Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46682 * 2 1 4 4 N 1.46900 * 109.47071 * 119.99555 * 2 1 3 5 5 C 1.46896 * 110.99921 * 166.25402 * 4 2 1 6 6 C 1.50706 * 109.47297 * 293.95889 * 5 4 2 7 7 H 1.07997 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00012 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99833 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99995 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47461 * 89.99911 * 10 8 6 12 12 H 1.48505 * 109.47033 * 209.99965 * 10 8 6 13 13 H 1.48504 * 109.47075 * 329.99863 * 10 8 6 14 14 C 1.46897 * 111.00040 * 290.21024 * 4 2 1 15 15 C 1.50706 * 109.46863 * 163.90451 * 14 4 2 16 16 C 1.38237 * 120.41187 * 276.05324 * 15 14 4 17 17 N 1.31846 * 120.79580 * 179.97438 * 16 15 14 18 18 C 1.31872 * 121.73646 * 359.97438 * 17 16 15 19 19 C 1.38307 * 120.74765 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 120.43393 * 180.02562 * 19 18 17 21 21 C 1.38601 * 120.41382 * 96.00764 * 15 14 4 22 22 H 1.08996 * 109.47519 * 299.25978 * 1 2 3 23 23 H 1.09000 * 109.47131 * 59.26110 * 1 2 3 24 24 H 1.09005 * 109.46890 * 179.25879 * 1 2 3 25 25 H 1.09001 * 109.47228 * 240.00228 * 2 1 3 26 26 H 1.09003 * 109.46924 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47071 * 299.99302 * 3 2 1 28 28 H 1.08998 * 109.47598 * 60.00057 * 3 2 1 29 29 H 1.08996 * 109.47119 * 53.95417 * 5 4 2 30 30 H 1.08995 * 109.47336 * 173.95811 * 5 4 2 31 31 H 0.96998 * 120.00398 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47208 * 43.90447 * 14 4 2 33 33 H 1.08993 * 109.47388 * 283.89983 * 14 4 2 34 34 H 1.08011 * 119.60061 * 359.97438 * 16 15 14 35 35 H 1.08005 * 119.62593 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.79486 * 0.04279 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4511 -1.0008 1.0819 6 6 3.6595 -2.0051 -0.0222 7 1 2.8133 -2.3775 -0.5804 8 6 4.9307 -2.4487 -0.3198 9 7 5.1125 -3.3255 -1.2829 10 14 6.3944 -1.8052 0.6461 11 1 6.6335 -2.6786 1.8230 12 1 7.5989 -1.8042 -0.2225 13 1 6.1143 -0.4211 1.1057 14 6 1.7485 0.0951 2.4095 15 6 1.8914 -0.7853 3.6243 16 6 0.8381 -1.5769 4.0427 17 7 0.9550 -2.3503 5.1040 18 6 2.0708 -2.4020 5.8051 19 6 3.1673 -1.6392 5.4465 20 17 4.6322 -1.7141 6.3749 21 6 3.0808 -0.8121 4.3354 22 1 -0.3634 0.5023 0.8965 23 1 -0.3633 0.5253 -0.8833 24 1 -0.3633 -1.0276 -0.0133 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 4.0015 -0.0886 0.8518 30 1 3.8120 -1.4153 2.0230 31 1 6.0067 -3.6378 -1.4920 32 1 0.7340 0.4914 2.3653 33 1 2.4583 0.9198 2.4730 34 1 -0.0918 -1.5616 3.4934 35 1 2.1289 -3.0474 6.6692 36 1 3.9203 -0.2044 4.0318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705875469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = 10.074435 kcal Electronic energy + Delta-G solvation = -18586.952446 eV Core-core repulsion = 15710.135786 eV Total energy + Delta-G solvation = -2876.816660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37740 -39.31249 -37.65754 -34.85728 -34.35730 -32.61581 -32.07188 -29.47230 -27.95268 -26.57908 -24.75027 -23.68957 -23.12907 -20.31176 -18.85506 -18.19916 -17.75226 -17.26585 -16.41814 -16.34265 -15.93711 -15.17373 -14.91556 -14.73902 -14.43915 -14.21573 -14.10402 -13.84029 -13.40972 -13.08604 -12.94832 -12.85533 -12.68942 -12.46512 -12.29620 -12.01340 -11.98241 -11.85092 -11.52128 -11.32309 -10.78706 -10.65853 -10.60053 -9.85774 -8.95209 -8.29103 -6.30214 -0.07442 0.10072 0.96722 1.30057 1.30833 1.39630 2.30872 2.60140 3.05084 3.32348 3.45882 3.71874 3.74185 3.92810 4.01694 4.16389 4.32315 4.49650 4.55869 4.60430 4.63591 4.75385 4.86100 4.88787 4.95843 5.05214 5.06602 5.16765 5.26102 5.43371 5.50637 5.53883 5.60579 6.02193 6.43365 6.66791 6.76833 6.82151 7.32597 8.87604 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.008288 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.726892 B = 3377.678544 C = 4782.046911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 C -0.174 4.174 4 N -0.529 5.529 5 C 0.173 3.827 6 C -0.507 4.507 7 H 0.039 0.961 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.932 3.068 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.246 1.246 14 C 0.092 3.908 15 C -0.109 4.109 16 C 0.119 3.881 17 N -0.486 5.486 18 C 0.104 3.896 19 C -0.095 4.095 20 Cl -0.055 7.055 21 C -0.073 4.073 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.073 0.927 29 H -0.009 1.009 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 9.777 13.084 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.033 4.033 3 C -0.233 4.233 4 N -0.252 5.252 5 C 0.046 3.954 6 C -0.546 4.546 7 H 0.057 0.943 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.756 3.244 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.036 4.036 15 C -0.112 4.112 16 C -0.038 4.038 17 N -0.195 5.195 18 C -0.054 4.054 19 C -0.124 4.124 20 Cl -0.027 7.027 21 C -0.099 4.099 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.009 0.991 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.196 0.804 35 H 0.201 0.799 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.463 8.721 13.364 17.617 hybrid contribution 2.498 0.869 -0.412 2.677 sum -4.965 9.590 12.953 16.864 Atomic orbital electron populations 1.21769 0.92710 1.01834 1.02510 1.21658 0.96446 0.92440 0.92770 1.22378 1.00420 0.97369 1.03143 1.62052 1.17342 1.44187 1.01664 1.19907 0.86053 0.94010 0.95437 1.21271 0.93067 1.23564 1.16681 0.94270 1.25744 1.01793 0.95111 0.96032 1.70036 1.23091 1.33235 1.32531 0.85939 0.79061 0.80404 0.79043 1.19500 1.20831 1.16998 1.21108 1.03321 0.92579 0.86574 1.20969 0.93694 0.99473 0.97025 1.23030 0.99488 0.89677 0.91622 1.67877 1.24968 1.19427 1.07210 1.23076 0.86686 0.96288 0.99360 1.22125 0.90630 1.02614 0.97032 1.98366 1.34571 1.97632 1.72085 1.21652 0.98305 0.97203 0.92791 0.90919 0.91236 0.93332 0.92685 0.94730 0.91072 0.90785 0.99099 0.96054 0.92620 0.86837 0.93428 0.80358 0.79920 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.24 71.98 0.66 -2.68 16 2 C 0.08 2.53 2.76 44.92 0.12 2.66 16 3 C -0.17 -4.93 8.44 71.98 0.61 -4.32 16 4 N -0.53 -19.58 4.36 -880.08 -3.84 -23.42 16 5 C 0.17 7.88 3.53 85.56 0.30 8.19 16 6 C -0.51 -28.82 8.87 25.60 0.23 -28.59 16 7 H 0.04 2.49 7.47 -2.91 -0.02 2.47 16 8 C 0.01 0.60 5.47 84.66 0.46 1.07 16 9 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 10 Si 0.93 44.07 27.47 68.60 1.88 45.95 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 14 C 0.09 2.56 3.73 85.56 0.32 2.88 16 15 C -0.11 -3.14 4.93 -19.78 -0.10 -3.24 16 16 C 0.12 3.29 10.88 84.69 0.92 4.21 16 17 N -0.49 -13.96 10.36 -195.74 -2.03 -15.99 16 18 C 0.10 2.72 10.99 84.70 0.93 3.65 16 19 C -0.10 -2.62 6.34 22.42 0.14 -2.47 16 20 Cl -0.06 -1.37 28.99 -2.72 -0.08 -1.45 16 21 C -0.07 -2.12 8.29 22.49 0.19 -1.94 16 22 H 0.07 1.48 6.42 -2.39 -0.02 1.46 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.05 2.35 6.60 -2.39 -0.02 2.34 16 26 H 0.03 1.13 6.74 -2.39 -0.02 1.11 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.70 6.64 -2.39 -0.02 1.69 16 29 H -0.01 -0.39 5.66 -2.39 -0.01 -0.40 16 30 H 0.02 0.99 5.63 -2.39 -0.01 0.98 16 31 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.11 2.47 6.10 -2.39 -0.01 2.45 16 33 H 0.05 1.28 7.08 -2.39 -0.02 1.27 16 34 H 0.18 4.15 8.06 -2.90 -0.02 4.12 16 35 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -66.43 304.60 2.05 -64.37 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.02 Total: 10.28 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.79 Total: -20.59 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.57 Total: -98.56 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -66.43 2.05 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705875469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.449 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds