Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46682 * 2 1 4 4 N 1.46900 * 109.47071 * 119.99555 * 2 1 3 5 5 C 1.46896 * 110.99921 * 166.25402 * 4 2 1 6 6 C 1.50706 * 109.47297 * 293.95889 * 5 4 2 7 7 H 1.07997 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00012 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99833 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99995 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47461 * 89.99911 * 10 8 6 12 12 H 1.48505 * 109.47033 * 209.99965 * 10 8 6 13 13 H 1.48504 * 109.47075 * 329.99863 * 10 8 6 14 14 C 1.46897 * 111.00040 * 290.21024 * 4 2 1 15 15 C 1.50706 * 109.46863 * 163.90451 * 14 4 2 16 16 C 1.38237 * 120.41187 * 276.05324 * 15 14 4 17 17 N 1.31846 * 120.79580 * 179.97438 * 16 15 14 18 18 C 1.31872 * 121.73646 * 359.97438 * 17 16 15 19 19 C 1.38307 * 120.74765 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 120.43393 * 180.02562 * 19 18 17 21 21 C 1.38601 * 120.41382 * 96.00764 * 15 14 4 22 22 H 1.08996 * 109.47519 * 299.25978 * 1 2 3 23 23 H 1.09000 * 109.47131 * 59.26110 * 1 2 3 24 24 H 1.09005 * 109.46890 * 179.25879 * 1 2 3 25 25 H 1.09001 * 109.47228 * 240.00228 * 2 1 3 26 26 H 1.09003 * 109.46924 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47071 * 299.99302 * 3 2 1 28 28 H 1.08998 * 109.47598 * 60.00057 * 3 2 1 29 29 H 1.08996 * 109.47119 * 53.95417 * 5 4 2 30 30 H 1.08995 * 109.47336 * 173.95811 * 5 4 2 31 31 H 0.96998 * 120.00398 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47208 * 43.90447 * 14 4 2 33 33 H 1.08993 * 109.47388 * 283.89983 * 14 4 2 34 34 H 1.08011 * 119.60061 * 359.97438 * 16 15 14 35 35 H 1.08005 * 119.62593 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.79486 * 0.04279 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4511 -1.0008 1.0819 6 6 3.6595 -2.0051 -0.0222 7 1 2.8133 -2.3775 -0.5804 8 6 4.9307 -2.4487 -0.3198 9 7 5.1125 -3.3255 -1.2829 10 14 6.3944 -1.8052 0.6461 11 1 6.6335 -2.6786 1.8230 12 1 7.5989 -1.8042 -0.2225 13 1 6.1143 -0.4211 1.1057 14 6 1.7485 0.0951 2.4095 15 6 1.8914 -0.7853 3.6243 16 6 0.8381 -1.5769 4.0427 17 7 0.9550 -2.3503 5.1040 18 6 2.0708 -2.4020 5.8051 19 6 3.1673 -1.6392 5.4465 20 17 4.6322 -1.7141 6.3749 21 6 3.0808 -0.8121 4.3354 22 1 -0.3634 0.5023 0.8965 23 1 -0.3633 0.5253 -0.8833 24 1 -0.3633 -1.0276 -0.0133 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 4.0015 -0.0886 0.8518 30 1 3.8120 -1.4153 2.0230 31 1 6.0067 -3.6378 -1.4920 32 1 0.7340 0.4914 2.3653 33 1 2.4583 0.9198 2.4730 34 1 -0.0918 -1.5616 3.4934 35 1 2.1289 -3.0474 6.6692 36 1 3.9203 -0.2044 4.0318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705875469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = 29.256844 kcal Electronic energy + Delta-G solvation = -18586.120635 eV Core-core repulsion = 15710.135786 eV Total energy + Delta-G solvation = -2875.984849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22777 -37.92108 -36.57326 -33.17752 -32.76632 -31.45502 -30.51788 -27.86211 -26.76554 -25.12056 -23.59068 -22.08503 -21.74403 -18.87432 -17.07381 -16.83167 -16.52820 -16.01113 -15.05112 -14.76776 -14.28372 -13.97717 -13.47932 -13.21710 -13.09491 -12.93471 -12.66769 -12.45579 -11.97380 -11.86604 -11.75800 -11.56887 -11.22886 -11.01422 -10.79525 -10.62775 -10.44288 -10.15191 -9.94445 -9.51287 -9.46871 -9.26160 -8.72970 -8.59953 -7.47173 -6.08933 -4.05959 1.04736 1.25644 2.06484 3.24864 3.31382 3.33124 3.75241 4.37835 4.50148 4.66865 4.82546 4.93113 5.06116 5.14839 5.24120 5.41850 5.52302 5.66115 5.75046 5.79799 5.86706 5.94874 5.99153 6.11539 6.18577 6.29835 6.39132 6.58082 6.61380 6.70498 6.89825 6.97251 7.54639 7.82159 7.93282 7.97287 8.60068 8.99631 9.52794 11.04141 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.008288 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.726892 B = 3377.678544 C = 4782.046911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 C -0.182 4.182 4 N -0.515 5.515 5 C 0.159 3.841 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.867 3.133 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.088 3.912 15 C -0.096 4.096 16 C 0.122 3.878 17 N -0.472 5.472 18 C 0.104 3.896 19 C -0.088 4.088 20 Cl -0.065 7.065 21 C -0.060 4.060 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.047 0.953 29 H -0.008 1.008 30 H 0.023 0.977 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 8.033 11.224 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 C -0.241 4.241 4 N -0.238 5.238 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.695 3.305 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.193 1.193 14 C -0.041 4.041 15 C -0.099 4.099 16 C -0.035 4.035 17 N -0.180 5.180 18 C -0.054 4.054 19 C -0.117 4.117 20 Cl -0.036 7.036 21 C -0.087 4.087 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.010 0.990 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.936 6.955 11.493 15.119 hybrid contribution 2.430 1.454 0.178 2.838 sum -4.506 8.409 11.671 15.074 Atomic orbital electron populations 1.21854 0.95660 1.01971 1.00328 1.21670 0.94171 0.91860 0.95195 1.22466 1.02023 0.98614 1.01001 1.62185 1.20153 1.41941 0.99533 1.20244 0.83140 0.95619 0.97744 1.20991 0.94352 1.23180 1.16087 0.90062 1.24866 0.98525 0.94760 0.94946 1.69878 1.22329 1.31185 1.30328 0.86976 0.83025 0.79954 0.80577 1.19995 1.21120 1.19282 1.21034 1.01466 0.92973 0.88611 1.20903 0.93402 0.98826 0.96775 1.22719 0.98898 0.90181 0.91693 1.67821 1.24369 1.19029 1.06771 1.22660 0.87213 0.96537 0.99033 1.22039 0.90004 1.02635 0.97001 1.98365 1.35173 1.97671 1.72416 1.21490 0.98100 0.96834 0.92285 0.93548 0.93032 0.91993 0.88028 0.92360 0.92781 0.93378 0.99045 0.95888 0.92644 0.89815 0.94162 0.82051 0.82285 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.24 37.16 0.34 -1.61 16 2 C 0.08 1.37 2.76 -67.71 -0.19 1.18 16 3 C -0.18 -2.77 8.44 37.16 0.31 -2.45 16 4 N -0.51 -9.77 4.36 -229.52 -1.00 -10.77 16 5 C 0.16 3.64 3.53 -4.98 -0.02 3.62 16 6 C -0.51 -13.99 8.87 -34.44 -0.31 -14.29 16 7 H 0.08 2.44 7.47 -52.49 -0.39 2.05 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 10 Si 0.87 21.31 27.47 -169.99 -4.67 16.65 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.09 1.34 3.73 -4.97 -0.02 1.32 16 15 C -0.10 -1.49 4.93 -104.49 -0.51 -2.01 16 16 C 0.12 1.82 10.88 -17.55 -0.19 1.63 16 17 N -0.47 -7.23 10.36 -13.22 -0.14 -7.36 16 18 C 0.10 1.46 10.99 -17.51 -0.19 1.27 16 19 C -0.09 -1.29 6.34 -39.35 -0.25 -1.54 16 20 Cl -0.06 -0.87 28.99 -51.86 -1.50 -2.37 16 21 C -0.06 -0.94 8.29 -39.25 -0.33 -1.26 16 22 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 2.08 6.60 -51.93 -0.34 1.74 16 26 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.64 6.64 -51.93 -0.34 0.30 16 29 H -0.01 -0.19 5.66 -51.93 -0.29 -0.48 16 30 H 0.02 0.54 5.63 -51.93 -0.29 0.25 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.08 1.08 6.10 -51.93 -0.32 0.77 16 33 H 0.04 0.61 7.08 -51.93 -0.37 0.24 16 34 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -29.96 304.60 -8.13 -38.08 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.74 Total: -0.12 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.44 Total: -12.22 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.36 Total: -44.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.96 -8.13 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705875469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.338 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds