Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.52999 * 109.47255 * 119.99789 * 2 1 3 5 5 C 1.50701 * 109.47752 * 183.44596 * 4 2 1 6 6 H 1.08002 * 119.99287 * 355.39361 * 5 4 2 7 7 C 1.37874 * 120.00467 * 175.39322 * 5 4 2 8 8 N 1.31513 * 119.99952 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47506 * 89.99814 * 9 7 5 11 11 H 1.48501 * 109.47070 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99566 * 9 7 5 13 13 N 1.46894 * 109.47346 * 239.99880 * 2 1 3 14 14 C 1.46897 * 111.00342 * 73.33599 * 13 2 1 15 15 C 1.46909 * 111.00074 * 309.37945 * 13 2 1 16 16 C 1.50696 * 109.46986 * 190.00057 * 15 13 2 17 17 C 1.38660 * 120.79570 * 260.26441 * 16 15 13 18 18 C 1.38180 * 119.17905 * 180.29617 * 17 16 15 19 19 N 1.31886 * 120.79572 * 359.68737 * 18 17 16 20 20 C 1.31845 * 121.73454 * 0.02562 * 19 18 17 21 21 C 1.38345 * 120.74955 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.43702 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46775 * 60.00072 * 1 2 3 24 24 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47480 * 300.00094 * 1 2 3 26 26 H 1.09002 * 109.47200 * 303.45177 * 4 2 1 27 27 H 1.09009 * 109.47142 * 63.44546 * 4 2 1 28 28 H 0.96999 * 119.99682 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.46847 * 290.09715 * 14 13 2 30 30 H 1.09007 * 109.46987 * 50.09031 * 14 13 2 31 31 H 1.08992 * 109.47563 * 170.09488 * 14 13 2 32 32 H 1.09002 * 109.46397 * 70.00345 * 15 13 2 33 33 H 1.08997 * 109.46959 * 309.99829 * 15 13 2 34 34 H 1.08003 * 120.40771 * 0.03200 * 17 16 15 35 35 H 1.08005 * 119.60378 * 179.70386 * 18 17 16 36 36 H 1.08010 * 119.62314 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5446 -0.6477 1.2928 6 1 4.0874 -0.2034 0.4716 7 6 4.2281 -1.1477 2.3808 8 7 5.5411 -1.0831 2.4189 9 14 3.2891 -1.9169 3.8007 10 1 3.1199 -3.3712 3.5523 11 1 4.0464 -1.7150 5.0621 12 1 1.9546 -1.2760 3.9167 13 7 2.0197 -0.6925 -1.1994 14 6 1.8244 0.1315 -2.3997 15 6 1.3748 -2.0038 -1.3504 16 6 2.0695 -2.7830 -2.4371 17 6 1.5349 -2.8508 -3.7147 18 6 2.1966 -3.5799 -4.6842 19 7 3.3265 -4.2015 -4.4078 20 6 3.8678 -4.1550 -3.2065 21 6 3.2621 -3.4456 -2.1848 22 17 3.9815 -3.3904 -0.6058 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6270 -0.2443 2.1382 27 1 1.7279 -1.7652 1.2190 28 1 6.0219 -1.4352 3.1842 29 1 0.7603 0.1959 -2.6270 30 1 2.2191 1.1319 -2.2218 31 1 2.3489 -0.3217 -3.2408 32 1 0.3269 -1.8648 -1.6161 33 1 1.4419 -2.5520 -0.4107 34 1 0.6104 -2.3435 -3.9480 35 1 1.7838 -3.6413 -5.6803 36 1 4.7946 -4.6766 -3.0179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704411204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = 16.357313 kcal Electronic energy + Delta-G solvation = -18909.725793 eV Core-core repulsion = 16033.181579 eV Total energy + Delta-G solvation = -2876.544214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28237 -39.28428 -37.25263 -35.10547 -34.05120 -32.13533 -31.90669 -29.44638 -28.45957 -25.83897 -24.38240 -24.16521 -22.91046 -20.33060 -18.65094 -17.87404 -17.70612 -16.92357 -16.55812 -16.19585 -15.71003 -15.37326 -14.89661 -14.82007 -14.54395 -14.08258 -13.83415 -13.56174 -13.24846 -13.07472 -13.00313 -12.75964 -12.65586 -12.47636 -12.11036 -11.84337 -11.73427 -11.65722 -11.29915 -11.03566 -10.60168 -10.50099 -10.42930 -9.78027 -8.86712 -8.04874 -5.98458 0.04463 0.14671 1.35011 1.37499 1.44880 1.45524 2.47076 2.68859 3.21939 3.37451 3.52494 3.64339 3.81042 4.03596 4.18671 4.30445 4.38644 4.46554 4.49324 4.64714 4.67566 4.71613 4.79404 4.94087 5.04814 5.07809 5.17814 5.22868 5.27393 5.30502 5.61129 5.63492 5.85513 6.37164 6.43011 6.65196 6.88527 7.08482 7.59456 9.11990 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.008078 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.422880 B = 3465.369632 C = 4376.401947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 H 0.065 0.935 4 C -0.007 4.007 5 C -0.451 4.451 6 H 0.041 0.959 7 C 0.012 3.988 8 N -0.953 5.953 9 Si 0.909 3.091 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.247 1.247 13 N -0.530 5.530 14 C 0.030 3.970 15 C 0.095 3.905 16 C -0.034 4.034 17 C -0.147 4.147 18 C 0.094 3.906 19 N -0.492 5.492 20 C 0.094 3.906 21 C -0.095 4.095 22 Cl -0.038 7.038 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.012 0.988 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.171 0.829 35 H 0.196 0.804 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 -3.027 -12.820 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.008 4.008 3 H 0.083 0.917 4 C -0.044 4.044 5 C -0.490 4.490 6 H 0.059 0.941 7 C -0.182 4.182 8 N -0.596 5.596 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.222 1.222 12 H -0.170 1.170 13 N -0.253 5.253 14 C -0.118 4.118 15 C -0.032 4.032 16 C -0.043 4.043 17 C -0.167 4.167 18 C -0.063 4.063 19 N -0.201 5.201 20 C -0.063 4.063 21 C -0.124 4.124 22 Cl -0.009 7.009 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.188 0.812 35 H 0.213 0.787 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.778 -3.598 -13.155 18.020 hybrid contribution -0.690 0.156 1.864 1.994 sum -12.468 -3.442 -11.291 17.169 Atomic orbital electron populations 1.22432 0.96327 1.02181 1.02554 1.21521 0.92425 0.97015 0.89790 0.91673 1.19665 0.95392 0.95499 0.93881 1.21030 0.90932 1.34848 1.02184 0.94069 1.25569 0.94994 0.97321 1.00336 1.70060 1.07988 1.50243 1.31357 0.86275 0.80383 0.79497 0.80252 1.20523 1.22241 1.17045 1.61873 1.58330 1.02274 1.02852 1.22372 0.99849 0.97341 0.92263 1.21032 0.95332 0.90520 0.96366 1.20412 0.92930 0.94554 0.96441 1.22366 1.02641 1.00464 0.91207 1.23387 0.90099 0.91740 1.01074 1.67812 1.12379 1.20229 1.19718 1.22854 0.99779 0.96350 0.87346 1.22422 0.97083 1.02438 0.90497 1.98532 1.82322 1.97067 1.22940 0.91327 0.92277 0.91989 0.96520 0.96997 0.93737 0.93666 0.92247 0.92348 0.91311 0.90884 0.81160 0.78733 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.66 8.40 71.98 0.60 -4.05 16 2 C 0.10 3.56 2.26 44.91 0.10 3.66 16 3 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 4 C -0.01 -0.30 3.51 29.85 0.10 -0.20 16 5 C -0.45 -24.51 8.90 25.60 0.23 -24.28 16 6 H 0.04 2.54 7.95 -2.91 -0.02 2.52 16 7 C 0.01 0.71 5.47 84.65 0.46 1.18 16 8 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 9 Si 0.91 44.50 27.56 68.60 1.89 46.40 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.25 -11.12 6.41 99.48 0.64 -10.48 16 13 N -0.53 -17.84 4.32 -901.63 -3.89 -21.74 16 14 C 0.03 0.79 8.85 127.69 1.13 1.92 16 15 C 0.09 2.83 3.43 85.55 0.29 3.12 16 16 C -0.03 -0.98 4.61 -19.64 -0.09 -1.07 16 17 C -0.15 -3.05 9.04 22.36 0.20 -2.84 16 18 C 0.09 1.93 11.18 84.67 0.95 2.88 16 19 N -0.49 -13.32 10.36 -195.74 -2.03 -15.34 16 20 C 0.09 2.81 10.99 84.72 0.93 3.74 16 21 C -0.09 -3.16 6.34 22.42 0.14 -3.02 16 22 Cl -0.04 -1.56 27.24 -2.72 -0.07 -1.64 16 23 H 0.07 1.50 7.04 -2.38 -0.02 1.48 16 24 H 0.06 1.49 6.54 -2.39 -0.02 1.48 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.02 0.74 6.88 -2.39 -0.02 0.72 16 27 H 0.01 0.53 6.02 -2.38 -0.01 0.51 16 28 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.04 0.94 7.10 -2.38 -0.02 0.93 16 30 H 0.06 1.64 7.89 -2.38 -0.02 1.62 16 31 H 0.06 1.54 7.02 -2.39 -0.02 1.53 16 32 H 0.07 1.63 6.67 -2.39 -0.02 1.61 16 33 H 0.07 2.58 5.52 -2.39 -0.01 2.56 16 34 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -67.43 304.16 2.26 -65.17 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.00 Total: 5.40 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.06 Total: -18.97 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.62 Total: -96.36 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.89 Total: 46.40 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.64 kcal Total: -67.43 2.26 -65.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704411204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.528 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds