Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 H 1.09000 * 109.47530 * 175.87522 * 3 2 1 5 5 C 1.50701 * 109.47042 * 55.86894 * 3 2 1 6 6 H 1.07993 * 120.00178 * 240.00025 * 5 3 2 7 7 C 1.37876 * 119.99634 * 60.00550 * 5 3 2 8 8 N 1.31513 * 120.00528 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47366 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47489 * 119.99560 * 9 7 5 12 12 H 1.48504 * 109.47020 * 239.99705 * 9 7 5 13 13 N 1.46900 * 109.47096 * 295.87460 * 3 2 1 14 14 C 1.46901 * 111.00444 * 172.43977 * 13 3 2 15 15 C 1.46904 * 110.99877 * 296.39175 * 13 3 2 16 16 C 1.50693 * 109.47101 * 173.27058 * 15 13 3 17 17 C 1.38651 * 120.79960 * 101.73373 * 16 15 13 18 18 C 1.38186 * 119.18195 * 179.97438 * 17 16 15 19 19 N 1.31879 * 120.79346 * 359.97438 * 18 17 16 20 20 C 1.31844 * 121.73890 * 359.97438 * 19 18 17 21 21 C 1.38353 * 120.74478 * 359.75119 * 20 19 18 22 22 Cl 1.73595 * 120.43547 * 180.28693 * 21 20 19 23 23 H 1.09001 * 109.47007 * 54.24385 * 1 2 3 24 24 H 1.08999 * 109.47000 * 294.24839 * 1 2 3 25 25 H 1.09001 * 109.47304 * 174.24519 * 1 2 3 26 26 H 1.09005 * 109.47365 * 120.00402 * 2 1 3 27 27 H 1.09003 * 109.47305 * 239.99671 * 2 1 3 28 28 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47392 * 59.99313 * 14 13 3 30 30 H 1.08995 * 109.47690 * 179.97438 * 14 13 3 31 31 H 1.09007 * 109.46538 * 299.99997 * 14 13 3 32 32 H 1.09005 * 109.46958 * 293.26624 * 15 13 3 33 33 H 1.08998 * 109.47383 * 53.26583 * 15 13 3 34 34 H 1.08001 * 120.41063 * 359.94864 * 17 16 15 35 35 H 1.08005 * 119.60705 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.62843 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1276 1.4433 0.0739 5 6 1.4559 2.1818 1.1761 6 1 0.8440 3.0567 1.0141 7 6 1.7029 1.7412 2.4590 8 7 2.4478 0.6755 2.6564 9 14 0.9783 2.6572 3.9169 10 1 0.1837 3.8133 3.4298 11 1 0.0998 1.7425 4.6893 12 1 2.0759 3.1444 4.7905 13 7 1.6335 2.1056 -1.2461 14 6 1.9485 3.5399 -1.2063 15 6 2.2547 1.4624 -2.4117 16 6 1.6897 2.0587 -3.6750 17 6 2.4065 2.9997 -4.3983 18 6 1.8567 3.5243 -5.5524 19 7 0.6656 3.1398 -5.9680 20 6 -0.0447 2.2469 -5.3074 21 6 0.4430 1.6736 -4.1465 22 17 -0.4959 0.4932 -3.2870 23 1 -0.3633 0.6005 -0.8340 24 1 -0.3633 0.4221 0.9370 25 1 -0.3634 -1.0225 -0.1030 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.6212 0.3653 3.5589 29 1 3.0222 3.6725 -1.0740 30 1 1.6376 4.0063 -2.1411 31 1 1.4197 4.0049 -0.3743 32 1 3.3324 1.6236 -2.3842 33 1 2.0467 0.3926 -2.3902 34 1 3.3825 3.3190 -4.0636 35 1 2.4089 4.2580 -6.1209 36 1 -1.0163 1.9565 -5.6790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707726800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = 34.210836 kcal Electronic energy + Delta-G solvation = -18854.993156 eV Core-core repulsion = 15979.223129 eV Total energy + Delta-G solvation = -2875.770027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22583 -37.35765 -36.27655 -33.83199 -31.99642 -30.95090 -30.80157 -27.44680 -26.16415 -24.46277 -23.42572 -22.44374 -21.37964 -18.96529 -16.80127 -16.62126 -16.08602 -15.77067 -15.28777 -14.46792 -14.15818 -13.91502 -13.68467 -13.54452 -12.74339 -12.32443 -12.05923 -12.02472 -11.90510 -11.70247 -11.22477 -11.01658 -10.93961 -10.77807 -10.66135 -10.20818 -10.05855 -9.76539 -9.49365 -9.45119 -9.26800 -8.80636 -8.72276 -8.43821 -7.22811 -6.03056 -4.05918 1.01537 1.20925 2.34248 3.27651 3.36356 3.39985 3.71567 4.39081 4.43128 4.71976 4.73354 4.99578 5.14365 5.30781 5.35004 5.61156 5.68559 5.92015 6.06932 6.12640 6.25493 6.38720 6.51239 6.56074 6.66581 6.76538 6.82584 7.19987 7.30206 7.41797 7.63919 7.76464 7.82354 7.85805 8.09377 8.29161 8.53877 8.98642 9.57799 11.03818 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.005976 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.333602 B = 4684.046900 C = 5114.542768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.218 3.782 4 H -0.002 1.002 5 C -0.498 4.498 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.520 5.520 14 C 0.036 3.964 15 C 0.080 3.920 16 C -0.011 4.011 17 C -0.159 4.159 18 C 0.093 3.907 19 N -0.480 5.480 20 C 0.104 3.896 21 C -0.071 4.071 22 Cl -0.035 7.035 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 1.818 -13.070 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.245 5.245 14 C -0.113 4.113 15 C -0.048 4.048 16 C -0.021 4.021 17 C -0.180 4.180 18 C -0.063 4.063 19 N -0.189 5.189 20 C -0.054 4.054 21 C -0.101 4.101 22 Cl -0.005 7.005 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.105 0.895 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.009 1.909 -13.624 13.903 hybrid contribution 0.869 0.081 1.843 2.039 sum -1.140 1.989 -11.781 12.002 Atomic orbital electron populations 1.21554 0.97174 0.97185 1.02255 1.21502 0.95535 0.97800 0.99493 1.19306 0.93469 0.91477 0.84513 0.98447 1.21103 1.30977 1.11910 0.89636 0.91793 1.24879 0.95271 0.95077 0.98751 1.69893 1.38392 1.23554 1.21197 0.86538 0.78889 0.79877 0.82713 1.19780 1.21051 1.21230 1.62168 1.57702 1.02101 1.02516 1.22260 0.98149 0.90087 1.00775 1.21184 0.95658 1.00060 0.87873 1.20424 0.92124 0.93616 0.95898 1.22118 1.01745 0.97733 0.96392 1.22733 0.91706 0.97862 0.94043 1.67751 1.07130 1.12140 1.31909 1.22725 0.99572 0.92524 0.90562 1.22021 0.94481 0.97610 0.95981 1.98403 1.71321 1.55069 1.75757 0.92414 0.92869 0.97135 0.89484 0.96898 0.93080 0.96902 0.94203 0.90284 0.94557 0.88876 0.84396 0.82528 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.43 37.16 0.35 -2.38 16 2 C -0.11 -2.43 5.29 -26.73 -0.14 -2.57 16 3 C 0.22 5.18 1.77 -68.87 -0.12 5.06 16 4 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 5 C -0.50 -12.90 6.58 -34.44 -0.23 -13.13 16 6 H 0.06 1.68 6.14 -52.49 -0.32 1.36 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -24.62 11.36 55.43 0.63 -23.99 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.52 -10.46 3.96 -237.73 -0.94 -11.40 16 14 C 0.04 0.68 8.94 60.07 0.54 1.21 16 15 C 0.08 1.39 4.41 -4.98 -0.02 1.36 16 16 C -0.01 -0.17 4.41 -104.29 -0.46 -0.63 16 17 C -0.16 -2.02 8.87 -39.45 -0.35 -2.37 16 18 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 19 N -0.48 -6.49 10.36 -13.22 -0.14 -6.63 16 20 C 0.10 1.39 10.99 -17.50 -0.19 1.20 16 21 C -0.07 -1.05 6.34 -39.35 -0.25 -1.30 16 22 Cl -0.03 -0.53 25.64 -51.86 -1.33 -1.86 16 23 H 0.06 1.20 5.30 -51.93 -0.28 0.93 16 24 H 0.05 1.28 7.33 -51.93 -0.38 0.90 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 2.26 6.19 -51.93 -0.32 1.94 16 27 H 0.01 0.27 6.16 -51.93 -0.32 -0.05 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.67 6.41 -51.93 -0.33 0.34 16 31 H 0.08 1.62 6.05 -51.93 -0.31 1.31 16 32 H 0.04 0.61 8.03 -51.93 -0.42 0.20 16 33 H 0.09 1.67 5.40 -51.93 -0.28 1.39 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -27.73 299.62 -8.09 -35.82 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.64 Total: -1.24 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.17 Total: -11.11 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.45 Total: -42.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.33 Total: -1.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.73 -8.09 -35.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707726800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.026 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds