Wall clock time and date at job start Mon Mar 30 2020 07:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47062 * 2 1 4 4 O 1.42897 * 109.47523 * 239.99645 * 2 1 3 5 5 C 1.50707 * 109.47051 * 119.99586 * 2 1 3 6 6 C 1.38244 * 119.95618 * 94.99827 * 5 2 1 7 7 C 1.38138 * 120.08009 * 179.97438 * 6 5 2 8 8 C 1.38771 * 119.99323 * 0.03014 * 7 6 5 9 9 O 1.35895 * 120.03946 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00272 * 354.56106 * 9 8 7 11 11 H 1.08993 * 109.47425 * 324.92997 * 10 9 8 12 12 C 1.53002 * 109.46603 * 84.92781 * 10 9 8 13 13 C 1.53001 * 109.47235 * 204.92667 * 10 9 8 14 14 C 1.50696 * 109.47039 * 64.99971 * 13 10 9 15 15 H 1.08003 * 120.00464 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99694 * 179.72020 * 14 13 10 17 17 N 1.31514 * 120.00637 * 0.28452 * 16 14 13 18 18 Si 1.86810 * 119.99858 * 180.27618 * 16 14 13 19 19 H 1.48498 * 109.46783 * 90.00596 * 18 16 14 20 20 H 1.48497 * 109.47301 * 210.00484 * 18 16 14 21 21 H 1.48501 * 109.47076 * 330.00633 * 18 16 14 22 22 C 1.38667 * 119.91624 * 0.24787 * 8 7 6 23 23 C 1.38388 * 119.91598 * 359.49563 * 22 8 7 24 24 F 1.35111 * 119.99673 * 180.27472 * 23 22 8 25 25 H 1.08999 * 109.47407 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.47133 * 60.00450 * 1 2 3 27 27 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 28 28 H 0.96699 * 113.99571 * 59.99888 * 4 2 1 29 29 H 1.08001 * 119.96247 * 0.02562 * 6 5 2 30 30 H 1.07999 * 120.00281 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47069 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47406 * 299.99858 * 12 10 9 33 33 H 1.09000 * 109.47193 * 60.00371 * 12 10 9 34 34 H 1.09007 * 109.46865 * 305.00249 * 13 10 9 35 35 H 1.09003 * 109.47120 * 185.00488 * 13 10 9 36 36 H 0.96996 * 120.00567 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.04154 * 179.74819 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3608 -2.0517 1.1676 7 6 2.8220 -2.7052 2.2938 8 6 2.9554 -2.0153 3.4904 9 8 3.4085 -2.6574 4.5991 10 6 3.6152 -4.0674 4.4933 11 1 2.8583 -4.4973 3.8373 12 6 5.0052 -4.3369 3.9135 13 6 3.5089 -4.7039 5.8805 14 6 2.1033 -4.5448 6.3999 15 1 1.3598 -4.0405 5.8003 16 6 1.7646 -5.0486 7.6378 17 7 2.6697 -5.6631 8.3678 18 14 0.0201 -4.8582 8.2784 19 1 -0.7925 -6.0272 7.8561 20 1 0.0429 -4.7809 9.7611 21 1 -0.5767 -3.6153 7.7270 22 6 2.6204 -0.6712 3.5548 23 6 2.1638 -0.0187 2.4230 24 9 1.8422 1.2922 2.4826 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -0.2702 -1.9978 29 1 2.2576 -2.5892 0.2365 30 1 3.0779 -3.7533 2.2433 31 1 5.1627 -5.4125 3.8324 32 1 5.0809 -3.8834 2.9252 33 1 5.7621 -3.9070 4.5696 34 1 4.2052 -4.2123 6.5601 35 1 3.7538 -5.7640 5.8136 36 1 2.4315 -6.0172 9.2389 37 1 2.7196 -0.1333 4.4860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709975247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:51 Heat of formation + Delta-G solvation = -124.425576 kcal Electronic energy + Delta-G solvation = -20300.980257 eV Core-core repulsion = 16957.702113 eV Total energy + Delta-G solvation = -3343.278145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.86977 -39.93662 -38.20444 -36.45041 -33.55110 -32.00530 -31.39115 -30.33123 -28.51614 -27.48420 -24.00952 -23.19244 -22.93476 -21.26529 -19.95494 -18.18480 -17.44635 -16.45990 -16.06642 -15.97947 -15.80190 -15.60954 -14.70437 -14.55003 -14.40247 -14.01394 -13.87001 -13.07902 -12.91838 -12.71459 -12.65678 -12.18263 -12.02015 -11.86444 -11.66565 -11.41894 -11.16146 -10.99276 -10.83010 -10.74966 -10.48658 -10.22701 -10.03793 -9.42347 -9.14876 -8.70042 -8.41607 -7.83761 -6.04525 -4.06296 1.30097 1.48255 3.30972 3.37524 3.42378 3.61592 3.74991 4.00257 4.43992 4.48299 4.72173 4.90547 4.99935 5.08264 5.24252 5.32526 5.49112 5.50351 5.53513 5.58629 5.69414 5.72857 5.91788 5.97223 6.13400 6.17770 6.21223 6.45183 6.47057 6.59527 6.71844 6.90015 7.43262 7.45232 7.53694 7.91650 8.02683 8.31912 8.97232 9.57480 11.06820 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.004668 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.526141 B = 5997.338808 C = 6530.394377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.154 3.846 3 H 0.062 0.938 4 O -0.562 6.562 5 C -0.177 4.177 6 C -0.026 4.026 7 C -0.227 4.227 8 C 0.183 3.817 9 O -0.285 6.285 10 C 0.085 3.915 11 H 0.065 0.935 12 C -0.179 4.179 13 C 0.025 3.975 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.200 4.200 23 C 0.143 3.857 24 F -0.139 7.139 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.378 0.622 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 9.384 -16.931 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.096 3.904 3 H 0.080 0.920 4 O -0.368 6.368 5 C -0.179 4.179 6 C -0.044 4.044 7 C -0.246 4.246 8 C 0.135 3.865 9 O -0.197 6.197 10 C 0.030 3.970 11 H 0.083 0.917 12 C -0.236 4.236 13 C -0.011 4.011 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.219 4.219 23 C 0.123 3.877 24 F -0.117 7.117 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.225 0.775 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.509 9.018 -16.088 18.450 hybrid contribution -1.289 0.506 0.004 1.385 sum -1.799 9.524 -16.084 18.778 Atomic orbital electron populations 1.22485 0.95592 1.03205 1.02493 1.20232 0.92664 0.94082 0.83443 0.91970 1.86508 1.77024 1.57579 1.15688 1.19293 1.09965 0.95519 0.93091 1.20565 0.93463 0.92444 0.97908 1.21489 1.08665 1.01620 0.92810 1.18867 0.89703 0.91196 0.86729 1.86295 1.77602 1.24126 1.31652 1.22966 0.94845 0.76890 1.02328 0.91661 1.22427 0.98454 1.02242 1.00477 1.19283 0.98320 0.95450 0.88092 1.21113 0.95494 1.36443 1.02377 0.92592 1.24970 0.97321 0.95173 0.96785 1.69942 1.33479 1.38223 1.11893 0.86585 0.84832 0.78558 0.78039 1.20650 1.21150 1.19809 1.20204 1.08829 0.93962 0.98947 1.16944 0.99470 0.77671 0.93602 1.91464 1.90380 1.32860 1.97032 0.91346 0.92192 0.91449 0.77466 0.84599 0.84419 0.91196 0.93142 0.91808 0.95197 0.94200 0.92891 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.52 37.16 0.35 -1.37 16 2 C 0.15 1.71 3.57 -27.88 -0.10 1.61 16 3 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 4 O -0.56 -5.68 12.15 -35.23 -0.43 -6.11 16 5 C -0.18 -2.49 5.07 -104.53 -0.53 -3.02 16 6 C -0.03 -0.37 9.34 -39.62 -0.37 -0.74 16 7 C -0.23 -3.60 8.24 -39.42 -0.32 -3.92 16 8 C 0.18 3.32 6.60 -39.23 -0.26 3.06 16 9 O -0.28 -5.96 9.55 -19.41 -0.19 -6.15 16 10 C 0.08 1.72 2.17 -26.73 -0.06 1.66 16 11 H 0.07 1.27 6.31 -51.93 -0.33 0.95 16 12 C -0.18 -2.94 9.17 37.16 0.34 -2.60 16 13 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 14 C -0.52 -14.43 8.88 -34.44 -0.31 -14.74 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.20 -3.36 9.97 -39.37 -0.39 -3.75 16 23 C 0.14 2.17 7.24 -39.44 -0.29 1.88 16 24 F -0.14 -2.00 16.56 2.25 0.04 -1.96 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.38 2.01 9.08 45.56 0.41 2.42 16 29 H 0.14 1.73 7.34 -52.49 -0.39 1.35 16 30 H 0.14 2.05 5.43 -52.49 -0.28 1.76 16 31 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -30.93 316.28 -6.52 -37.46 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.27 Total: 0.92 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.16 Total: -19.87 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.61 Total: -12.26 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.93 -6.52 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.968 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds