Wall clock time and date at job start Mon Mar 30 2020 07:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99629 * 2 1 4 4 H 1.48502 * 109.47129 * 272.94931 * 3 2 1 5 5 H 1.48506 * 109.47248 * 32.94976 * 3 2 1 6 6 H 1.48500 * 109.47166 * 152.94811 * 3 2 1 7 7 C 1.37875 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 354.19158 * 7 2 1 9 9 C 1.50698 * 119.99711 * 174.18952 * 7 2 1 10 10 H 1.09002 * 109.47413 * 34.69017 * 9 7 2 11 11 C 1.50701 * 109.47246 * 274.68903 * 9 7 2 12 12 C 1.38238 * 119.99592 * 307.20144 * 11 9 7 13 13 C 1.38240 * 119.99620 * 179.80708 * 12 11 9 14 14 C 1.38229 * 119.99951 * 0.40268 * 13 12 11 15 15 C 1.38236 * 120.00104 * 359.84808 * 14 13 12 16 16 C 1.38227 * 120.00157 * 359.96265 * 15 14 13 17 17 N 1.46505 * 109.47017 * 154.68919 * 9 7 2 18 18 C 1.36882 * 126.39281 * 54.15109 * 17 9 7 19 19 C 1.34668 * 106.81291 * 180.02562 * 18 17 9 20 20 N 1.34127 * 108.02278 * 0.02562 * 19 18 17 21 21 C 1.30498 * 109.25742 * 359.97438 * 20 19 18 22 22 C 1.50695 * 125.65199 * 180.27006 * 21 20 19 23 23 C 1.53002 * 117.50138 * 8.43161 * 22 21 20 24 24 C 1.53001 * 117.49647 * 299.77241 * 22 21 20 25 25 H 0.96993 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00209 * 359.97438 * 12 11 9 27 27 H 1.08002 * 119.99926 * 180.23031 * 13 12 11 28 28 H 1.08004 * 120.00192 * 179.83299 * 14 13 12 29 29 H 1.07998 * 119.99861 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.00468 * 179.97438 * 16 15 14 31 31 H 1.07996 * 126.59508 * 0.05767 * 18 17 9 32 32 H 1.08000 * 125.98991 * 180.02562 * 19 18 17 33 33 H 1.09002 * 115.55088 * 154.11044 * 22 21 20 34 34 H 1.09002 * 117.49667 * 0.02562 * 23 22 21 35 35 H 1.08994 * 117.49564 * 145.01945 * 23 22 21 36 36 H 1.09000 * 117.50016 * 214.97689 * 24 22 21 37 37 H 1.09000 * 117.49770 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4342 2.0825 -1.3982 5 1 1.4791 2.6339 0.7615 6 1 3.5765 1.4231 0.6367 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0956 9 6 3.5058 -1.1973 -0.1316 10 1 3.9171 -0.3243 0.3753 11 6 3.8818 -1.1547 -1.5903 12 6 3.3487 -2.0794 -2.4687 13 6 3.6905 -2.0379 -3.8076 14 6 4.5718 -1.0769 -4.2664 15 6 5.1090 -0.1554 -3.3870 16 6 4.7642 -0.1945 -2.0490 17 7 4.0469 -2.4152 0.4768 18 6 3.6794 -3.7011 0.1851 19 6 4.4210 -4.5058 0.9701 20 7 5.2191 -3.7323 1.7210 21 6 5.0006 -2.4789 1.4308 22 6 5.7011 -1.2983 2.0526 23 6 6.8933 -1.5857 2.9675 24 6 5.5657 -1.1131 3.5653 25 1 -0.4850 0.8400 -0.0004 26 1 2.6631 -2.8326 -2.1096 27 1 3.2711 -2.7580 -4.4946 28 1 4.8410 -1.0461 -5.3119 29 1 5.7979 0.5951 -3.7454 30 1 5.1841 0.5252 -1.3618 31 1 2.9378 -4.0109 -0.5362 32 1 4.3803 -5.5848 0.9913 33 1 5.7439 -0.3995 1.4374 34 1 7.1713 -2.6287 3.1192 35 1 7.7203 -0.8759 2.9543 36 1 5.5201 -0.0926 3.9454 37 1 4.9698 -1.8450 4.1106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704263408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:04 Heat of formation + Delta-G solvation = 111.156563 kcal Electronic energy + Delta-G solvation = -20277.965468 eV Core-core repulsion = 17407.964907 eV Total energy + Delta-G solvation = -2870.000561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39892 -38.68207 -36.58407 -34.63335 -32.30043 -30.51545 -30.24350 -28.66939 -27.27849 -23.50790 -22.97169 -22.16084 -22.04748 -21.16667 -20.07854 -18.53151 -17.20545 -16.68937 -16.19226 -15.20603 -15.11572 -14.47570 -14.16013 -13.97203 -13.72062 -13.25500 -13.00157 -12.86286 -12.72843 -12.31174 -12.17675 -11.58699 -11.30856 -11.23866 -11.16061 -10.78622 -10.63729 -10.34283 -10.21285 -10.05600 -9.75924 -9.32344 -8.94294 -8.66922 -8.42661 -8.20466 -7.51889 -6.45375 -4.50892 1.82310 1.90124 2.83714 3.05054 3.08076 3.14267 3.66032 3.73412 4.07552 4.32163 4.40873 4.83161 4.90407 5.16613 5.22859 5.31075 5.36100 5.39144 5.49419 5.61333 5.81369 5.88894 5.91126 6.00015 6.03755 6.06900 6.22599 6.30354 6.45372 6.46594 6.50147 6.56651 6.89678 6.95408 7.02592 7.14262 7.35837 7.49408 7.55310 7.88220 8.20432 8.56343 8.84334 9.10500 10.65419 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.009218 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.923085 B = 3036.723401 C = 3714.120040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.090 3.910 3 Si 0.861 3.139 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.088 0.912 9 C 0.254 3.746 10 H 0.074 0.926 11 C -0.069 4.069 12 C -0.082 4.082 13 C -0.127 4.127 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.128 4.128 17 N -0.410 5.410 18 C -0.030 4.030 19 C -0.056 4.056 20 N -0.502 5.502 21 C 0.219 3.781 22 C -0.077 4.077 23 C -0.155 4.155 24 C -0.162 4.162 25 H 0.272 0.728 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 -0.444 -2.255 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.106 0.894 9 C 0.153 3.847 10 H 0.091 0.909 11 C -0.071 4.071 12 C -0.100 4.100 13 C -0.145 4.145 14 C -0.153 4.153 15 C -0.144 4.144 16 C -0.147 4.147 17 N -0.088 5.088 18 C -0.166 4.166 19 C -0.205 4.205 20 N -0.222 5.222 21 C -0.042 4.042 22 C -0.097 4.097 23 C -0.193 4.193 24 C -0.200 4.200 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.889 -0.453 -1.749 10.053 hybrid contribution -0.578 1.269 -0.846 1.631 sum 9.311 0.816 -2.595 9.700 Atomic orbital electron populations 1.69849 1.06132 1.27750 1.47084 1.24839 0.94787 0.98797 0.93215 0.87032 0.80616 0.84137 0.79533 1.19046 1.20402 1.18470 1.20903 0.86921 0.95926 1.52664 0.89380 1.18746 0.96428 0.82900 0.86665 0.90866 1.20650 0.93872 0.94826 0.97723 1.21013 0.97943 0.98544 0.92531 1.21103 0.98625 0.98999 0.95762 1.20969 0.98881 0.96440 0.98970 1.20958 1.00682 0.99222 0.93524 1.21014 0.98282 0.99507 0.95853 1.45725 1.27412 1.07436 1.28190 1.22508 1.04800 0.83731 1.05604 1.22016 0.99794 0.98969 0.99747 1.69971 1.25864 0.99989 1.26350 1.21826 0.94517 0.93280 0.94626 1.19976 1.02060 0.94869 0.92785 1.22926 0.90978 1.03117 1.02241 1.22990 1.00489 1.02392 0.94176 0.91825 0.85890 0.86618 0.86873 0.86805 0.87102 0.81895 0.82354 0.87022 0.87520 0.88817 0.88610 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.70 13.96 55.43 0.77 -23.92 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.86 19.65 26.91 -169.99 -4.57 15.07 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.50 5.97 56.52 0.34 -5.17 16 7 C -0.53 -13.58 8.20 -34.44 -0.28 -13.86 16 8 H 0.09 2.49 7.66 -52.49 -0.40 2.08 16 9 C 0.25 5.65 2.18 -70.23 -0.15 5.50 16 10 H 0.07 1.65 3.73 -51.93 -0.19 1.46 16 11 C -0.07 -1.43 4.57 -104.62 -0.48 -1.91 16 12 C -0.08 -1.59 8.45 -39.58 -0.33 -1.93 16 13 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 14 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 15 C -0.13 -2.06 10.05 -39.59 -0.40 -2.45 16 16 C -0.13 -2.40 9.24 -39.59 -0.37 -2.76 16 17 N -0.41 -8.80 2.59 -109.30 -0.28 -9.08 16 18 C -0.03 -0.60 9.76 -16.56 -0.16 -0.76 16 19 C -0.06 -1.09 11.87 -17.81 -0.21 -1.30 16 20 N -0.50 -10.36 10.80 -10.82 -0.12 -10.47 16 21 C 0.22 4.51 7.44 -155.42 -1.16 3.36 16 22 C -0.08 -1.34 5.72 -91.77 -0.52 -1.87 16 23 C -0.15 -2.21 10.14 -26.69 -0.27 -2.48 16 24 C -0.16 -2.45 10.24 -26.69 -0.27 -2.73 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.12 2.39 6.29 -52.49 -0.33 2.06 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.93 7.96 -52.49 -0.42 1.52 16 31 H 0.16 3.00 6.73 -52.49 -0.35 2.65 16 32 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 33 H 0.11 1.88 7.36 -51.93 -0.38 1.50 16 34 H 0.11 1.61 7.88 -51.93 -0.41 1.20 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -29.32 310.43 -9.67 -38.99 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.65 Total: 10.64 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -5.50 Total: -25.90 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.37 Total: -43.48 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.57 Total: 15.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.32 -9.67 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.143 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds