Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48500 * 109.46972 * 239.99527 * 3 2 1 5 5 H 1.48499 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47145 * 120.00122 * 3 2 1 7 7 C 1.39878 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 191.45577 * 7 2 1 9 9 C 1.41029 * 120.00111 * 11.45461 * 7 2 1 10 10 C 1.40667 * 120.26399 * 28.02727 * 9 7 2 11 11 C 1.38014 * 119.76594 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.83347 * 179.72144 * 11 10 9 13 13 C 1.47483 * 110.99361 * 134.52261 * 12 11 10 14 14 C 1.53515 * 87.93029 * 221.29175 * 13 12 11 15 15 C 1.52997 * 114.34309 * 139.68403 * 14 13 12 16 16 F 1.39901 * 109.47206 * 86.08107 * 15 14 13 17 17 F 1.39900 * 109.46949 * 206.07955 * 15 14 13 18 18 C 1.47479 * 111.00062 * 38.55190 * 12 11 10 19 19 C 1.39599 * 120.31911 * 359.97438 * 11 10 9 20 20 C 1.38053 * 120.55472 * 359.97438 * 19 11 10 21 21 C 1.38736 * 120.21771 * 359.97438 * 20 19 11 22 22 N 1.38866 * 120.16078 * 180.02562 * 21 20 19 23 23 H 0.96998 * 120.00125 * 4.98989 * 1 2 3 24 24 H 1.07991 * 120.11544 * 359.95157 * 10 9 7 25 25 H 1.08997 * 113.48253 * 336.05917 * 13 12 11 26 26 H 1.08998 * 113.47523 * 106.52983 * 13 12 11 27 27 H 1.08995 * 114.17222 * 272.38189 * 14 13 12 28 28 H 1.08997 * 109.47348 * 326.08008 * 15 14 13 29 29 H 1.08994 * 113.47279 * 253.46189 * 18 12 11 30 30 H 1.08998 * 113.47954 * 23.87238 * 18 12 11 31 31 H 1.08002 * 119.71913 * 179.97438 * 19 11 10 32 32 H 1.07997 * 119.89303 * 180.02562 * 20 19 11 33 33 H 0.97001 * 119.99973 * 186.00204 * 22 21 20 34 34 H 0.96997 * 120.00477 * 5.99294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2114 0.0005 8 1 3.0723 -1.2206 0.1863 9 6 1.3244 -2.4207 -0.2415 10 6 0.1592 -2.4307 -1.0294 11 6 -0.5018 -3.6201 -1.2601 12 7 -1.6637 -3.6307 -2.0384 13 6 -1.6344 -4.7342 -3.0165 14 6 -2.2239 -3.7617 -4.0477 15 6 -1.6270 -3.8918 -5.4504 16 9 -2.3125 -4.8846 -6.1587 17 9 -1.7477 -2.6713 -6.1235 18 6 -1.5482 -2.6961 -3.1734 19 6 -0.0192 -4.8116 -0.7159 20 6 1.1237 -4.8172 0.0584 21 6 1.8067 -3.6348 0.3039 22 7 2.9565 -3.6419 1.0826 23 1 -0.4850 0.8368 -0.0731 24 1 -0.2170 -1.5108 -1.4520 25 1 -0.6270 -5.0698 -3.2625 26 1 -2.3033 -5.5567 -2.7633 27 1 -3.3129 -3.7155 -4.0459 28 1 -0.5739 -4.1617 -5.3736 29 1 -2.1441 -1.7914 -3.0532 30 1 -0.5177 -2.4869 -3.4606 31 1 -0.5443 -5.7367 -0.9023 32 1 1.4879 -5.7452 0.4738 33 1 3.3831 -2.8052 1.3252 34 1 3.3330 -4.4834 1.3839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706449837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = -62.724465 kcal Electronic energy + Delta-G solvation = -20277.689091 eV Core-core repulsion = 16845.918954 eV Total energy + Delta-G solvation = -3431.770138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89562 -47.91646 -41.68050 -39.05533 -35.42134 -34.84317 -31.56692 -31.42287 -28.42808 -27.56574 -26.36735 -25.01568 -22.80609 -21.74987 -20.88224 -19.16163 -18.34378 -18.17959 -17.89338 -17.40505 -17.21421 -16.55621 -16.45990 -15.73252 -15.25787 -14.83051 -14.61698 -14.30721 -14.28467 -14.06075 -13.81239 -13.50796 -13.35508 -13.13189 -12.99519 -12.75854 -12.46963 -12.19618 -12.14833 -11.78136 -11.62633 -11.24209 -11.05531 -10.96955 -9.91057 -9.22111 -8.51728 -7.78272 -6.07716 1.04519 1.26451 1.40760 1.50004 1.53940 2.25985 2.71264 2.83561 2.93284 3.11996 3.38715 3.65528 3.76132 3.87069 4.15004 4.18529 4.26003 4.36998 4.49790 4.65075 4.71634 4.75286 4.89283 5.03523 5.19427 5.34679 5.42444 5.67043 5.84953 5.96536 6.13468 6.34287 6.45157 6.79946 6.96222 7.03512 7.32053 7.56165 8.49891 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.006113 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.979246 B = 4579.431550 C = 5673.021047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.032 3.968 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.075 0.925 9 C 0.036 3.964 10 C -0.169 4.169 11 C 0.020 3.980 12 N -0.440 5.440 13 C 0.025 3.975 14 C -0.158 4.158 15 C 0.278 3.722 16 F -0.209 7.209 17 F -0.214 7.214 18 C 0.023 3.977 19 C -0.197 4.197 20 C -0.177 4.177 21 C 0.103 3.897 22 N -0.874 5.874 23 H 0.279 0.721 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.392 0.608 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -6.139 -6.905 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.521 4.521 8 H 0.093 0.907 9 C 0.030 3.970 10 C -0.192 4.192 11 C -0.076 4.076 12 N -0.156 5.156 13 C -0.103 4.103 14 C -0.177 4.177 15 C 0.224 3.776 16 F -0.190 7.190 17 F -0.196 7.196 18 C -0.105 4.105 19 C -0.219 4.219 20 C -0.201 4.201 21 C 0.000 4.000 22 N -0.417 5.417 23 H 0.090 0.910 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.221 0.779 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.047 -5.909 -6.404 8.776 hybrid contribution 1.017 0.982 -0.031 1.414 sum -0.030 -4.927 -6.435 8.104 Atomic orbital electron populations 1.69912 1.08541 1.29791 1.38626 1.26528 0.95411 1.03810 0.92212 0.85399 0.78635 0.76781 0.79731 1.18846 1.20248 1.18561 1.19347 0.95673 0.91467 1.45599 0.90730 1.17497 0.94489 0.91939 0.93053 1.20924 0.98956 0.95718 1.03582 1.19168 0.91887 0.94385 1.02199 1.66373 1.32112 1.05963 1.11199 1.23826 1.01671 0.95354 0.89416 1.23821 1.03332 0.99137 0.91457 1.22056 0.98193 0.72037 0.85352 1.92964 1.82998 1.62139 1.80916 1.92963 1.97462 1.46613 1.82538 1.23605 1.00354 0.96967 0.89556 1.20201 0.99310 0.95620 1.06727 1.20196 0.98352 0.95801 1.05727 1.18203 0.91297 0.94107 0.96434 1.41807 1.29377 1.09975 1.60517 0.91035 0.87496 0.89760 0.87602 0.85285 0.84902 0.90224 0.91104 0.86735 0.86419 0.77933 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.74 10.82 21.82 0.24 -44.50 16 2 C 0.03 1.62 5.24 85.23 0.45 2.06 16 3 Si 0.97 38.58 29.58 68.60 2.03 40.61 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.49 -25.29 8.41 23.35 0.20 -25.09 16 8 H 0.07 3.63 6.83 -2.91 -0.02 3.61 16 9 C 0.04 1.84 5.57 -21.18 -0.12 1.73 16 10 C -0.17 -8.64 7.39 22.81 0.17 -8.47 16 11 C 0.02 0.91 5.32 38.14 0.20 1.11 16 12 N -0.44 -16.65 6.52 -725.16 -4.73 -21.38 16 13 C 0.02 0.69 6.21 83.58 0.52 1.21 16 14 C -0.16 -4.06 4.19 -10.45 -0.04 -4.10 16 15 C 0.28 6.38 5.14 71.98 0.37 6.75 16 16 F -0.21 -4.99 17.34 44.97 0.78 -4.21 16 17 F -0.21 -5.78 17.21 44.97 0.77 -5.00 16 18 C 0.02 0.79 5.93 83.58 0.50 1.29 16 19 C -0.20 -8.14 8.97 22.55 0.20 -7.94 16 20 C -0.18 -7.34 9.87 22.34 0.22 -7.12 16 21 C 0.10 4.67 6.79 38.97 0.26 4.94 16 22 N -0.87 -32.87 8.97 -50.31 -0.45 -33.32 16 23 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 24 H 0.11 5.81 5.31 -2.92 -0.02 5.80 16 25 H 0.08 2.27 7.41 -2.39 -0.02 2.25 16 26 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.13 2.50 7.91 -2.39 -0.02 2.49 16 29 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.07 2.54 7.32 -2.39 -0.02 2.52 16 31 H 0.11 4.10 7.50 -2.91 -0.02 4.08 16 32 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.39 14.73 7.15 -92.71 -0.66 14.07 16 34 H 0.39 11.93 8.84 -92.71 -0.82 11.11 16 Total: -1.00 -59.99 289.84 1.24 -58.75 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.32 Total: 42.68 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 2.93 Total: -33.64 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.94 Total: -99.20 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 1.55 Total: -9.21 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -59.99 1.24 -58.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706449837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.971 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds