Wall clock time and date at job start Mon Mar 30 2020 07:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 119.61490 * 2 1 4 4 C 1.38631 * 119.15997 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.78842 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47027 * 90.00500 * 5 4 3 7 7 C 1.39682 * 119.99776 * 179.97438 * 6 5 4 8 8 C 1.39330 * 119.95446 * 359.97438 * 7 6 5 9 9 C 1.38481 * 120.42831 * 180.02562 * 8 7 6 10 10 C 1.37691 * 120.32299 * 0.02562 * 9 8 7 11 11 C 1.40758 * 119.89216 * 0.02562 * 10 9 8 12 12 C 1.41406 * 120.20838 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99856 * 335.31765 * 12 11 10 14 14 C 1.39929 * 120.00171 * 155.31234 * 12 11 10 15 15 N 1.30833 * 119.99918 * 342.17731 * 14 12 11 16 16 Si 1.86795 * 120.00335 * 162.17878 * 14 12 11 17 17 H 1.48500 * 109.46658 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46917 * 119.99797 * 16 14 12 19 19 H 1.48488 * 109.47507 * 240.00143 * 16 14 12 20 20 C 1.38283 * 119.94750 * 179.97438 * 7 6 5 21 21 C 1.38678 * 118.41881 * 0.25651 * 4 3 2 22 22 C 1.38178 * 119.16017 * 359.47987 * 21 4 3 23 23 N 1.31849 * 119.61871 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47432 * 89.99685 * 1 2 3 25 25 H 1.09002 * 109.46618 * 209.99594 * 1 2 3 26 26 H 1.08997 * 109.47270 * 329.99211 * 1 2 3 27 27 H 1.07995 * 120.42445 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47581 * 329.99864 * 5 4 3 29 29 H 1.09003 * 109.46873 * 210.00019 * 5 4 3 30 30 H 0.96997 * 119.99777 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.78975 * 0.02562 * 8 7 6 32 32 H 1.07990 * 119.84252 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.05787 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00450 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.16638 * 0.28104 * 20 7 6 36 36 H 1.08000 * 120.41516 * 179.75115 * 21 4 3 37 37 H 1.08002 * 119.61324 * 180.29651 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 -0.0011 6 7 4.6119 2.8968 1.3799 7 6 5.3248 4.0707 1.6346 8 6 5.7944 4.8433 0.5745 9 6 6.5026 6.0086 0.8157 10 6 6.7511 6.4164 2.1071 11 6 6.2839 5.6456 3.1883 12 6 6.5349 6.0584 4.5173 13 1 7.3788 6.6964 4.7343 14 6 5.6897 5.6404 5.5512 15 7 4.4985 5.1752 5.2746 16 14 6.2619 5.7467 7.3261 17 1 7.6375 6.3043 7.3701 18 1 5.3451 6.6310 8.0897 19 1 6.2578 4.3900 7.9296 20 6 5.5634 4.4643 2.9385 21 6 4.2266 -0.0342 -0.0065 22 6 3.4766 -1.1947 -0.0008 23 7 2.1587 -1.1462 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6508 2.1373 -0.0004 28 1 3.7854 3.2512 -0.5149 29 1 5.3071 2.3279 -0.5153 30 1 4.2850 2.3582 2.1174 31 1 5.6048 4.5315 -0.4420 32 1 6.8626 6.6000 -0.0131 33 1 7.3036 7.3261 2.2903 34 1 3.9127 4.8850 5.9912 35 1 5.2038 3.8640 3.7611 36 1 5.3056 -0.0804 -0.0112 37 1 3.9755 -2.1526 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703438455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:44 Heat of formation + Delta-G solvation = 46.376336 kcal Electronic energy + Delta-G solvation = -18835.961829 eV Core-core repulsion = 15963.152187 eV Total energy + Delta-G solvation = -2872.809642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35089 -37.84254 -35.47382 -33.57893 -32.85215 -32.21088 -29.44842 -28.39710 -27.69591 -25.41499 -25.08536 -23.12293 -21.45730 -20.62592 -19.86230 -17.23807 -16.71153 -16.49463 -15.76551 -15.26355 -14.89985 -14.65066 -14.54962 -14.11318 -13.59157 -13.24422 -13.01796 -12.75115 -12.50231 -12.46746 -12.26625 -11.92406 -11.74146 -11.51205 -11.12127 -11.00797 -10.60792 -10.42366 -9.89096 -9.58343 -9.52261 -9.41853 -9.27391 -8.99653 -8.80090 -7.32740 -6.74232 -6.21525 -4.32218 1.05662 1.13936 2.84804 3.10014 3.15554 3.20879 3.31728 3.64963 3.97459 4.22342 4.39342 4.59848 4.68983 4.72222 5.03768 5.07502 5.37469 5.42527 5.45174 5.54398 5.72775 5.80978 5.84010 5.92398 6.01857 6.24900 6.37145 6.55113 6.65194 6.85670 7.07175 7.12894 7.35359 7.41032 7.77037 7.91107 7.93850 8.08041 8.15996 8.47027 8.64148 8.81561 9.00077 9.09594 10.24784 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.004231 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.276312 B = 6616.488788 C = 7435.872800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.154 4.154 4 C -0.046 4.046 5 C 0.175 3.825 6 N -0.756 5.756 7 C 0.214 3.786 8 C -0.300 4.300 9 C -0.066 4.066 10 C -0.256 4.256 11 C 0.139 3.861 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.792 5.792 16 Si 0.903 3.097 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.229 4.229 21 C -0.163 4.163 22 C 0.098 3.902 23 N -0.488 5.488 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.391 0.609 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.277 0.723 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 -9.363 -7.792 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.175 4.175 4 C -0.055 4.055 5 C 0.050 3.950 6 N -0.390 5.390 7 C 0.116 3.884 8 C -0.323 4.323 9 C -0.084 4.084 10 C -0.277 4.277 11 C 0.136 3.864 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.139 4.139 15 N -0.418 5.418 16 Si 0.728 3.272 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.198 1.198 20 C -0.253 4.253 21 C -0.183 4.183 22 C -0.058 4.058 23 N -0.198 5.198 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.545 -10.192 -7.884 14.028 hybrid contribution 0.568 0.638 1.073 1.372 sum -4.976 -9.554 -6.811 12.745 Atomic orbital electron populations 1.20705 0.88862 1.03526 1.02948 1.21286 0.97024 0.88268 0.95000 1.21960 0.94301 0.99488 1.01721 1.20511 0.93940 0.95730 0.95277 1.19961 0.97572 0.90809 0.86653 1.44338 1.63983 1.26462 1.04238 1.17630 0.91460 0.85161 0.94122 1.19869 1.15608 1.01537 0.95270 1.20284 0.97379 0.95182 0.95601 1.20879 1.12493 1.01839 0.92458 1.17325 0.87765 0.88927 0.92398 1.19593 1.10866 1.27496 0.91475 0.90498 1.25877 0.93796 0.92829 1.01439 1.69872 1.05727 1.31447 1.34747 0.86346 0.80157 0.78708 0.81994 1.18414 1.20089 1.19835 1.20711 1.11575 1.00363 0.92645 1.22116 1.01704 0.92805 1.01722 1.22700 0.89382 0.98328 0.95420 1.67485 1.10087 1.29467 1.12790 0.90520 0.90563 0.90590 0.84626 0.92058 0.92031 0.77591 0.89663 0.89574 0.89331 0.91228 0.86587 0.84625 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.17 36.01 0.37 -0.60 16 2 C 0.12 1.51 6.78 -82.59 -0.56 0.95 16 3 C -0.15 -1.97 9.45 -39.44 -0.37 -2.34 16 4 C -0.05 -0.62 5.29 -104.32 -0.55 -1.17 16 5 C 0.18 2.66 5.08 -5.19 -0.03 2.63 16 6 N -0.76 -14.23 5.72 -59.86 -0.34 -14.58 16 7 C 0.21 4.94 6.64 -83.86 -0.56 4.39 16 8 C -0.30 -6.72 9.32 -39.09 -0.36 -7.09 16 9 C -0.07 -1.50 10.02 -39.69 -0.40 -1.90 16 10 C -0.26 -6.44 9.79 -38.83 -0.38 -6.82 16 11 C 0.14 3.77 5.57 -106.85 -0.60 3.17 16 12 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 13 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 14 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 15 N -0.79 -20.70 10.97 55.55 0.61 -20.09 16 16 Si 0.90 18.88 29.59 -169.99 -5.03 13.85 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.23 -5.97 8.52 -38.67 -0.33 -6.30 16 21 C -0.16 -1.98 9.82 -39.44 -0.39 -2.37 16 22 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 23 N -0.49 -6.48 10.27 -9.48 -0.10 -6.57 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 29 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 30 H 0.39 7.26 8.47 -40.82 -0.35 6.92 16 31 H 0.09 1.70 6.70 -52.49 -0.35 1.35 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 35 H 0.12 3.13 6.18 -52.49 -0.32 2.81 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -29.17 317.70 -9.63 -38.80 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -4.77 Total: 11.26 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -4.78 Total: -27.45 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.17 Total: -41.24 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.17 -9.63 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703438455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.173 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds