Wall clock time and date at job start Mon Mar 30 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.53003 * 109.47132 * 239.99555 * 2 1 3 5 5 C 1.50700 * 109.46930 * 174.99668 * 4 2 1 6 6 H 1.07998 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46994 * 90.00163 * 9 7 5 11 11 H 1.48505 * 109.46937 * 209.99999 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99865 * 9 7 5 13 13 O 1.42905 * 109.47026 * 120.00074 * 2 1 3 14 14 C 1.35903 * 116.99631 * 275.07346 * 13 2 1 15 15 C 1.38767 * 120.04430 * 5.43074 * 14 13 2 16 16 C 1.38126 * 119.99509 * 180.27610 * 15 14 13 17 17 C 1.38251 * 120.08016 * 359.47097 * 16 15 14 18 18 C 1.50698 * 119.95894 * 180.29908 * 17 16 15 19 19 H 1.09004 * 109.47428 * 215.25397 * 18 17 16 20 20 C 1.53005 * 109.47198 * 95.25149 * 18 17 16 21 21 O 1.42900 * 109.47492 * 335.25717 * 18 17 16 22 22 C 1.38478 * 120.08375 * 0.55153 * 17 16 15 23 23 F 1.35100 * 119.99691 * 179.72293 * 22 17 16 24 24 C 1.38379 * 120.00233 * 359.70691 * 22 17 16 25 25 H 1.09000 * 109.47191 * 299.99807 * 1 2 3 26 26 H 1.08997 * 109.47507 * 60.00622 * 1 2 3 27 27 H 1.09005 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47209 * 295.00144 * 4 2 1 29 29 H 1.09001 * 109.46642 * 55.00114 * 4 2 1 30 30 H 0.96996 * 120.00479 * 180.02562 * 8 7 5 31 31 H 1.08003 * 120.00415 * 0.02562 * 15 14 13 32 32 H 1.08003 * 119.96262 * 179.73105 * 16 15 14 33 33 H 1.09001 * 109.46450 * 60.00284 * 20 18 17 34 34 H 1.09002 * 109.47013 * 179.97438 * 20 18 17 35 35 H 1.08998 * 109.47482 * 300.00184 * 20 18 17 36 36 H 0.96699 * 114.00286 * 59.99173 * 21 18 17 37 37 H 1.08003 * 120.04188 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8363 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.7000 -2.2146 -1.7255 11 1 6.5295 -1.0685 -3.8558 12 1 6.5267 0.2033 -1.7910 13 8 2.0063 -0.6737 1.1668 14 6 2.1110 0.0622 2.3045 15 6 1.6573 1.3735 2.3280 16 6 1.7694 2.1223 3.4833 17 6 2.3232 1.5637 4.6202 18 6 2.4380 2.3811 5.8810 19 1 3.3538 2.1111 6.4070 20 6 1.2321 2.1030 6.7807 21 8 2.4726 3.7701 5.5468 22 6 2.7775 0.2557 4.6003 23 9 3.3235 -0.2866 5.7107 24 6 2.6718 -0.4960 3.4433 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7715 -1.2055 29 1 1.6053 -0.2618 -2.1369 30 1 4.0606 -2.2431 -4.0358 31 1 1.2203 1.8097 1.4420 32 1 1.4201 3.1442 3.4997 33 1 1.2058 1.0435 7.0356 34 1 1.3154 2.6939 7.6929 35 1 0.3164 2.3730 6.2547 36 1 1.6874 4.0809 5.0757 37 1 3.0255 -1.5163 3.4272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709975248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:54 Heat of formation + Delta-G solvation = -125.171751 kcal Electronic energy + Delta-G solvation = -20319.691483 eV Core-core repulsion = 16976.380982 eV Total energy + Delta-G solvation = -3343.310501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.91080 -40.06026 -38.39941 -36.37701 -33.55995 -31.96102 -31.44570 -30.40133 -28.61263 -27.52183 -24.05312 -23.34935 -22.93191 -21.38799 -20.07193 -18.40361 -17.14719 -16.78778 -16.46787 -15.94538 -15.64022 -15.14683 -14.94759 -14.67530 -14.45272 -14.08802 -13.85638 -13.11271 -12.97983 -12.84359 -12.61686 -12.20817 -12.09912 -11.86852 -11.78238 -11.44763 -11.31519 -11.07949 -10.84926 -10.77932 -10.44340 -10.34408 -10.08885 -9.46717 -9.18098 -8.79080 -8.43461 -7.90465 -6.06602 -4.08565 1.22408 1.37356 3.30790 3.36959 3.40814 3.54206 3.68459 4.18480 4.41725 4.42539 4.50150 4.79315 4.96741 4.99988 5.15559 5.30386 5.38568 5.43833 5.48354 5.53301 5.65143 5.77510 5.85060 5.86662 5.97909 6.06765 6.13453 6.34246 6.39032 6.53368 6.65618 6.82286 7.38945 7.40194 7.50189 7.89444 7.97117 8.29115 8.94991 9.55510 11.04710 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.004561 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.027987 B = 6136.909564 C = 6569.147834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.066 0.934 4 C 0.025 3.975 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.284 6.284 14 C 0.182 3.818 15 C -0.221 4.221 16 C -0.045 4.045 17 C -0.209 4.209 18 C 0.154 3.846 19 H 0.106 0.894 20 C -0.179 4.179 21 O -0.556 6.556 22 C 0.144 3.856 23 F -0.137 7.137 24 C -0.197 4.197 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.373 0.627 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 7.788 15.446 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 O -0.196 6.196 14 C 0.134 3.866 15 C -0.239 4.239 16 C -0.063 4.063 17 C -0.211 4.211 18 C 0.095 3.905 19 H 0.124 0.876 20 C -0.236 4.236 21 O -0.362 6.362 22 C 0.125 3.875 23 F -0.116 7.116 24 C -0.216 4.216 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.221 0.779 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.193 7.421 15.559 18.317 hybrid contribution 0.528 -0.045 -0.372 0.648 sum -5.665 7.376 15.187 17.808 Atomic orbital electron populations 1.22425 0.96739 1.02797 1.01598 1.22979 0.91986 0.97269 0.84813 0.91654 1.19281 0.96676 0.96548 0.88625 1.21110 0.91617 1.34778 1.08039 0.92593 1.24968 0.98532 0.95141 0.95580 1.69939 1.35644 1.35849 1.12075 0.86578 0.85626 0.78630 0.77139 1.20553 1.21174 1.19845 1.86309 1.79220 1.38023 1.16071 1.18854 0.90626 0.89834 0.87288 1.21415 1.07822 0.94599 1.00092 1.20411 0.95884 0.98967 0.91079 1.20272 1.07879 0.94400 0.98519 1.20544 0.99442 0.79835 0.90682 0.87637 1.22472 0.98111 1.02877 1.00150 1.86623 1.46335 1.23939 1.79329 1.16955 0.96708 0.91254 0.82620 1.91469 1.83329 1.86085 1.50693 1.20277 1.07974 1.02435 0.90962 0.93226 0.91155 0.91787 0.95205 0.94175 0.92867 0.84343 0.85342 0.91363 0.91546 0.92084 0.77900 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.17 37.16 0.34 -2.47 16 2 C 0.08 1.67 2.17 -26.73 -0.06 1.61 16 3 H 0.07 1.24 6.31 -51.93 -0.33 0.91 16 4 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.52 -14.36 8.88 -34.44 -0.31 -14.67 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 O -0.28 -5.79 9.55 -19.44 -0.19 -5.98 16 14 C 0.18 3.16 6.60 -39.23 -0.26 2.90 16 15 C -0.22 -3.23 8.24 -39.43 -0.32 -3.55 16 16 C -0.05 -0.56 9.30 -39.62 -0.37 -0.93 16 17 C -0.21 -2.70 5.08 -104.53 -0.53 -3.23 16 18 C 0.15 1.68 3.60 -27.88 -0.10 1.58 16 19 H 0.11 1.21 7.79 -51.93 -0.40 0.80 16 20 C -0.18 -1.58 9.52 37.16 0.35 -1.23 16 21 O -0.56 -5.97 12.98 -35.23 -0.46 -6.42 16 22 C 0.14 2.10 7.24 -39.44 -0.29 1.81 16 23 F -0.14 -1.93 16.56 2.25 0.04 -1.90 16 24 C -0.20 -3.20 9.97 -39.37 -0.39 -3.59 16 25 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.14 1.89 5.43 -52.48 -0.28 1.61 16 32 H 0.13 1.15 6.40 -52.48 -0.34 0.81 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.37 2.63 7.32 45.56 0.33 2.97 16 37 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -30.66 314.39 -6.61 -37.27 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.30 Total: 0.91 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.16 Total: -19.68 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.64 Total: -12.40 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.66 -6.61 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.900 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds