Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48500 * 109.46972 * 239.99527 * 3 2 1 5 5 H 1.48499 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47145 * 120.00122 * 3 2 1 7 7 C 1.39878 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 191.45577 * 7 2 1 9 9 C 1.41029 * 120.00111 * 11.45461 * 7 2 1 10 10 C 1.40667 * 120.26399 * 28.02727 * 9 7 2 11 11 C 1.38014 * 119.76594 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.83347 * 179.72144 * 11 10 9 13 13 C 1.47483 * 110.99361 * 134.52261 * 12 11 10 14 14 C 1.53515 * 87.93029 * 221.29175 * 13 12 11 15 15 C 1.52997 * 114.34309 * 139.68403 * 14 13 12 16 16 F 1.39901 * 109.47206 * 86.08107 * 15 14 13 17 17 F 1.39900 * 109.46949 * 206.07955 * 15 14 13 18 18 C 1.47479 * 111.00062 * 38.55190 * 12 11 10 19 19 C 1.39599 * 120.31911 * 359.97438 * 11 10 9 20 20 C 1.38053 * 120.55472 * 359.97438 * 19 11 10 21 21 C 1.38736 * 120.21771 * 359.97438 * 20 19 11 22 22 N 1.38866 * 120.16078 * 180.02562 * 21 20 19 23 23 H 0.96998 * 120.00125 * 4.98989 * 1 2 3 24 24 H 1.07991 * 120.11544 * 359.95157 * 10 9 7 25 25 H 1.08997 * 113.48253 * 336.05917 * 13 12 11 26 26 H 1.08998 * 113.47523 * 106.52983 * 13 12 11 27 27 H 1.08995 * 114.17222 * 272.38189 * 14 13 12 28 28 H 1.08997 * 109.47348 * 326.08008 * 15 14 13 29 29 H 1.08994 * 113.47279 * 253.46189 * 18 12 11 30 30 H 1.08998 * 113.47954 * 23.87238 * 18 12 11 31 31 H 1.08002 * 119.71913 * 179.97438 * 19 11 10 32 32 H 1.07997 * 119.89303 * 180.02562 * 20 19 11 33 33 H 0.97001 * 119.99973 * 186.00204 * 22 21 20 34 34 H 0.96997 * 120.00477 * 5.99294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2114 0.0005 8 1 3.0723 -1.2206 0.1863 9 6 1.3244 -2.4207 -0.2415 10 6 0.1592 -2.4307 -1.0294 11 6 -0.5018 -3.6201 -1.2601 12 7 -1.6637 -3.6307 -2.0384 13 6 -1.6344 -4.7342 -3.0165 14 6 -2.2239 -3.7617 -4.0477 15 6 -1.6270 -3.8918 -5.4504 16 9 -2.3125 -4.8846 -6.1587 17 9 -1.7477 -2.6713 -6.1235 18 6 -1.5482 -2.6961 -3.1734 19 6 -0.0192 -4.8116 -0.7159 20 6 1.1237 -4.8172 0.0584 21 6 1.8067 -3.6348 0.3039 22 7 2.9565 -3.6419 1.0826 23 1 -0.4850 0.8368 -0.0731 24 1 -0.2170 -1.5108 -1.4520 25 1 -0.6270 -5.0698 -3.2625 26 1 -2.3033 -5.5567 -2.7633 27 1 -3.3129 -3.7155 -4.0459 28 1 -0.5739 -4.1617 -5.3736 29 1 -2.1441 -1.7914 -3.0532 30 1 -0.5177 -2.4869 -3.4606 31 1 -0.5443 -5.7367 -0.9023 32 1 1.4879 -5.7452 0.4738 33 1 3.3831 -2.8052 1.3252 34 1 3.3330 -4.4834 1.3839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706449837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -44.982883 kcal Electronic energy + Delta-G solvation = -20276.919759 eV Core-core repulsion = 16845.918954 eV Total energy + Delta-G solvation = -3431.000805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.83580 -46.85246 -40.25279 -37.38818 -33.61958 -33.25888 -30.16020 -29.62869 -26.89752 -26.11274 -24.76625 -23.63307 -21.06435 -20.38322 -19.39326 -17.57326 -17.20428 -17.06716 -16.34775 -15.90423 -15.59356 -15.18879 -14.79047 -14.34596 -13.87968 -13.63087 -13.23248 -12.97395 -12.72309 -12.54186 -12.44128 -12.01093 -11.77210 -11.57287 -11.41794 -11.11423 -11.06385 -10.73430 -10.61709 -10.36908 -10.11667 -9.63023 -9.40092 -9.17113 -8.37564 -7.40134 -6.70442 -6.09890 -4.21315 2.77408 3.01377 3.08678 3.10032 3.18722 3.85113 3.96818 4.13556 4.22889 4.46872 4.67614 4.91558 5.21822 5.26570 5.34983 5.51873 5.65158 5.71876 5.84148 5.95144 6.15893 6.25711 6.36264 6.42637 6.96902 7.09464 7.16852 7.38774 7.55416 7.64110 7.89768 8.08545 8.23902 8.50311 8.76034 8.82035 9.04764 9.11913 10.29955 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.006113 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.979246 B = 4579.431550 C = 5673.021047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.148 4.148 11 C 0.023 3.977 12 N -0.418 5.418 13 C 0.020 3.980 14 C -0.181 4.181 15 C 0.273 3.727 16 F -0.209 7.209 17 F -0.205 7.205 18 C 0.026 3.974 19 C -0.200 4.200 20 C -0.171 4.171 21 C 0.113 3.887 22 N -0.885 5.885 23 H 0.278 0.722 24 H 0.128 0.872 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.391 0.609 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -4.873 -6.448 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.068 3.932 10 C -0.171 4.171 11 C -0.073 4.073 12 N -0.134 5.134 13 C -0.108 4.108 14 C -0.200 4.200 15 C 0.219 3.781 16 F -0.190 7.190 17 F -0.186 7.186 18 C -0.102 4.102 19 C -0.221 4.221 20 C -0.195 4.195 21 C 0.012 3.988 22 N -0.426 5.426 23 H 0.089 0.911 24 H 0.145 0.855 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.220 0.780 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.381 -4.613 -5.951 7.655 hybrid contribution 1.176 0.724 -0.165 1.391 sum -0.204 -3.889 -6.117 7.251 Atomic orbital electron populations 1.69811 1.07111 1.29064 1.37032 1.25749 0.94760 1.00737 0.92851 0.86447 0.80034 0.80995 0.79638 1.19179 1.20466 1.19278 1.19100 0.95383 0.90638 1.44406 0.91088 1.17117 0.93518 0.90689 0.91846 1.20963 0.98128 0.95384 1.02607 1.19001 0.91392 0.94928 1.01989 1.66451 1.33637 1.03452 1.09845 1.23759 1.00706 0.95738 0.90597 1.23990 1.03062 1.01777 0.91195 1.21990 0.97212 0.72463 0.86436 1.92961 1.82809 1.62230 1.81014 1.92976 1.97379 1.45854 1.82422 1.23670 1.00636 0.96619 0.89242 1.19843 0.99470 0.95026 1.07812 1.19837 0.98485 0.95151 1.06003 1.18017 0.90294 0.94315 0.96219 1.41910 1.30407 1.08939 1.61360 0.91083 0.85458 0.90435 0.89489 0.86217 0.87225 0.89137 0.90081 0.89237 0.89271 0.78012 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.63 10.82 55.54 0.60 -20.03 16 2 C 0.07 1.84 5.24 -17.33 -0.09 1.75 16 3 Si 0.90 18.50 29.58 -169.99 -5.03 13.47 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -11.73 8.41 -37.91 -0.32 -12.05 16 8 H 0.07 1.70 6.83 -52.49 -0.36 1.34 16 9 C 0.07 1.88 5.57 -106.66 -0.59 1.28 16 10 C -0.15 -3.69 7.39 -38.75 -0.29 -3.97 16 11 C 0.02 0.52 5.32 -83.77 -0.45 0.07 16 12 N -0.42 -8.05 6.52 -180.56 -1.18 -9.23 16 13 C 0.02 0.30 6.21 -7.54 -0.05 0.26 16 14 C -0.18 -2.49 4.19 -90.09 -0.38 -2.86 16 15 C 0.27 3.44 5.14 37.16 0.19 3.63 16 16 F -0.21 -2.77 17.34 2.25 0.04 -2.73 16 17 F -0.21 -2.91 17.21 2.25 0.04 -2.87 16 18 C 0.03 0.45 5.93 -7.54 -0.04 0.40 16 19 C -0.20 -4.31 8.97 -39.14 -0.35 -4.66 16 20 C -0.17 -3.70 9.87 -39.47 -0.39 -4.09 16 21 C 0.11 2.61 6.79 -83.23 -0.56 2.05 16 22 N -0.88 -17.10 8.97 32.75 0.29 -16.81 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 24 H 0.13 3.29 5.31 -52.49 -0.28 3.01 16 25 H 0.08 1.15 7.41 -51.93 -0.38 0.76 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.11 1.18 7.91 -51.93 -0.41 0.77 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 30 H 0.08 1.42 7.32 -51.93 -0.38 1.04 16 31 H 0.09 1.75 7.50 -52.49 -0.39 1.35 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.39 7.45 7.15 -40.82 -0.29 7.16 16 34 H 0.38 6.07 8.84 -40.82 -0.36 5.71 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -27.67 289.84 -7.87 -35.54 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -3.68 Total: 16.49 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.32 Total: -18.20 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.28 Total: -46.06 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.08 Total: -5.60 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.67 -7.87 -35.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706449837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.448 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds