 * 1 2 3 24 24 H 1.09003 * 109.46968 * 60.00286 * 1 2 3 25 25 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 302.93178 * 4 2 1 27 27 H 1.09004 * 109.46715 * 62.92916 * 4 2 1 28 28 H 0.96996 * 119.99935 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47582 * 289.86074 * 14 13 2 30 30 H 1.09011 * 109.46882 * 49.85579 * 14 13 2 31 31 H 1.08999 * 109.47665 * 169.85392 * 14 13 2 32 32 H 1.09000 * 109.46826 * 70.00510 * 15 13 2 33 33 H 1.08993 * 109.47171 * 310.00307 * 15 13 2 34 34 H 1.08000 * 119.60388 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.62357 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.79348 * 0.02938 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5453 -0.6586 1.2861 6 1 4.0881 -0.2246 0.4594 7 6 4.2295 -1.1553 2.3752 8 7 3.5684 -1.6834 3.3821 9 14 6.0952 -1.0771 2.4212 10 1 6.5218 0.1994 3.0487 11 1 6.6191 -2.2180 3.2143 12 1 6.6280 -1.1505 1.0370 13 7 2.0197 -0.6924 -1.1995 14 6 1.8124 0.1261 -2.4015 15 6 1.3845 -2.0093 -1.3432 16 6 2.0804 -2.7865 -2.4308 17 6 3.1576 -3.5991 -2.1304 18 7 3.7685 -4.2867 -3.0751 19 6 3.3854 -4.2257 -4.3355 20 6 2.3184 -3.4304 -4.7125 21 17 1.8215 -3.3557 -6.3742 22 6 1.6511 -2.6921 -3.7453 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6345 -0.2386 2.1385 27 1 1.7202 -1.7629 1.2234 28 1 4.0498 -2.0332 4.1481 29 1 0.7472 0.1778 -2.6266 30 1 2.1961 1.1314 -2.2271 31 1 2.3401 -0.3233 -3.2427 32 1 0.3343 -1.8794 -1.6046 33 1 1.4601 -2.5538 -0.4022 34 1 3.4998 -3.6754 -1.1089 35 1 3.9107 -4.8032 -5.0817 36 1 0.8146 -2.0622 -4.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703042649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:35 Heat of formation + Delta-G solvation = 10.034610 kcal Electronic energy + Delta-G solvation = -18385.335571 eV Core-core repulsion = 15508.517184 eV Total energy + Delta-G solvation = -2876.818387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40726 -39.27167 -37.63061 -35.18171 -34.02680 -32.55105 -31.75153 -29.10235 -28.25039 -25.83396 -24.66459 -24.50199 -23.02581 -20.33414 -18.34087 -18.13430 -17.76409 -17.22602 -16.63581 -16.14220 -15.82789 -15.35783 -15.03865 -14.50509 -14.20646 -14.13414 -13.96757 -13.63611 -13.22122 -13.05647 -13.02292 -12.91498 -12.68123 -12.45429 -12.41193 -12.28110 -12.01148 -11.78112 -11.08806 -11.05566 -10.68164 -10.57029 -10.43624 -9.87221 -8.91953 -8.07085 -6.10300 -0.09147 0.11232 0.97373 1.42129 1.44267 1.54476 2.49245 2.58510 3.22438 3.33531 3.45205 3.72524 3.73860 3.91306 4.02505 4.22584 4.33341 4.49278 4.52595 4.58730 4.65489 4.73639 4.81927 4.88726 5.05855 5.06149 5.17476 5.24733 5.28053 5.51520 5.54453 5.74705 5.93607 6.31690 6.40772 6.54497 6.83791 7.04493 7.55636 9.04635 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.005489 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.147658 B = 5100.186080 C = 5992.113567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.494 4.494 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.533 5.533 14 C 0.025 3.975 15 C 0.102 3.898 16 C -0.105 4.105 17 C 0.110 3.890 18 N -0.492 5.492 19 C 0.102 3.898 20 C -0.089 4.089 21 Cl -0.045 7.045 22 C -0.056 4.056 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.055 0.945 26 H -0.005 1.005 27 H -0.001 1.001 28 H 0.257 0.743 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.184 0.816 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -1.348 -17.769 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.533 4.533 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.580 5.580 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.257 5.257 14 C -0.123 4.123 15 C -0.026 4.026 16 C -0.108 4.108 17 C -0.047 4.047 18 N -0.201 5.201 19 C -0.056 4.056 20 C -0.118 4.118 21 Cl -0.016 7.016 22 C -0.083 4.083 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.201 0.799 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.446 -2.008 -17.467 18.406 hybrid contribution -0.440 0.563 0.263 0.761 sum -5.886 -1.445 -17.204 18.240 Atomic orbital electron populations 1.22405 0.96822 1.01943 1.02158 1.21659 0.92289 0.97103 0.90189 0.91592 1.19068 0.95052 0.94419 0.91664 1.21470 0.93113 1.36640 1.02031 0.92500 1.25731 1.02065 0.95977 0.95810 1.70073 1.36700 1.42761 1.08467 0.85729 0.81677 0.77379 0.77917 1.20320 1.21422 1.19571 1.61962 1.58494 1.02423 1.02799 1.22443 0.99754 0.97681 0.92402 1.20924 0.95207 0.90214 0.96218 1.20817 0.97117 0.97869 0.94990 1.22830 0.91409 0.91432 0.99007 1.67868 1.29286 1.21594 1.01332 1.23160 0.93199 0.95926 0.93309 1.22058 0.99750 1.02491 0.87487 1.98374 1.90636 1.97537 1.15074 1.21612 0.99405 0.96734 0.90566 0.92520 0.91356 0.92585 0.98697 0.98330 0.93378 0.94084 0.91780 0.91907 0.91939 0.90925 0.83415 0.79909 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 8.41 71.98 0.61 -4.59 16 2 C 0.10 3.58 2.27 44.92 0.10 3.68 16 3 H 0.07 2.54 7.87 -2.38 -0.02 2.52 16 4 C 0.04 1.73 4.40 29.85 0.13 1.86 16 5 C -0.49 -27.11 8.80 25.60 0.23 -26.89 16 6 H 0.06 3.13 7.69 -2.91 -0.02 3.10 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.94 -56.38 13.29 21.45 0.28 -56.10 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.30 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.53 -18.17 4.30 -901.60 -3.87 -22.04 16 14 C 0.03 0.66 8.67 127.69 1.11 1.77 16 15 C 0.10 3.15 4.00 85.56 0.34 3.49 16 16 C -0.11 -3.01 4.89 -19.78 -0.10 -3.11 16 17 C 0.11 3.58 10.86 84.69 0.92 4.50 16 18 N -0.49 -15.22 10.36 -195.75 -2.03 -17.25 16 19 C 0.10 2.49 10.99 84.70 0.93 3.42 16 20 C -0.09 -1.97 6.34 22.41 0.14 -1.83 16 21 Cl -0.04 -0.81 28.99 -2.72 -0.08 -0.89 16 22 C -0.06 -1.30 8.10 22.49 0.18 -1.11 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.66 7.02 -2.39 -0.02 1.65 16 25 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 26 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.00 -0.08 6.36 -2.38 -0.02 -0.09 16 28 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.04 0.89 7.09 -2.39 -0.02 0.88 16 30 H 0.06 1.70 7.89 -2.38 -0.02 1.68 16 31 H 0.06 1.60 6.58 -2.39 -0.02 1.58 16 32 H 0.06 1.61 6.72 -2.39 -0.02 1.60 16 33 H 0.07 2.66 6.13 -2.39 -0.01 2.64 16 34 H 0.15 5.38 8.06 -2.91 -0.02 5.35 16 35 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -62.72 309.64 2.45 -60.27 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.07 Total: 7.02 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.05 Total: -18.32 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -5.62 Total: -95.38 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.72 2.45 -60.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703042649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.302 kcal (2) G-P(sol) polarization free energy of solvation -62.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds