Wall clock time and date at job start Mon Mar 30 2020 07:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99629 * 2 1 4 4 H 1.48502 * 109.47129 * 272.94931 * 3 2 1 5 5 H 1.48506 * 109.47248 * 32.94976 * 3 2 1 6 6 H 1.48500 * 109.47166 * 152.94811 * 3 2 1 7 7 C 1.37875 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 354.19158 * 7 2 1 9 9 C 1.50698 * 119.99711 * 174.18952 * 7 2 1 10 10 H 1.09002 * 109.47413 * 34.69017 * 9 7 2 11 11 C 1.50701 * 109.47246 * 274.68903 * 9 7 2 12 12 C 1.38238 * 119.99592 * 307.20144 * 11 9 7 13 13 C 1.38240 * 119.99620 * 179.80708 * 12 11 9 14 14 C 1.38229 * 119.99951 * 0.40268 * 13 12 11 15 15 C 1.38236 * 120.00104 * 359.84808 * 14 13 12 16 16 C 1.38227 * 120.00157 * 359.96265 * 15 14 13 17 17 N 1.46505 * 109.47017 * 154.68919 * 9 7 2 18 18 C 1.36882 * 126.39281 * 54.15109 * 17 9 7 19 19 C 1.34668 * 106.81291 * 180.02562 * 18 17 9 20 20 N 1.34127 * 108.02278 * 0.02562 * 19 18 17 21 21 C 1.30498 * 109.25742 * 359.97438 * 20 19 18 22 22 C 1.50695 * 125.65199 * 180.27006 * 21 20 19 23 23 C 1.53002 * 117.50138 * 8.43161 * 22 21 20 24 24 C 1.53001 * 117.49647 * 299.77241 * 22 21 20 25 25 H 0.96993 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00209 * 359.97438 * 12 11 9 27 27 H 1.08002 * 119.99926 * 180.23031 * 13 12 11 28 28 H 1.08004 * 120.00192 * 179.83299 * 14 13 12 29 29 H 1.07998 * 119.99861 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.00468 * 179.97438 * 16 15 14 31 31 H 1.07996 * 126.59508 * 0.05767 * 18 17 9 32 32 H 1.08000 * 125.98991 * 180.02562 * 19 18 17 33 33 H 1.09002 * 115.55088 * 154.11044 * 22 21 20 34 34 H 1.09002 * 117.49667 * 0.02562 * 23 22 21 35 35 H 1.08994 * 117.49564 * 145.01945 * 23 22 21 36 36 H 1.09000 * 117.50016 * 214.97689 * 24 22 21 37 37 H 1.09000 * 117.49770 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4342 2.0825 -1.3982 5 1 1.4791 2.6339 0.7615 6 1 3.5765 1.4231 0.6367 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0956 9 6 3.5058 -1.1973 -0.1316 10 1 3.9171 -0.3243 0.3753 11 6 3.8818 -1.1547 -1.5903 12 6 3.3487 -2.0794 -2.4687 13 6 3.6905 -2.0379 -3.8076 14 6 4.5718 -1.0769 -4.2664 15 6 5.1090 -0.1554 -3.3870 16 6 4.7642 -0.1945 -2.0490 17 7 4.0469 -2.4152 0.4768 18 6 3.6794 -3.7011 0.1851 19 6 4.4210 -4.5058 0.9701 20 7 5.2191 -3.7323 1.7210 21 6 5.0006 -2.4789 1.4308 22 6 5.7011 -1.2983 2.0526 23 6 6.8933 -1.5857 2.9675 24 6 5.5657 -1.1131 3.5653 25 1 -0.4850 0.8400 -0.0004 26 1 2.6631 -2.8326 -2.1096 27 1 3.2711 -2.7580 -4.4946 28 1 4.8410 -1.0461 -5.3119 29 1 5.7979 0.5951 -3.7454 30 1 5.1841 0.5252 -1.3618 31 1 2.9378 -4.0109 -0.5362 32 1 4.3803 -5.5848 0.9913 33 1 5.7439 -0.3995 1.4374 34 1 7.1713 -2.6287 3.1192 35 1 7.7203 -0.8759 2.9543 36 1 5.5201 -0.0926 3.9454 37 1 4.9698 -1.8450 4.1106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704263408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:03 Heat of formation + Delta-G solvation = 96.736209 kcal Electronic energy + Delta-G solvation = -20278.590782 eV Core-core repulsion = 17407.964907 eV Total energy + Delta-G solvation = -2870.625874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.96426 -40.06780 -37.82419 -36.30221 -34.21577 -31.90357 -31.67731 -30.18680 -29.03137 -25.22999 -24.38032 -23.50921 -23.23079 -22.61583 -21.65150 -20.03082 -19.05824 -18.27761 -17.63323 -16.67436 -16.55075 -16.01135 -15.66619 -15.33511 -15.19913 -14.80318 -14.71702 -14.33626 -14.15156 -13.87452 -13.66434 -13.08581 -12.93086 -12.86213 -12.35849 -12.23303 -12.07675 -11.82727 -11.63468 -11.55911 -11.37487 -11.01228 -10.85444 -10.30617 -9.78110 -9.61650 -9.05927 -8.47765 -6.57380 0.44886 0.54307 1.23220 1.25457 1.29824 1.32905 2.15150 2.17897 2.20585 2.86656 2.99231 3.08549 3.51832 3.83152 3.90452 3.97825 4.05173 4.16700 4.20678 4.25222 4.27808 4.40931 4.60901 4.69538 4.78833 4.78924 4.83837 4.96579 5.07885 5.14617 5.17049 5.19605 5.33167 5.57118 5.62413 5.64100 5.78589 5.98148 6.00876 6.16106 6.44852 6.53281 7.07717 7.26536 8.67006 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.009218 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.923085 B = 3036.723401 C = 3714.120040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.037 3.963 3 Si 0.916 3.084 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.233 1.233 7 C -0.525 4.525 8 H 0.044 0.956 9 C 0.265 3.735 10 H 0.073 0.927 11 C -0.096 4.096 12 C -0.107 4.107 13 C -0.129 4.129 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.143 4.143 17 N -0.423 5.423 18 C -0.051 4.051 19 C -0.057 4.057 20 N -0.517 5.517 21 C 0.211 3.789 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.158 4.158 25 H 0.273 0.727 26 H 0.104 0.896 27 H 0.141 0.859 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 1.037 -3.322 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.164 4.164 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.563 4.563 8 H 0.062 0.938 9 C 0.163 3.837 10 H 0.091 0.909 11 C -0.097 4.097 12 C -0.126 4.126 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.161 4.161 17 N -0.101 5.101 18 C -0.186 4.186 19 C -0.205 4.205 20 N -0.237 5.237 21 C -0.051 4.051 22 C -0.131 4.131 23 C -0.166 4.166 24 C -0.196 4.196 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.159 0.841 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.140 0.860 31 H 0.183 0.817 32 H 0.205 0.795 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.842 0.998 -2.815 13.185 hybrid contribution -1.474 0.659 -0.561 1.709 sum 11.368 1.656 -3.376 11.974 Atomic orbital electron populations 1.69988 1.07982 1.28666 1.49619 1.25630 0.95438 1.02434 0.92940 0.86147 0.80488 0.79461 0.80037 1.18304 1.20376 1.15698 1.20962 0.89136 0.94224 1.51941 0.93784 1.18492 0.93723 0.83199 0.88242 0.90911 1.20505 0.96145 0.96674 0.96380 1.21048 0.98658 0.98719 0.94148 1.21436 0.98584 0.99879 0.94793 1.21466 0.97153 0.94912 1.00891 1.21413 1.00463 0.99762 0.92431 1.21255 0.98195 0.99163 0.97517 1.45739 1.28058 1.07479 1.28869 1.22729 1.05552 0.83852 1.06478 1.22525 0.98878 1.00296 0.98768 1.70012 1.26533 1.00312 1.26858 1.22569 0.94136 0.94373 0.93992 1.20231 1.04682 0.94204 0.94002 1.23006 0.91036 1.03444 0.99065 1.23071 1.00912 1.03482 0.92139 0.91811 0.87759 0.84119 0.82889 0.83134 0.86018 0.81714 0.79482 0.86446 0.88540 0.85357 0.86053 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 2 C 0.04 2.03 5.47 84.65 0.46 2.50 16 3 Si 0.92 40.35 26.91 68.60 1.85 42.20 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.23 -9.16 5.97 99.48 0.59 -8.57 16 7 C -0.52 -28.35 8.20 25.60 0.21 -28.14 16 8 H 0.04 2.69 7.66 -2.91 -0.02 2.67 16 9 C 0.27 12.00 2.18 43.50 0.09 12.10 16 10 H 0.07 3.25 3.73 -2.39 -0.01 3.24 16 11 C -0.10 -3.93 4.57 -19.86 -0.09 -4.02 16 12 C -0.11 -4.22 8.45 22.27 0.19 -4.03 16 13 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 14 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 15 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 16 C -0.14 -5.02 9.24 22.27 0.21 -4.82 16 17 N -0.42 -18.60 2.59 -499.71 -1.29 -19.89 16 18 C -0.05 -2.11 9.76 83.09 0.81 -1.30 16 19 C -0.06 -2.20 11.87 83.52 0.99 -1.21 16 20 N -0.52 -21.35 10.80 -188.14 -2.03 -23.38 16 21 C 0.21 8.69 7.44 138.13 1.03 9.72 16 22 C -0.11 -3.73 5.72 -11.54 -0.07 -3.79 16 23 C -0.13 -3.32 10.14 30.62 0.31 -3.01 16 24 C -0.16 -4.48 10.24 30.62 0.31 -4.17 16 25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.10 4.34 6.29 -2.91 -0.02 4.32 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 28 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 30 H 0.12 3.90 7.96 -2.91 -0.02 3.88 16 31 H 0.17 6.57 6.73 -2.91 -0.02 6.55 16 32 H 0.19 5.90 8.06 -2.91 -0.02 5.88 16 33 H 0.12 3.73 7.36 -2.39 -0.02 3.72 16 34 H 0.10 2.73 7.88 -2.39 -0.02 2.71 16 35 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -66.53 310.43 4.91 -61.62 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.96 Total: 34.36 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 5.13 Total: -40.56 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.03 Total: -97.63 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.85 Total: 42.20 kcal Total: -66.53 4.91 -61.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.358 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds