Wall clock time and date at job start Mon Mar 30 2020 07:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48505 * 109.47264 * 240.00126 * 3 2 1 5 5 H 1.48503 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47102 * 119.99956 * 3 2 1 7 7 C 1.37874 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00171 * 174.90320 * 7 2 1 9 9 C 1.50699 * 119.99924 * 354.90389 * 7 2 1 10 10 H 1.08994 * 109.46938 * 335.06337 * 9 7 2 11 11 C 1.50705 * 109.47007 * 95.06206 * 9 7 2 12 12 C 1.38236 * 120.00009 * 233.97510 * 11 9 7 13 13 C 1.38230 * 119.99820 * 179.97438 * 12 11 9 14 14 C 1.38228 * 120.00337 * 359.97438 * 13 12 11 15 15 C 1.38236 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38229 * 120.00101 * 0.08619 * 15 14 13 17 17 N 1.46501 * 109.47185 * 215.06141 * 9 7 2 18 18 C 1.36881 * 126.39548 * 305.89695 * 17 9 7 19 19 C 1.34672 * 106.81568 * 179.97438 * 18 17 9 20 20 N 1.34119 * 108.02067 * 359.97438 * 19 18 17 21 21 C 1.30500 * 109.25966 * 359.72725 * 20 19 18 22 22 C 1.50703 * 125.65604 * 180.28934 * 21 20 19 23 23 C 1.53001 * 117.49658 * 8.92207 * 22 21 20 24 24 C 1.53004 * 117.49762 * 300.26179 * 22 21 20 25 25 H 0.97004 * 120.00255 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99850 * 0.02562 * 12 11 9 27 27 H 1.08007 * 119.99401 * 180.02562 * 13 12 11 28 28 H 1.08003 * 120.00309 * 179.71884 * 14 13 12 29 29 H 1.08000 * 119.99856 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00204 * 179.97438 * 16 15 14 31 31 H 1.07998 * 126.59616 * 0.03744 * 18 17 9 32 32 H 1.08007 * 125.98798 * 180.02562 * 19 18 17 33 33 H 1.08994 * 115.54880 * 154.59578 * 22 21 20 34 34 H 1.09001 * 117.49802 * 359.97438 * 23 22 21 35 35 H 1.08994 * 117.49556 * 145.02023 * 23 22 21 36 36 H 1.08992 * 117.50276 * 214.97721 * 24 22 21 37 37 H 1.09003 * 117.49927 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0836 9 6 1.2555 -2.4966 0.1148 10 1 0.3029 -2.3247 0.6158 11 6 1.0053 -3.0558 -1.2621 12 6 -0.2794 -3.3860 -1.6511 13 6 -0.5089 -3.8984 -2.9142 14 6 0.5461 -4.0802 -3.7886 15 6 1.8309 -3.7500 -3.3996 16 6 2.0607 -3.2397 -2.1357 17 7 2.0510 -3.4502 0.8921 18 6 3.3436 -3.8242 0.6411 19 6 3.6839 -4.7130 1.5939 20 7 2.6282 -4.8767 2.4047 21 6 1.6485 -4.1188 1.9941 22 6 0.2912 -4.0108 2.6401 23 6 0.0979 -4.6928 3.9960 24 6 -0.5467 -5.2870 2.7411 25 1 -0.4851 0.8401 -0.0004 26 1 -1.1039 -3.2428 -0.9683 27 1 -1.5128 -4.1560 -3.2182 28 1 0.3674 -4.4848 -4.7739 29 1 2.6553 -3.8924 -4.0827 30 1 3.0646 -2.9821 -1.8317 31 1 3.9704 -3.4733 -0.1653 32 1 4.6398 -5.2068 1.6889 33 1 -0.2380 -3.0736 2.4681 34 1 0.9523 -5.2200 4.4206 35 1 -0.5588 -4.2045 4.7159 36 1 -1.6271 -5.1894 2.6361 37 1 -0.1164 -6.2047 2.3400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704263407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:00 Heat of formation + Delta-G solvation = 104.809752 kcal Electronic energy + Delta-G solvation = -20183.859839 eV Core-core repulsion = 17313.584060 eV Total energy + Delta-G solvation = -2870.275779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25190 -38.45549 -36.46342 -34.52206 -32.16497 -30.28588 -30.04358 -28.54658 -26.82567 -23.73796 -22.82966 -22.03064 -21.87973 -21.00780 -20.01288 -18.40088 -16.85495 -16.59933 -15.94441 -15.15664 -14.81999 -14.30700 -14.12136 -13.96688 -13.71909 -13.14762 -12.87304 -12.58877 -12.48747 -11.96860 -11.88505 -11.40486 -11.22857 -11.13835 -11.11812 -10.54894 -10.48572 -10.38575 -10.20644 -10.07734 -9.72378 -9.24209 -8.88509 -8.51603 -8.24028 -7.99581 -7.41522 -6.45626 -4.54005 2.05255 2.08989 2.94927 3.13453 3.17772 3.21121 3.79175 3.86845 4.13969 4.45914 4.58562 4.92103 5.04582 5.30067 5.37901 5.49612 5.52165 5.54383 5.66238 5.79274 5.96962 6.05261 6.08141 6.16001 6.19891 6.31291 6.40403 6.46406 6.54398 6.64680 6.69329 6.78873 7.10579 7.14724 7.32934 7.40555 7.51502 7.59633 7.69489 7.83652 8.19703 8.55057 8.96726 9.13582 10.61152 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.009136 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.608690 B = 3064.091275 C = 4048.579547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.276 3.724 10 H 0.093 0.907 11 C -0.046 4.046 12 C -0.108 4.108 13 C -0.128 4.128 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.099 4.099 17 N -0.412 5.412 18 C -0.038 4.038 19 C -0.059 4.059 20 N -0.507 5.507 21 C 0.221 3.779 22 C -0.073 4.073 23 C -0.156 4.156 24 C -0.166 4.166 25 H 0.271 0.729 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -6.087 -1.308 6.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.176 3.824 10 H 0.111 0.889 11 C -0.048 4.048 12 C -0.126 4.126 13 C -0.146 4.146 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.117 4.117 17 N -0.089 5.089 18 C -0.176 4.176 19 C -0.208 4.208 20 N -0.227 5.227 21 C -0.041 4.041 22 C -0.093 4.093 23 C -0.194 4.194 24 C -0.204 4.204 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.001 -6.338 -0.728 6.457 hybrid contribution 0.579 1.696 -1.024 2.064 sum -0.422 -4.641 -1.752 4.979 Atomic orbital electron populations 1.69875 1.06095 1.28160 1.46832 1.24970 0.95021 0.99766 0.93278 0.86420 0.79636 0.81654 0.79140 1.19740 1.20804 1.19714 1.21027 0.93766 0.88792 1.52943 0.91402 1.18409 0.93684 0.85123 0.85144 0.88903 1.20516 0.92783 0.93471 0.98020 1.21009 0.96823 0.98499 0.96295 1.20976 0.98252 1.01014 0.94398 1.20895 0.93240 1.02690 0.99109 1.21003 0.96531 1.00976 0.96465 1.20976 0.99203 0.98284 0.93269 1.46221 1.10950 1.30979 1.20766 1.22465 0.87750 1.03340 1.03999 1.21986 0.98717 1.03803 0.96321 1.69956 0.99997 1.23755 1.28984 1.21841 0.95993 0.96303 0.89969 1.20045 0.90957 0.97918 1.00342 1.22903 1.03063 1.03217 0.90200 1.22967 0.98356 0.96872 1.02210 0.91878 0.86650 0.87104 0.87289 0.87146 0.86656 0.82294 0.82661 0.86185 0.87719 0.88828 0.88697 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.77 12.84 55.43 0.71 -22.06 16 2 C 0.08 1.93 5.45 -17.82 -0.10 1.84 16 3 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.24 7.67 -34.44 -0.26 -13.50 16 8 H 0.07 1.70 7.50 -52.48 -0.39 1.31 16 9 C 0.28 6.39 2.67 -70.23 -0.19 6.21 16 10 H 0.09 2.31 5.72 -51.93 -0.30 2.02 16 11 C -0.05 -1.01 4.99 -104.62 -0.52 -1.53 16 12 C -0.11 -2.17 9.67 -39.58 -0.38 -2.55 16 13 C -0.13 -2.25 10.05 -39.59 -0.40 -2.65 16 14 C -0.14 -2.35 10.05 -39.59 -0.40 -2.75 16 15 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 16 C -0.10 -1.98 8.46 -39.59 -0.33 -2.32 16 17 N -0.41 -9.07 2.59 -109.30 -0.28 -9.36 16 18 C -0.04 -0.78 9.77 -16.56 -0.16 -0.94 16 19 C -0.06 -1.17 11.87 -17.82 -0.21 -1.38 16 20 N -0.51 -10.80 10.81 -10.81 -0.12 -10.91 16 21 C 0.22 4.72 7.44 -155.41 -1.16 3.56 16 22 C -0.07 -1.34 5.80 -91.77 -0.53 -1.87 16 23 C -0.16 -2.38 10.14 -26.69 -0.27 -2.65 16 24 C -0.17 -2.52 10.24 -26.69 -0.27 -2.80 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.12 2.27 7.96 -52.49 -0.42 1.86 16 27 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.12 2.25 6.22 -52.49 -0.33 1.92 16 31 H 0.16 2.93 6.67 -52.49 -0.35 2.58 16 32 H 0.16 2.56 8.06 -52.48 -0.42 2.13 16 33 H 0.12 2.28 7.20 -51.93 -0.37 1.90 16 34 H 0.10 1.68 7.88 -51.93 -0.41 1.27 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -27.86 315.50 -10.20 -38.07 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.66 Total: 10.54 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -5.59 Total: -26.04 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.31 Total: -42.33 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.86 -10.20 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.876 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds