Wall clock time and date at job start Mon Mar 30 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 119.61490 * 2 1 4 4 C 1.38631 * 119.15997 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.78842 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47027 * 90.00500 * 5 4 3 7 7 C 1.39682 * 119.99776 * 179.97438 * 6 5 4 8 8 C 1.39330 * 119.95446 * 359.97438 * 7 6 5 9 9 C 1.38481 * 120.42831 * 180.02562 * 8 7 6 10 10 C 1.37691 * 120.32299 * 0.02562 * 9 8 7 11 11 C 1.40758 * 119.89216 * 0.02562 * 10 9 8 12 12 C 1.41406 * 120.20838 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99856 * 335.31765 * 12 11 10 14 14 C 1.39929 * 120.00171 * 155.31234 * 12 11 10 15 15 N 1.30833 * 119.99918 * 342.17731 * 14 12 11 16 16 Si 1.86795 * 120.00335 * 162.17878 * 14 12 11 17 17 H 1.48500 * 109.46658 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46917 * 119.99797 * 16 14 12 19 19 H 1.48488 * 109.47507 * 240.00143 * 16 14 12 20 20 C 1.38283 * 119.94750 * 179.97438 * 7 6 5 21 21 C 1.38678 * 118.41881 * 0.25651 * 4 3 2 22 22 C 1.38178 * 119.16017 * 359.47987 * 21 4 3 23 23 N 1.31849 * 119.61871 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47432 * 89.99685 * 1 2 3 25 25 H 1.09002 * 109.46618 * 209.99594 * 1 2 3 26 26 H 1.08997 * 109.47270 * 329.99211 * 1 2 3 27 27 H 1.07995 * 120.42445 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47581 * 329.99864 * 5 4 3 29 29 H 1.09003 * 109.46873 * 210.00019 * 5 4 3 30 30 H 0.96997 * 119.99777 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.78975 * 0.02562 * 8 7 6 32 32 H 1.07990 * 119.84252 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.05787 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00450 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.16638 * 0.28104 * 20 7 6 36 36 H 1.08000 * 120.41516 * 179.75115 * 21 4 3 37 37 H 1.08002 * 119.61324 * 180.29651 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 -0.0011 6 7 4.6119 2.8968 1.3799 7 6 5.3248 4.0707 1.6346 8 6 5.7944 4.8433 0.5745 9 6 6.5026 6.0086 0.8157 10 6 6.7511 6.4164 2.1071 11 6 6.2839 5.6456 3.1883 12 6 6.5349 6.0584 4.5173 13 1 7.3788 6.6964 4.7343 14 6 5.6897 5.6404 5.5512 15 7 4.4985 5.1752 5.2746 16 14 6.2619 5.7467 7.3261 17 1 7.6375 6.3043 7.3701 18 1 5.3451 6.6310 8.0897 19 1 6.2578 4.3900 7.9296 20 6 5.5634 4.4643 2.9385 21 6 4.2266 -0.0342 -0.0065 22 6 3.4766 -1.1947 -0.0008 23 7 2.1587 -1.1462 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6508 2.1373 -0.0004 28 1 3.7854 3.2512 -0.5149 29 1 5.3071 2.3279 -0.5153 30 1 4.2850 2.3582 2.1174 31 1 5.6048 4.5315 -0.4420 32 1 6.8626 6.6000 -0.0131 33 1 7.3036 7.3261 2.2903 34 1 3.9127 4.8850 5.9912 35 1 5.2038 3.8640 3.7611 36 1 5.3056 -0.0804 -0.0112 37 1 3.9755 -2.1526 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703438455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:43 Heat of formation + Delta-G solvation = 30.646481 kcal Electronic energy + Delta-G solvation = -18836.643927 eV Core-core repulsion = 15963.152187 eV Total energy + Delta-G solvation = -2873.491740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31642 -39.60231 -36.97023 -35.32977 -33.91279 -33.41319 -31.34979 -29.95088 -28.55648 -27.16275 -26.63451 -24.09498 -23.05015 -22.05928 -21.52210 -19.10121 -17.94409 -17.59125 -17.12910 -16.56216 -16.51897 -16.14188 -15.89770 -15.32691 -14.81243 -14.64596 -14.46555 -14.23188 -14.06552 -13.51827 -13.34081 -13.27481 -13.06216 -12.87849 -12.74863 -12.58047 -12.39078 -12.10386 -11.59591 -11.34327 -11.09722 -10.71529 -10.53963 -10.50037 -9.90161 -9.25687 -8.63258 -7.95286 -6.32684 0.11939 0.14319 1.07140 1.32260 1.38300 1.52788 1.56717 2.22615 2.60657 2.80667 3.04379 3.38849 3.50828 3.74804 3.86758 4.10457 4.15014 4.42642 4.50864 4.55879 4.61427 4.66213 4.76487 4.79149 4.81647 4.98975 5.07300 5.17707 5.19812 5.28696 5.35745 5.42666 5.57441 5.73942 5.93436 6.09757 6.20677 6.23953 6.56772 6.91831 6.98074 6.98134 7.05203 7.20887 8.37490 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.004231 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.276312 B = 6616.488788 C = 7435.872800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 C -0.163 4.163 4 C -0.057 4.057 5 C 0.177 3.823 6 N -0.750 5.750 7 C 0.220 3.780 8 C -0.300 4.300 9 C -0.062 4.062 10 C -0.284 4.284 11 C 0.109 3.891 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.265 1.265 20 C -0.258 4.258 21 C -0.165 4.165 22 C 0.096 3.904 23 N -0.506 5.506 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.390 0.610 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.284 0.716 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -10.301 -8.568 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.025 4.025 3 C -0.183 4.183 4 C -0.065 4.065 5 C 0.054 3.946 6 N -0.382 5.382 7 C 0.119 3.881 8 C -0.323 4.323 9 C -0.080 4.080 10 C -0.305 4.305 11 C 0.106 3.894 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.177 4.177 15 N -0.449 5.449 16 Si 0.799 3.201 17 H -0.182 1.182 18 H -0.191 1.191 19 H -0.190 1.190 20 C -0.282 4.282 21 C -0.186 4.186 22 C -0.061 4.061 23 N -0.217 5.217 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.223 0.777 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.880 -11.151 -8.694 15.314 hybrid contribution 0.618 0.855 1.162 1.569 sum -5.262 -10.296 -7.533 13.800 Atomic orbital electron populations 1.20779 0.86946 1.04095 1.04058 1.21736 0.98458 0.87941 0.94333 1.22100 0.94254 1.00081 1.01887 1.20402 0.94163 0.95307 0.96649 1.20060 0.98380 0.91859 0.84349 1.44422 1.62680 1.25004 1.06090 1.17726 0.90794 0.86240 0.93331 1.20233 1.14587 1.01008 0.96453 1.20664 0.96284 0.95441 0.95652 1.21047 1.13776 1.02332 0.93299 1.17706 0.88652 0.89791 0.93260 1.19839 1.11710 1.29161 0.92677 0.91005 1.26695 0.93445 0.91948 1.05572 1.69927 1.06644 1.31954 1.36406 0.85230 0.79628 0.79028 0.76234 1.18240 1.19054 1.19002 1.20635 1.13327 1.00683 0.93563 1.22297 1.02501 0.92488 1.01278 1.23174 0.89116 0.99436 0.94344 1.67564 1.10860 1.29917 1.13347 0.89054 0.90447 0.89555 0.83969 0.91692 0.91110 0.77656 0.86609 0.86196 0.89158 0.90506 0.88475 0.83267 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 10.17 71.24 0.72 -0.99 16 2 C 0.11 2.62 6.78 42.55 0.29 2.91 16 3 C -0.16 -3.93 9.45 22.36 0.21 -3.71 16 4 C -0.06 -1.43 5.29 -19.67 -0.10 -1.53 16 5 C 0.18 5.04 5.08 85.63 0.44 5.48 16 6 N -0.75 -27.59 5.72 -343.30 -1.96 -29.55 16 7 C 0.22 10.06 6.64 38.16 0.25 10.31 16 8 C -0.30 -12.92 9.32 22.59 0.21 -12.71 16 9 C -0.06 -2.75 10.02 22.20 0.22 -2.53 16 10 C -0.28 -14.49 9.79 22.76 0.22 -14.27 16 11 C 0.11 6.09 5.57 -21.31 -0.12 5.98 16 12 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 14 C 0.04 1.97 5.14 85.25 0.44 2.41 16 15 N -0.82 -44.11 10.97 21.82 0.24 -43.87 16 16 Si 0.98 39.27 29.59 68.60 2.03 41.30 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 C -0.26 -13.80 8.52 22.86 0.19 -13.60 16 21 C -0.17 -3.70 9.82 22.36 0.22 -3.48 16 22 C 0.10 2.07 11.18 84.67 0.95 3.01 16 23 N -0.51 -12.57 10.27 -183.89 -1.89 -14.46 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 27 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 29 H 0.07 1.91 7.90 -2.39 -0.02 1.90 16 30 H 0.39 14.44 8.47 -92.71 -0.79 13.65 16 31 H 0.12 4.23 6.70 -2.91 -0.02 4.21 16 32 H 0.12 4.45 8.06 -2.92 -0.02 4.42 16 33 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 35 H 0.10 5.47 6.18 -2.91 -0.02 5.45 16 36 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.73 317.70 3.07 -60.66 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.29 Total: 36.65 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 4.36 Total: -50.73 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -3.61 Total: -87.89 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -63.73 3.07 -60.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703438455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.311 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds