Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.52999 * 109.47255 * 119.99789 * 2 1 3 5 5 C 1.50701 * 109.47752 * 183.44596 * 4 2 1 6 6 H 1.08002 * 119.99287 * 355.39361 * 5 4 2 7 7 C 1.37874 * 120.00467 * 175.39322 * 5 4 2 8 8 N 1.31513 * 119.99952 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47506 * 89.99814 * 9 7 5 11 11 H 1.48501 * 109.47070 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99566 * 9 7 5 13 13 N 1.46894 * 109.47346 * 239.99880 * 2 1 3 14 14 C 1.46897 * 111.00342 * 73.33599 * 13 2 1 15 15 C 1.46909 * 111.00074 * 309.37945 * 13 2 1 16 16 C 1.50696 * 109.46986 * 190.00057 * 15 13 2 17 17 C 1.38660 * 120.79570 * 260.26441 * 16 15 13 18 18 C 1.38180 * 119.17905 * 180.29617 * 17 16 15 19 19 N 1.31886 * 120.79572 * 359.68737 * 18 17 16 20 20 C 1.31845 * 121.73454 * 0.02562 * 19 18 17 21 21 C 1.38345 * 120.74955 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.43702 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46775 * 60.00072 * 1 2 3 24 24 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47480 * 300.00094 * 1 2 3 26 26 H 1.09002 * 109.47200 * 303.45177 * 4 2 1 27 27 H 1.09009 * 109.47142 * 63.44546 * 4 2 1 28 28 H 0.96999 * 119.99682 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.46847 * 290.09715 * 14 13 2 30 30 H 1.09007 * 109.46987 * 50.09031 * 14 13 2 31 31 H 1.08992 * 109.47563 * 170.09488 * 14 13 2 32 32 H 1.09002 * 109.46397 * 70.00345 * 15 13 2 33 33 H 1.08997 * 109.46959 * 309.99829 * 15 13 2 34 34 H 1.08003 * 120.40771 * 0.03200 * 17 16 15 35 35 H 1.08005 * 119.60378 * 179.70386 * 18 17 16 36 36 H 1.08010 * 119.62314 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5446 -0.6477 1.2928 6 1 4.0874 -0.2034 0.4716 7 6 4.2281 -1.1477 2.3808 8 7 5.5411 -1.0831 2.4189 9 14 3.2891 -1.9169 3.8007 10 1 3.1199 -3.3712 3.5523 11 1 4.0464 -1.7150 5.0621 12 1 1.9546 -1.2760 3.9167 13 7 2.0197 -0.6925 -1.1994 14 6 1.8244 0.1315 -2.3997 15 6 1.3748 -2.0038 -1.3504 16 6 2.0695 -2.7830 -2.4371 17 6 1.5349 -2.8508 -3.7147 18 6 2.1966 -3.5799 -4.6842 19 7 3.3265 -4.2015 -4.4078 20 6 3.8678 -4.1550 -3.2065 21 6 3.2621 -3.4456 -2.1848 22 17 3.9815 -3.3904 -0.6058 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6270 -0.2443 2.1382 27 1 1.7279 -1.7652 1.2190 28 1 6.0219 -1.4352 3.1842 29 1 0.7603 0.1959 -2.6270 30 1 2.2191 1.1319 -2.2218 31 1 2.3489 -0.3217 -3.2408 32 1 0.3269 -1.8648 -1.6161 33 1 1.4419 -2.5520 -0.4107 34 1 0.6104 -2.3435 -3.9480 35 1 1.7838 -3.6413 -5.6803 36 1 4.7946 -4.6766 -3.0179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704411204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = 35.585309 kcal Electronic energy + Delta-G solvation = -18908.892005 eV Core-core repulsion = 16033.181579 eV Total energy + Delta-G solvation = -2875.710426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15889 -37.96540 -35.87929 -33.52103 -32.35908 -30.81544 -30.62309 -27.82228 -27.26143 -24.51025 -23.28596 -22.54454 -21.53831 -18.90633 -16.76814 -16.55722 -16.49256 -15.77684 -15.13087 -14.72928 -14.19661 -14.03945 -13.75418 -13.62688 -13.00377 -12.47441 -12.21922 -12.12355 -11.92690 -11.85949 -11.69636 -11.40232 -11.10533 -10.91221 -10.75863 -10.40496 -10.13020 -9.79551 -9.56133 -9.37399 -9.31609 -8.99724 -8.57036 -8.37397 -7.62355 -5.87045 -3.79194 1.13601 1.27402 2.73415 3.34554 3.43129 3.44817 3.79001 4.49660 4.54052 4.56014 4.79935 4.85741 5.09199 5.39604 5.43751 5.51316 5.54614 5.61139 5.68748 5.70123 5.85302 5.89841 5.96312 6.07308 6.21383 6.32041 6.36191 6.50338 6.64738 6.73048 7.09331 7.31221 7.65487 7.76195 7.95358 7.96298 8.76146 9.28203 9.76361 11.26548 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.008078 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.422880 B = 3465.369632 C = 4376.401947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.079 0.921 4 C -0.008 4.008 5 C -0.475 4.475 6 H 0.082 0.918 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.500 5.500 14 C 0.024 3.976 15 C 0.089 3.911 16 C -0.023 4.023 17 C -0.161 4.161 18 C 0.086 3.914 19 N -0.478 5.478 20 C 0.100 3.900 21 C -0.075 4.075 22 Cl 0.007 6.993 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.018 0.982 27 H 0.010 0.990 28 H 0.257 0.743 29 H 0.016 0.984 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -3.081 -10.964 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.097 0.903 4 C -0.045 4.045 5 C -0.513 4.513 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.546 5.546 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.223 5.223 14 C -0.124 4.124 15 C -0.038 4.038 16 C -0.032 4.032 17 C -0.181 4.181 18 C -0.071 4.071 19 N -0.188 5.188 20 C -0.058 4.058 21 C -0.104 4.104 22 Cl 0.036 6.964 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.510 -3.654 -11.288 14.601 hybrid contribution -1.678 0.153 1.485 2.246 sum -10.188 -3.501 -9.803 14.566 Atomic orbital electron populations 1.22580 0.99625 1.01321 1.01117 1.21761 0.89882 0.98484 0.91009 0.90308 1.19716 0.98454 0.94828 0.91547 1.20948 0.88777 1.37295 1.04280 0.90036 1.24913 0.94479 0.96239 0.97650 1.69901 1.06202 1.47933 1.30517 0.87147 0.80740 0.80217 0.83427 1.20647 1.21725 1.19280 1.62035 1.56902 1.01214 1.02149 1.22416 0.98103 0.98270 0.93654 1.21121 0.93893 0.91622 0.97203 1.20277 0.93262 0.94507 0.95176 1.22027 1.01854 1.01310 0.92953 1.22661 0.91372 0.93665 0.99415 1.67724 1.11138 1.19421 1.20474 1.22785 0.99403 0.96319 0.87253 1.22339 0.95836 1.00177 0.92086 1.98555 1.81424 1.96675 1.19727 0.93754 0.92938 0.92377 0.96348 0.97198 0.93273 0.96536 0.91582 0.92363 0.94187 0.88216 0.84835 0.82800 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 8.40 37.16 0.31 -2.50 16 2 C 0.10 1.77 2.26 -67.72 -0.15 1.62 16 3 H 0.08 1.51 7.86 -51.93 -0.41 1.10 16 4 C -0.01 -0.18 3.51 -27.88 -0.10 -0.28 16 5 C -0.47 -12.57 8.90 -34.44 -0.31 -12.88 16 6 H 0.08 2.41 7.95 -52.49 -0.42 1.99 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.86 21.36 27.56 -169.99 -4.69 16.67 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.41 6.41 56.52 0.36 -6.04 16 13 N -0.50 -8.78 4.32 -236.33 -1.02 -9.80 16 14 C 0.02 0.35 8.85 60.06 0.53 0.89 16 15 C 0.09 1.43 3.43 -4.97 -0.02 1.41 16 16 C -0.02 -0.35 4.61 -104.28 -0.48 -0.83 16 17 C -0.16 -2.01 9.04 -39.45 -0.36 -2.37 16 18 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 19 N -0.48 -7.00 10.36 -13.22 -0.14 -7.13 16 20 C 0.10 1.52 10.99 -17.51 -0.19 1.33 16 21 C -0.07 -1.25 6.34 -39.36 -0.25 -1.50 16 22 Cl 0.01 0.13 27.24 -51.86 -1.41 -1.28 16 23 H 0.04 0.59 7.04 -51.93 -0.37 0.22 16 24 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.42 6.88 -51.93 -0.36 0.07 16 27 H 0.01 0.22 6.02 -51.92 -0.31 -0.09 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.21 7.10 -51.92 -0.37 -0.16 16 30 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 31 H 0.06 0.85 7.02 -51.93 -0.36 0.48 16 32 H 0.04 0.56 6.67 -51.93 -0.35 0.21 16 33 H 0.10 1.80 5.52 -51.93 -0.29 1.52 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.16 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -29.95 304.16 -8.04 -37.99 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.84 Total: -2.12 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.30 Total: -12.48 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.38 Total: -43.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.69 Total: 16.67 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.41 Total: -1.28 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.95 -8.04 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704411204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.577 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds