Wall clock time and date at job start Mon Mar 30 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47398 * 2 1 4 4 C 1.53003 * 109.47132 * 239.99555 * 2 1 3 5 5 C 1.50700 * 109.46930 * 174.99668 * 4 2 1 6 6 H 1.07998 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46994 * 90.00163 * 9 7 5 11 11 H 1.48505 * 109.46937 * 209.99999 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99865 * 9 7 5 13 13 O 1.42905 * 109.47026 * 120.00074 * 2 1 3 14 14 C 1.35903 * 116.99631 * 275.07346 * 13 2 1 15 15 C 1.38767 * 120.04430 * 5.43074 * 14 13 2 16 16 C 1.38126 * 119.99509 * 180.27610 * 15 14 13 17 17 C 1.38251 * 120.08016 * 359.47097 * 16 15 14 18 18 C 1.50698 * 119.95894 * 180.29908 * 17 16 15 19 19 H 1.09004 * 109.47428 * 215.25397 * 18 17 16 20 20 C 1.53005 * 109.47198 * 95.25149 * 18 17 16 21 21 O 1.42900 * 109.47492 * 335.25717 * 18 17 16 22 22 C 1.38478 * 120.08375 * 0.55153 * 17 16 15 23 23 F 1.35100 * 119.99691 * 179.72293 * 22 17 16 24 24 C 1.38379 * 120.00233 * 359.70691 * 22 17 16 25 25 H 1.09000 * 109.47191 * 299.99807 * 1 2 3 26 26 H 1.08997 * 109.47507 * 60.00622 * 1 2 3 27 27 H 1.09005 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47209 * 295.00144 * 4 2 1 29 29 H 1.09001 * 109.46642 * 55.00114 * 4 2 1 30 30 H 0.96996 * 120.00479 * 180.02562 * 8 7 5 31 31 H 1.08003 * 120.00415 * 0.02562 * 15 14 13 32 32 H 1.08003 * 119.96262 * 179.73105 * 16 15 14 33 33 H 1.09001 * 109.46450 * 60.00284 * 20 18 17 34 34 H 1.09002 * 109.47013 * 179.97438 * 20 18 17 35 35 H 1.08998 * 109.47482 * 300.00184 * 20 18 17 36 36 H 0.96699 * 114.00286 * 59.99173 * 21 18 17 37 37 H 1.08003 * 120.04188 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8363 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.7000 -2.2146 -1.7255 11 1 6.5295 -1.0685 -3.8558 12 1 6.5267 0.2033 -1.7910 13 8 2.0063 -0.6737 1.1668 14 6 2.1110 0.0622 2.3045 15 6 1.6573 1.3735 2.3280 16 6 1.7694 2.1223 3.4833 17 6 2.3232 1.5637 4.6202 18 6 2.4380 2.3811 5.8810 19 1 3.3538 2.1111 6.4070 20 6 1.2321 2.1030 6.7807 21 8 2.4726 3.7701 5.5468 22 6 2.7775 0.2557 4.6003 23 9 3.3235 -0.2866 5.7107 24 6 2.6718 -0.4960 3.4433 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7715 -1.2055 29 1 1.6053 -0.2618 -2.1369 30 1 4.0606 -2.2431 -4.0358 31 1 1.2203 1.8097 1.4420 32 1 1.4201 3.1442 3.4997 33 1 1.2058 1.0435 7.0356 34 1 1.3154 2.6939 7.6929 35 1 0.3164 2.3730 6.2547 36 1 1.6874 4.0809 5.0757 37 1 3.0255 -1.5163 3.4272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709975248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:54 Heat of formation + Delta-G solvation = -144.577301 kcal Electronic energy + Delta-G solvation = -20320.532971 eV Core-core repulsion = 16976.380982 eV Total energy + Delta-G solvation = -3344.151989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04094 -41.30535 -39.50073 -37.46563 -35.44498 -33.57320 -32.45252 -31.61819 -29.63739 -29.31371 -25.46739 -24.68933 -24.25825 -22.53872 -21.48077 -19.61946 -18.56554 -18.14993 -17.93684 -17.21514 -16.79182 -16.60473 -16.09780 -15.98777 -15.74649 -15.40492 -14.89308 -14.58974 -14.12452 -13.88004 -13.83147 -13.82446 -13.42199 -13.28235 -13.07995 -12.83523 -12.69216 -12.55628 -12.39963 -12.11611 -11.99069 -11.64974 -11.31596 -11.20901 -11.04940 -10.60684 -9.93665 -9.12109 -8.23111 -6.31956 0.08155 0.23595 1.37126 1.38398 1.48812 2.22119 2.38440 2.52770 3.11378 3.27307 3.46659 3.53216 3.73544 3.94501 4.08835 4.13728 4.21026 4.22803 4.32249 4.39959 4.47904 4.74299 4.81043 4.88660 4.94507 5.02033 5.02810 5.20048 5.23182 5.29769 5.31082 5.37991 5.46456 5.73613 5.75693 6.16345 6.57573 6.78507 6.80152 7.35921 8.88488 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.004561 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.027987 B = 6136.909564 C = 6569.147834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.317 6.317 14 C 0.151 3.849 15 C -0.219 4.219 16 C -0.036 4.036 17 C -0.198 4.198 18 C 0.157 3.843 19 H 0.098 0.902 20 C -0.173 4.173 21 O -0.565 6.565 22 C 0.136 3.864 23 F -0.137 7.137 24 C -0.214 4.214 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.054 0.946 28 H -0.002 1.002 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.390 0.610 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 10.077 16.898 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.191 1.191 13 O -0.231 6.231 14 C 0.104 3.896 15 C -0.237 4.237 16 C -0.054 4.054 17 C -0.200 4.200 18 C 0.098 3.902 19 H 0.116 0.884 20 C -0.231 4.231 21 O -0.374 6.374 22 C 0.117 3.883 23 F -0.115 7.115 24 C -0.234 4.234 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.189 0.811 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.498 9.725 17.024 20.655 hybrid contribution 0.616 -0.721 -0.727 1.195 sum -5.882 9.004 16.297 19.526 Atomic orbital electron populations 1.22329 0.93659 1.02934 1.03596 1.22695 0.94271 0.96324 0.82980 0.90915 1.19137 0.95396 0.95209 0.91255 1.21470 0.93374 1.34478 1.07755 0.93115 1.25810 1.03225 0.94850 0.95309 1.70047 1.37457 1.36746 1.12722 0.85581 0.80052 0.78751 0.77510 1.20341 1.20222 1.19058 1.86213 1.80500 1.39321 1.17044 1.19070 0.92839 0.91161 0.86496 1.21601 1.07243 0.93470 1.01424 1.20856 0.94406 1.00468 0.89639 1.20647 1.05967 0.93609 0.99727 1.20523 1.00163 0.79766 0.89763 0.88411 1.22421 0.97561 1.02755 1.00336 1.86611 1.47743 1.23347 1.79687 1.17050 0.97176 0.91971 0.82151 1.91467 1.83371 1.86243 1.50461 1.20337 1.08768 1.02532 0.91744 0.90496 0.89738 0.92643 0.98355 0.95288 0.92653 0.83198 0.81121 0.91967 0.90330 0.90769 0.75912 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.17 71.98 0.66 -4.47 16 2 C 0.09 3.66 2.17 30.59 0.07 3.73 16 3 H 0.07 2.71 6.31 -2.39 -0.02 2.70 16 4 C 0.03 1.38 4.68 29.85 0.14 1.52 16 5 C -0.53 -30.27 8.88 25.60 0.23 -30.04 16 6 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 7 C 0.01 0.35 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 O -0.32 -13.24 9.55 -92.46 -0.88 -14.13 16 14 C 0.15 5.23 6.60 22.50 0.15 5.37 16 15 C -0.22 -5.94 8.24 22.37 0.18 -5.75 16 16 C -0.04 -0.76 9.30 22.25 0.21 -0.56 16 17 C -0.20 -4.60 5.08 -19.80 -0.10 -4.70 16 18 C 0.16 2.96 3.60 29.85 0.11 3.07 16 19 H 0.10 2.02 7.79 -2.38 -0.02 2.00 16 20 C -0.17 -2.51 9.52 71.98 0.69 -1.83 16 21 O -0.57 -9.94 12.98 -148.98 -1.93 -11.88 16 22 C 0.14 3.85 7.24 22.36 0.16 4.01 16 23 F -0.14 -3.78 16.56 44.97 0.74 -3.04 16 24 C -0.21 -7.05 9.97 22.41 0.22 -6.83 16 25 H 0.08 1.92 6.91 -2.39 -0.02 1.90 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.15 3.67 5.43 -2.91 -0.02 3.66 16 32 H 0.17 2.13 6.40 -2.91 -0.02 2.12 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.39 3.63 7.32 -74.06 -0.54 3.09 16 37 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -67.51 314.39 3.95 -63.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.54 Total: 9.80 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.17 Total: -35.67 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.57 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -2.82 Total: -26.00 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.74 Total: -3.04 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.51 3.95 -63.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.020 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds