Wall clock time and date at job start Mon Mar 30 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47062 * 2 1 4 4 O 1.42897 * 109.47523 * 239.99645 * 2 1 3 5 5 C 1.50707 * 109.47051 * 119.99586 * 2 1 3 6 6 C 1.38244 * 119.95618 * 94.99827 * 5 2 1 7 7 C 1.38138 * 120.08009 * 179.97438 * 6 5 2 8 8 C 1.38771 * 119.99323 * 0.03014 * 7 6 5 9 9 O 1.35895 * 120.03946 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00272 * 354.56106 * 9 8 7 11 11 H 1.08993 * 109.47425 * 324.92997 * 10 9 8 12 12 C 1.53002 * 109.46603 * 84.92781 * 10 9 8 13 13 C 1.53001 * 109.47235 * 204.92667 * 10 9 8 14 14 C 1.50696 * 109.47039 * 64.99971 * 13 10 9 15 15 H 1.08003 * 120.00464 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99694 * 179.72020 * 14 13 10 17 17 N 1.31514 * 120.00637 * 0.28452 * 16 14 13 18 18 Si 1.86810 * 119.99858 * 180.27618 * 16 14 13 19 19 H 1.48498 * 109.46783 * 90.00596 * 18 16 14 20 20 H 1.48497 * 109.47301 * 210.00484 * 18 16 14 21 21 H 1.48501 * 109.47076 * 330.00633 * 18 16 14 22 22 C 1.38667 * 119.91624 * 0.24787 * 8 7 6 23 23 C 1.38388 * 119.91598 * 359.49563 * 22 8 7 24 24 F 1.35111 * 119.99673 * 180.27472 * 23 22 8 25 25 H 1.08999 * 109.47407 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.47133 * 60.00450 * 1 2 3 27 27 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 28 28 H 0.96699 * 113.99571 * 59.99888 * 4 2 1 29 29 H 1.08001 * 119.96247 * 0.02562 * 6 5 2 30 30 H 1.07999 * 120.00281 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47069 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47406 * 299.99858 * 12 10 9 33 33 H 1.09000 * 109.47193 * 60.00371 * 12 10 9 34 34 H 1.09007 * 109.46865 * 305.00249 * 13 10 9 35 35 H 1.09003 * 109.47120 * 185.00488 * 13 10 9 36 36 H 0.96996 * 120.00567 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.04154 * 179.74819 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3608 -2.0517 1.1676 7 6 2.8220 -2.7052 2.2938 8 6 2.9554 -2.0153 3.4904 9 8 3.4085 -2.6574 4.5991 10 6 3.6152 -4.0674 4.4933 11 1 2.8583 -4.4973 3.8373 12 6 5.0052 -4.3369 3.9135 13 6 3.5089 -4.7039 5.8805 14 6 2.1033 -4.5448 6.3999 15 1 1.3598 -4.0405 5.8003 16 6 1.7646 -5.0486 7.6378 17 7 2.6697 -5.6631 8.3678 18 14 0.0201 -4.8582 8.2784 19 1 -0.7925 -6.0272 7.8561 20 1 0.0429 -4.7809 9.7611 21 1 -0.5767 -3.6153 7.7270 22 6 2.6204 -0.6712 3.5548 23 6 2.1638 -0.0187 2.4230 24 9 1.8422 1.2922 2.4826 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -0.2702 -1.9978 29 1 2.2576 -2.5892 0.2365 30 1 3.0779 -3.7533 2.2433 31 1 5.1627 -5.4125 3.8324 32 1 5.0809 -3.8834 2.9252 33 1 5.7621 -3.9070 4.5696 34 1 4.2052 -4.2123 6.5601 35 1 3.7538 -5.7640 5.8136 36 1 2.4315 -6.0172 9.2389 37 1 2.7196 -0.1333 4.4860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709975247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:50 Heat of formation + Delta-G solvation = -144.033482 kcal Electronic energy + Delta-G solvation = -20301.830520 eV Core-core repulsion = 16957.702113 eV Total energy + Delta-G solvation = -3344.128407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.04293 -41.27018 -39.32142 -37.52926 -35.45885 -33.61431 -32.50091 -31.62346 -29.59498 -29.30989 -25.47812 -24.65522 -24.25001 -22.50592 -21.37540 -19.50877 -18.55963 -18.43626 -17.27645 -17.13217 -16.98054 -16.82581 -16.51127 -15.94170 -15.48940 -15.33503 -14.98195 -14.58217 -14.13869 -14.07690 -13.83581 -13.54299 -13.45691 -13.30638 -13.15900 -12.73041 -12.66935 -12.61096 -12.39067 -12.10320 -11.90829 -11.70720 -11.30902 -11.17199 -10.94770 -10.59530 -9.92622 -9.12090 -8.22084 -6.31091 0.07953 0.25387 1.37682 1.39079 1.50071 2.22123 2.39377 2.53340 3.11592 3.14757 3.32235 3.76266 3.81055 3.99175 4.08921 4.10422 4.20083 4.26620 4.31512 4.41561 4.47611 4.70749 4.80267 4.85949 4.98054 5.03428 5.07906 5.19342 5.23361 5.31335 5.31913 5.39214 5.46726 5.74175 5.76162 6.17133 6.57059 6.80714 6.92122 7.36687 8.89562 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.004668 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.526141 B = 5997.338808 C = 6530.394377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.157 3.843 3 H 0.071 0.929 4 O -0.572 6.572 5 C -0.170 4.170 6 C -0.023 4.023 7 C -0.224 4.224 8 C 0.154 3.846 9 O -0.315 6.315 10 C 0.092 3.908 11 H 0.072 0.928 12 C -0.169 4.169 13 C 0.028 3.972 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.272 1.272 22 C -0.213 4.213 23 C 0.139 3.861 24 F -0.134 7.134 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.056 0.944 34 H -0.001 1.001 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 9.983 -19.276 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.098 3.902 3 H 0.089 0.911 4 O -0.382 6.382 5 C -0.172 4.172 6 C -0.041 4.041 7 C -0.243 4.243 8 C 0.107 3.893 9 O -0.229 6.229 10 C 0.037 3.963 11 H 0.090 0.910 12 C -0.226 4.226 13 C -0.009 4.009 14 C -0.571 4.571 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.196 1.196 22 C -0.233 4.233 23 C 0.120 3.880 24 F -0.113 7.113 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.252 0.748 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.685 9.632 -18.469 20.898 hybrid contribution -0.933 0.400 0.636 1.198 sum -2.618 10.032 -17.833 20.628 Atomic orbital electron populations 1.22451 0.94315 1.03094 1.03527 1.20203 0.93464 0.93876 0.82677 0.91139 1.86446 1.77259 1.57983 1.16487 1.19731 1.07908 0.95586 0.93935 1.20807 0.92626 0.92614 0.98060 1.21618 1.08237 1.02013 0.92407 1.19047 0.91715 0.91712 0.86832 1.86203 1.78868 1.24121 1.33685 1.22694 0.97312 0.76946 0.99340 0.91018 1.22334 0.95716 1.03378 1.01165 1.19134 0.96222 0.94981 0.90594 1.21461 0.96721 1.36138 1.02742 0.93075 1.25826 1.01484 0.94843 0.97086 1.70054 1.35513 1.39123 1.12329 0.85557 0.79913 0.78793 0.77480 1.19328 1.20589 1.19624 1.20302 1.09417 0.93927 0.99606 1.16949 0.99564 0.77913 0.93617 1.91472 1.90303 1.32489 1.97022 0.92285 0.89272 0.92111 0.74838 0.82507 0.83520 0.89727 0.90824 0.92488 0.98263 0.95329 0.92659 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.52 71.98 0.69 -2.15 16 2 C 0.16 2.98 3.57 29.85 0.11 3.09 16 3 H 0.07 1.26 7.79 -2.39 -0.02 1.24 16 4 O -0.57 -9.46 12.15 -148.98 -1.81 -11.27 16 5 C -0.17 -4.43 5.07 -19.80 -0.10 -4.53 16 6 C -0.02 -0.61 9.34 22.25 0.21 -0.40 16 7 C -0.22 -6.82 8.24 22.37 0.18 -6.63 16 8 C 0.15 5.58 6.60 22.50 0.15 5.73 16 9 O -0.32 -13.54 9.55 -92.37 -0.88 -14.42 16 10 C 0.09 3.78 2.17 30.60 0.07 3.85 16 11 H 0.07 2.79 6.31 -2.39 -0.02 2.78 16 12 C -0.17 -5.45 9.17 71.98 0.66 -4.79 16 13 C 0.03 1.43 4.68 29.85 0.14 1.57 16 14 C -0.53 -30.48 8.88 25.60 0.23 -30.25 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 18 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.21 -7.22 9.97 22.41 0.22 -7.00 16 23 C 0.14 4.08 7.24 22.36 0.16 4.25 16 24 F -0.13 -3.71 16.56 44.97 0.74 -2.97 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.40 2.63 9.08 -74.06 -0.67 1.96 16 29 H 0.16 3.48 7.34 -2.91 -0.02 3.46 16 30 H 0.15 4.11 5.43 -2.91 -0.02 4.10 16 31 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.07 2.03 6.91 -2.39 -0.02 2.01 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -67.21 316.28 3.94 -63.27 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.41 Total: 10.76 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.17 Total: -36.48 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -2.69 Total: -25.69 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.74 Total: -2.97 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.21 3.94 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.766 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds