Wall clock time and date at job start Mon Mar 30 2020 07:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48505 * 109.47264 * 240.00126 * 3 2 1 5 5 H 1.48503 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47102 * 119.99956 * 3 2 1 7 7 C 1.37874 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00171 * 174.90320 * 7 2 1 9 9 C 1.50699 * 119.99924 * 354.90389 * 7 2 1 10 10 H 1.08994 * 109.46938 * 335.06337 * 9 7 2 11 11 C 1.50705 * 109.47007 * 95.06206 * 9 7 2 12 12 C 1.38236 * 120.00009 * 233.97510 * 11 9 7 13 13 C 1.38230 * 119.99820 * 179.97438 * 12 11 9 14 14 C 1.38228 * 120.00337 * 359.97438 * 13 12 11 15 15 C 1.38236 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38229 * 120.00101 * 0.08619 * 15 14 13 17 17 N 1.46501 * 109.47185 * 215.06141 * 9 7 2 18 18 C 1.36881 * 126.39548 * 305.89695 * 17 9 7 19 19 C 1.34672 * 106.81568 * 179.97438 * 18 17 9 20 20 N 1.34119 * 108.02067 * 359.97438 * 19 18 17 21 21 C 1.30500 * 109.25966 * 359.72725 * 20 19 18 22 22 C 1.50703 * 125.65604 * 180.28934 * 21 20 19 23 23 C 1.53001 * 117.49658 * 8.92207 * 22 21 20 24 24 C 1.53004 * 117.49762 * 300.26179 * 22 21 20 25 25 H 0.97004 * 120.00255 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99850 * 0.02562 * 12 11 9 27 27 H 1.08007 * 119.99401 * 180.02562 * 13 12 11 28 28 H 1.08003 * 120.00309 * 179.71884 * 14 13 12 29 29 H 1.08000 * 119.99856 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00204 * 179.97438 * 16 15 14 31 31 H 1.07998 * 126.59616 * 0.03744 * 18 17 9 32 32 H 1.08007 * 125.98798 * 180.02562 * 19 18 17 33 33 H 1.08994 * 115.54880 * 154.59578 * 22 21 20 34 34 H 1.09001 * 117.49802 * 359.97438 * 23 22 21 35 35 H 1.08994 * 117.49556 * 145.02023 * 23 22 21 36 36 H 1.08992 * 117.50276 * 214.97721 * 24 22 21 37 37 H 1.09003 * 117.49927 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0836 9 6 1.2555 -2.4966 0.1148 10 1 0.3029 -2.3247 0.6158 11 6 1.0053 -3.0558 -1.2621 12 6 -0.2794 -3.3860 -1.6511 13 6 -0.5089 -3.8984 -2.9142 14 6 0.5461 -4.0802 -3.7886 15 6 1.8309 -3.7500 -3.3996 16 6 2.0607 -3.2397 -2.1357 17 7 2.0510 -3.4502 0.8921 18 6 3.3436 -3.8242 0.6411 19 6 3.6839 -4.7130 1.5939 20 7 2.6282 -4.8767 2.4047 21 6 1.6485 -4.1188 1.9941 22 6 0.2912 -4.0108 2.6401 23 6 0.0979 -4.6928 3.9960 24 6 -0.5467 -5.2870 2.7411 25 1 -0.4851 0.8401 -0.0004 26 1 -1.1039 -3.2428 -0.9683 27 1 -1.5128 -4.1560 -3.2182 28 1 0.3674 -4.4848 -4.7739 29 1 2.6553 -3.8924 -4.0827 30 1 3.0646 -2.9821 -1.8317 31 1 3.9704 -3.4733 -0.1653 32 1 4.6398 -5.2068 1.6889 33 1 -0.2380 -3.0736 2.4681 34 1 0.9523 -5.2200 4.4206 35 1 -0.5588 -4.2045 4.7159 36 1 -1.6271 -5.1894 2.6361 37 1 -0.1164 -6.2047 2.3400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704263407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:00 Heat of formation + Delta-G solvation = 92.983268 kcal Electronic energy + Delta-G solvation = -20184.372674 eV Core-core repulsion = 17313.584060 eV Total energy + Delta-G solvation = -2870.788614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.85805 -39.92244 -37.79539 -36.22825 -33.98984 -31.73919 -31.55531 -30.10050 -28.60157 -25.47570 -24.30021 -23.40348 -23.21022 -22.51639 -21.60728 -19.96620 -18.68304 -18.14780 -17.49504 -16.60606 -16.50465 -15.80947 -15.72821 -15.42560 -15.17338 -14.65181 -14.45865 -14.11962 -13.98679 -13.62291 -13.47651 -12.97710 -12.88472 -12.84334 -12.35464 -12.20822 -12.00077 -11.94928 -11.58933 -11.55438 -11.34609 -10.92859 -10.73501 -10.19646 -9.68678 -9.49723 -8.98709 -8.36391 -6.50244 0.59282 0.63624 1.31520 1.37140 1.39815 1.44901 2.21699 2.25389 2.36979 2.98507 3.10859 3.12225 3.59348 3.89602 3.99964 4.09765 4.17438 4.23689 4.30732 4.31802 4.50852 4.56444 4.69295 4.77288 4.83896 4.88177 4.90111 4.99597 5.18419 5.23825 5.29310 5.32679 5.47374 5.65668 5.68763 5.71892 5.82249 6.02679 6.13759 6.26967 6.45734 6.68671 7.19474 7.35041 8.69758 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.009136 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.608690 B = 3064.091275 C = 4048.579547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.033 3.967 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.286 3.714 10 H 0.065 0.935 11 C -0.072 4.072 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.134 4.134 15 C -0.130 4.130 16 C -0.118 4.118 17 N -0.424 5.424 18 C -0.054 4.054 19 C -0.061 4.061 20 N -0.521 5.521 21 C 0.207 3.793 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.146 4.146 25 H 0.271 0.729 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -6.994 -2.483 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.186 3.814 10 H 0.083 0.917 11 C -0.074 4.074 12 C -0.149 4.149 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.136 4.136 17 N -0.101 5.101 18 C -0.190 4.190 19 C -0.209 4.209 20 N -0.241 5.241 21 C -0.055 4.055 22 C -0.129 4.129 23 C -0.174 4.174 24 C -0.184 4.184 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.159 0.841 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.129 0.871 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.929 -7.257 -1.903 7.560 hybrid contribution 0.566 1.881 -0.683 2.079 sum -0.363 -5.377 -2.586 5.977 Atomic orbital electron populations 1.69972 1.07065 1.28592 1.48065 1.25638 0.95727 1.02384 0.93249 0.85584 0.78552 0.78543 0.78956 1.19229 1.20276 1.19957 1.21215 0.93530 0.90085 1.52811 0.92181 1.18098 0.92204 0.85044 0.86036 0.91694 1.20448 0.94061 0.95481 0.97399 1.21113 0.96092 0.99948 0.97791 1.21341 1.00292 0.99660 0.93201 1.21381 0.92347 1.01015 1.00447 1.21397 0.98226 0.99442 0.95689 1.21073 0.98597 0.99496 0.94482 1.46209 1.11578 1.31223 1.21131 1.22795 0.87496 1.03845 1.04855 1.22540 0.99507 1.03378 0.95517 1.69986 1.00447 1.24240 1.29465 1.22448 0.97113 0.96138 0.89809 1.20119 0.90577 0.98856 1.03335 1.22982 1.02958 1.01801 0.89626 1.23028 0.99287 0.94687 1.01379 0.91943 0.87650 0.84081 0.83233 0.83932 0.87105 0.81093 0.79520 0.87821 0.88451 0.86143 0.86177 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.38 12.84 21.45 0.28 -48.11 16 2 C 0.03 1.74 5.45 84.65 0.46 2.20 16 3 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.54 -27.91 7.67 25.60 0.20 -27.72 16 8 H 0.06 3.11 7.50 -2.91 -0.02 3.09 16 9 C 0.29 13.84 2.67 43.50 0.12 13.96 16 10 H 0.07 3.45 5.72 -2.39 -0.01 3.44 16 11 C -0.07 -3.21 4.99 -19.86 -0.10 -3.31 16 12 C -0.13 -5.34 9.67 22.27 0.22 -5.12 16 13 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 14 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 15 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 16 C -0.12 -4.70 8.46 22.27 0.19 -4.51 16 17 N -0.42 -19.28 2.59 -499.71 -1.29 -20.57 16 18 C -0.05 -2.22 9.77 83.09 0.81 -1.41 16 19 C -0.06 -2.39 11.87 83.53 0.99 -1.39 16 20 N -0.52 -22.29 10.81 -188.13 -2.03 -24.32 16 21 C 0.21 9.05 7.44 138.13 1.03 10.07 16 22 C -0.11 -4.10 5.80 -11.54 -0.07 -4.17 16 23 C -0.14 -4.04 10.14 30.62 0.31 -3.73 16 24 C -0.15 -4.33 10.24 30.62 0.31 -4.02 16 25 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.11 4.36 7.96 -2.91 -0.02 4.33 16 27 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 28 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.11 4.37 6.22 -2.91 -0.02 4.35 16 31 H 0.17 6.41 6.67 -2.91 -0.02 6.39 16 32 H 0.19 5.87 8.06 -2.91 -0.02 5.85 16 33 H 0.10 4.19 7.20 -2.39 -0.02 4.17 16 34 H 0.10 3.05 7.88 -2.39 -0.02 3.03 16 35 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -61.38 315.50 5.18 -56.20 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 1.07 Total: 34.04 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 5.14 Total: -40.92 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.05 Total: -93.00 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -61.38 5.18 -56.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.187 kcal (2) G-P(sol) polarization free energy of solvation -61.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds