Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 H 1.09000 * 109.47530 * 175.87522 * 3 2 1 5 5 C 1.50701 * 109.47042 * 55.86894 * 3 2 1 6 6 H 1.07993 * 120.00178 * 240.00025 * 5 3 2 7 7 C 1.37876 * 119.99634 * 60.00550 * 5 3 2 8 8 N 1.31513 * 120.00528 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47366 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47489 * 119.99560 * 9 7 5 12 12 H 1.48504 * 109.47020 * 239.99705 * 9 7 5 13 13 N 1.46900 * 109.47096 * 295.87460 * 3 2 1 14 14 C 1.46901 * 111.00444 * 172.43977 * 13 3 2 15 15 C 1.46904 * 110.99877 * 296.39175 * 13 3 2 16 16 C 1.50693 * 109.47101 * 173.27058 * 15 13 3 17 17 C 1.38651 * 120.79960 * 101.73373 * 16 15 13 18 18 C 1.38186 * 119.18195 * 179.97438 * 17 16 15 19 19 N 1.31879 * 120.79346 * 359.97438 * 18 17 16 20 20 C 1.31844 * 121.73890 * 359.97438 * 19 18 17 21 21 C 1.38353 * 120.74478 * 359.75119 * 20 19 18 22 22 Cl 1.73595 * 120.43547 * 180.28693 * 21 20 19 23 23 H 1.09001 * 109.47007 * 54.24385 * 1 2 3 24 24 H 1.08999 * 109.47000 * 294.24839 * 1 2 3 25 25 H 1.09001 * 109.47304 * 174.24519 * 1 2 3 26 26 H 1.09005 * 109.47365 * 120.00402 * 2 1 3 27 27 H 1.09003 * 109.47305 * 239.99671 * 2 1 3 28 28 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47392 * 59.99313 * 14 13 3 30 30 H 1.08995 * 109.47690 * 179.97438 * 14 13 3 31 31 H 1.09007 * 109.46538 * 299.99997 * 14 13 3 32 32 H 1.09005 * 109.46958 * 293.26624 * 15 13 3 33 33 H 1.08998 * 109.47383 * 53.26583 * 15 13 3 34 34 H 1.08001 * 120.41063 * 359.94864 * 17 16 15 35 35 H 1.08005 * 119.60705 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.62843 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1276 1.4433 0.0739 5 6 1.4559 2.1818 1.1761 6 1 0.8440 3.0567 1.0141 7 6 1.7029 1.7412 2.4590 8 7 2.4478 0.6755 2.6564 9 14 0.9783 2.6572 3.9169 10 1 0.1837 3.8133 3.4298 11 1 0.0998 1.7425 4.6893 12 1 2.0759 3.1444 4.7905 13 7 1.6335 2.1056 -1.2461 14 6 1.9485 3.5399 -1.2063 15 6 2.2547 1.4624 -2.4117 16 6 1.6897 2.0587 -3.6750 17 6 2.4065 2.9997 -4.3983 18 6 1.8567 3.5243 -5.5524 19 7 0.6656 3.1398 -5.9680 20 6 -0.0447 2.2469 -5.3074 21 6 0.4430 1.6736 -4.1465 22 17 -0.4959 0.4932 -3.2870 23 1 -0.3633 0.6005 -0.8340 24 1 -0.3633 0.4221 0.9370 25 1 -0.3634 -1.0225 -0.1030 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.6212 0.3653 3.5589 29 1 3.0222 3.6725 -1.0740 30 1 1.6376 4.0063 -2.1411 31 1 1.4197 4.0049 -0.3743 32 1 3.3324 1.6236 -2.3842 33 1 2.0467 0.3926 -2.3902 34 1 3.3825 3.3190 -4.0636 35 1 2.4089 4.2580 -6.1209 36 1 -1.0163 1.9565 -5.6790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707726800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = 18.367558 kcal Electronic energy + Delta-G solvation = -18855.680173 eV Core-core repulsion = 15979.223129 eV Total energy + Delta-G solvation = -2876.457043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29602 -38.96728 -37.42371 -35.45519 -33.56323 -32.57524 -31.96037 -28.98656 -27.91201 -26.15006 -24.45854 -24.04157 -22.75252 -20.74826 -18.23542 -17.77789 -17.65019 -17.08644 -16.78071 -15.96907 -15.84296 -15.30378 -14.89690 -14.87962 -14.38448 -13.97970 -13.77139 -13.40164 -13.27739 -13.00855 -12.83394 -12.76630 -12.54216 -12.42913 -12.06958 -12.00178 -11.85239 -11.54823 -11.17255 -10.79158 -10.56925 -10.49645 -10.38442 -9.83309 -8.89229 -8.06826 -6.14997 0.00854 0.12458 1.22866 1.40165 1.44018 1.53438 2.43706 2.69324 3.22865 3.40163 3.52775 3.60441 3.82956 3.99915 4.29831 4.42875 4.52200 4.60770 4.68468 4.74607 4.79559 4.82782 4.92719 4.97112 5.15304 5.21407 5.35610 5.47648 5.55818 5.57644 5.75411 5.80953 5.93327 6.29817 6.40095 6.73084 6.86515 6.97529 7.52122 8.99267 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.005976 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.333602 B = 4684.046900 C = 5114.542768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C 0.226 3.774 4 H -0.038 1.038 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.523 5.523 14 C 0.042 3.958 15 C 0.085 3.915 16 C -0.028 4.028 17 C -0.156 4.156 18 C 0.101 3.899 19 N -0.490 5.490 20 C 0.105 3.895 21 C -0.083 4.083 22 Cl -0.048 7.048 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.012 0.988 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.194 0.806 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 2.995 -14.670 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.020 1.020 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.247 5.247 14 C -0.106 4.106 15 C -0.042 4.042 16 C -0.037 4.037 17 C -0.176 4.176 18 C -0.055 4.055 19 N -0.200 5.200 20 C -0.052 4.052 21 C -0.112 4.112 22 Cl -0.019 7.019 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.210 0.790 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.328 3.095 -15.241 15.726 hybrid contribution 1.010 -0.250 2.227 2.458 sum -1.318 2.844 -13.015 13.387 Atomic orbital electron populations 1.21427 0.96110 0.98226 1.01233 1.21348 0.96317 0.97289 0.98696 1.19047 0.91098 0.92031 0.85914 1.02015 1.21321 1.30444 1.11708 0.90593 0.92313 1.25542 0.95734 0.95789 1.01077 1.70019 1.39551 1.24748 1.21499 0.85667 0.78167 0.78854 0.79921 1.19269 1.21071 1.21010 1.62051 1.58081 1.02633 1.01970 1.22186 0.97843 0.89354 1.01208 1.21085 0.95822 0.99505 0.87827 1.20293 0.92857 0.95081 0.95487 1.22340 1.02273 0.96696 0.96279 1.23309 0.91121 0.97508 0.93572 1.67852 1.07867 1.12211 1.32046 1.23006 1.00273 0.92042 0.89876 1.22120 0.94496 0.97962 0.96662 1.98392 1.71628 1.55668 1.76181 0.91336 0.95402 0.95487 0.92557 0.95347 0.93224 0.96969 0.91793 0.92197 0.94224 0.89859 0.82490 0.78961 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 9.43 71.98 0.68 -4.26 16 2 C -0.10 -4.60 5.29 30.59 0.16 -4.44 16 3 C 0.23 10.90 1.77 44.17 0.08 10.98 16 4 H -0.04 -2.05 8.14 -2.39 -0.02 -2.07 16 5 C -0.50 -26.36 6.58 25.60 0.17 -26.19 16 6 H 0.06 3.10 6.14 -2.91 -0.02 3.08 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -51.79 11.36 21.45 0.24 -51.55 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.52 -20.81 3.96 -906.05 -3.59 -24.40 16 14 C 0.04 1.57 8.94 127.69 1.14 2.71 16 15 C 0.09 2.87 4.41 85.55 0.38 3.25 16 16 C -0.03 -0.79 4.41 -19.65 -0.09 -0.88 16 17 C -0.16 -3.47 8.87 22.36 0.20 -3.27 16 18 C 0.10 2.02 11.18 84.67 0.95 2.97 16 19 N -0.49 -11.69 10.36 -195.74 -2.03 -13.72 16 20 C 0.11 2.55 10.99 84.72 0.93 3.48 16 21 C -0.08 -2.30 6.34 22.42 0.14 -2.16 16 22 Cl -0.05 -1.41 25.64 -2.72 -0.07 -1.48 16 23 H 0.07 2.82 5.30 -2.39 -0.01 2.81 16 24 H 0.03 1.32 7.33 -2.39 -0.02 1.31 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 3.00 6.19 -2.38 -0.01 2.99 16 27 H 0.03 1.21 6.16 -2.39 -0.01 1.20 16 28 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 2.03 6.41 -2.39 -0.02 2.02 16 31 H 0.06 2.43 6.05 -2.38 -0.01 2.42 16 32 H 0.04 1.30 8.03 -2.38 -0.02 1.28 16 33 H 0.08 2.95 5.40 -2.39 -0.01 2.93 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -59.36 299.62 2.85 -56.51 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.08 Total: 5.82 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 5.19 Total: -16.43 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -5.37 Total: -89.67 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.48 kcal Total: -59.36 2.85 -56.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707726800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.880 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds