Wall clock time and date at job start Mon Mar 30 2020 07:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29028 * 124.91311 * 2 1 4 4 C 1.31785 * 117.12675 * 179.75110 * 3 2 1 5 5 C 1.50699 * 122.75312 * 180.33378 * 4 3 2 6 6 C 1.33643 * 114.49480 * 0.52520 * 4 3 2 7 7 C 1.50702 * 126.03529 * 179.78903 * 6 4 3 8 8 H 1.09000 * 109.46770 * 344.71550 * 7 6 4 9 9 C 1.52999 * 109.47175 * 104.71331 * 7 6 4 10 10 N 1.46900 * 109.46906 * 224.71240 * 7 6 4 11 11 C 1.46904 * 110.99879 * 153.78312 * 10 7 6 12 12 H 1.09002 * 109.46693 * 346.64776 * 11 10 7 13 13 C 1.53003 * 109.47140 * 106.64483 * 11 10 7 14 14 C 1.52990 * 109.47138 * 226.64803 * 11 10 7 15 15 C 1.50697 * 109.47459 * 64.99774 * 14 11 10 16 16 H 1.08003 * 120.00027 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00243 * 179.97438 * 15 14 11 18 18 N 1.31507 * 119.99689 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99977 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47248 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47209 * 119.99841 * 19 17 15 22 22 H 1.48500 * 109.46860 * 240.00118 * 19 17 15 23 23 S 1.70967 * 124.92092 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47281 * 269.95321 * 1 2 3 25 25 H 1.08999 * 109.47502 * 29.95577 * 1 2 3 26 26 H 1.09000 * 109.46910 * 149.95989 * 1 2 3 27 27 H 1.09001 * 109.47056 * 270.19990 * 5 4 3 28 28 H 1.09001 * 109.47020 * 30.20782 * 5 4 3 29 29 H 1.08999 * 109.46944 * 150.20223 * 5 4 3 30 30 H 1.09006 * 109.47163 * 302.73191 * 9 7 6 31 31 H 1.08998 * 109.47053 * 62.73058 * 9 7 6 32 32 H 1.08997 * 109.47427 * 182.73388 * 9 7 6 33 33 H 1.00900 * 111.00111 * 277.73612 * 10 7 6 34 34 H 1.08992 * 109.47209 * 185.44538 * 13 11 10 35 35 H 1.09004 * 109.46888 * 305.44689 * 13 11 10 36 36 H 1.08996 * 109.46950 * 65.44301 * 13 11 10 37 37 H 1.09005 * 109.47303 * 185.00020 * 14 11 10 38 38 H 1.09008 * 109.47051 * 304.99868 * 14 11 10 39 39 H 0.97002 * 119.99782 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0051 5 6 4.5306 2.0248 0.0131 6 6 3.9354 -0.4005 -0.0015 7 6 5.3575 -0.8992 -0.0024 8 1 6.0287 -0.0824 -0.2680 9 6 5.7158 -1.4214 1.3903 10 7 5.4951 -1.9846 -0.9827 11 6 6.8767 -2.0794 -1.4727 12 1 7.4274 -1.1846 -1.1823 13 6 7.5498 -3.3120 -0.8655 14 6 6.8697 -2.2015 -2.9977 15 6 6.3190 -0.9349 -3.6006 16 1 6.0049 -0.1240 -2.9600 17 6 6.2160 -0.8111 -4.9700 18 7 6.5980 -1.7986 -5.7499 19 14 5.5339 0.7592 -5.7172 20 1 5.1782 1.7095 -4.6330 21 1 6.5590 1.3740 -6.5983 22 1 4.3218 0.4422 -6.5143 23 16 2.4857 -1.4018 -0.0006 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3634 0.8903 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 4.7685 2.3066 -1.0126 28 1 4.0896 2.8764 0.5311 29 1 5.4422 1.7196 0.5268 30 1 5.5671 -0.6296 2.1246 31 1 5.0765 -2.2694 1.6359 32 1 6.7589 -1.7372 1.4028 33 1 5.1881 -2.8637 -0.5942 34 1 8.6014 -3.3296 -1.1513 35 1 7.4691 -3.2718 0.2208 36 1 7.0582 -4.2126 -1.2332 37 1 7.8874 -2.3609 -3.3542 38 1 6.2454 -3.0452 -3.2918 39 1 6.5252 -1.7117 -6.7133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710017725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:06 Heat of formation + Delta-G solvation = 25.195786 kcal Electronic energy + Delta-G solvation = -18760.014816 eV Core-core repulsion = 16021.730668 eV Total energy + Delta-G solvation = -2738.284148 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69787 -37.39395 -33.92784 -32.50122 -31.44619 -29.09791 -27.84594 -27.37654 -26.76718 -23.03296 -22.65755 -21.70006 -20.00142 -18.42813 -17.44531 -16.22587 -15.29020 -15.02191 -14.70680 -14.34602 -14.06972 -13.56576 -13.21741 -13.17379 -12.96014 -12.81893 -12.51060 -12.23333 -12.07595 -11.87354 -11.78674 -11.62664 -11.44881 -11.29118 -10.91977 -10.70431 -10.52769 -10.41604 -10.05773 -9.47339 -9.25996 -8.94528 -8.84213 -8.24499 -8.21570 -7.63014 -5.85322 -3.82289 1.03275 1.66825 2.10790 3.06376 3.39397 3.47130 3.52336 4.29708 4.59028 4.68087 5.03855 5.15171 5.24832 5.40175 5.41855 5.44030 5.52469 5.53180 5.72007 5.74629 5.80206 5.84951 5.88002 5.98916 6.00709 6.10728 6.14483 6.26640 6.38081 6.56134 6.61776 7.03584 7.51068 7.69502 8.01391 8.04608 8.06245 8.16506 8.62561 9.22110 9.78833 11.26901 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.007323 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.867629 B = 3822.478264 C = 4811.237282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.021 3.979 3 N -0.470 5.470 4 C 0.051 3.949 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.159 3.841 8 H 0.099 0.901 9 C -0.178 4.178 10 N -0.657 5.657 11 C 0.090 3.910 12 H 0.058 0.942 13 C -0.174 4.174 14 C 0.035 3.965 15 C -0.484 4.484 16 H 0.054 0.946 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.884 3.116 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.287 1.287 23 S 0.134 5.866 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.329 0.671 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.019 0.981 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 0.699 15.516 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.257 4.257 3 N -0.186 5.186 4 C -0.080 4.080 5 C -0.135 4.135 6 C -0.299 4.299 7 C 0.046 3.954 8 H 0.117 0.883 9 C -0.238 4.238 10 N -0.287 5.287 11 C -0.018 4.018 12 H 0.076 0.924 13 C -0.233 4.233 14 C -0.003 4.003 15 C -0.523 4.523 16 H 0.072 0.928 17 C -0.148 4.148 18 N -0.544 5.544 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.213 1.213 23 S 0.389 5.611 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.198 0.468 14.787 16.452 hybrid contribution 0.561 1.112 0.067 1.247 sum -6.637 1.581 14.854 16.346 Atomic orbital electron populations 1.20338 0.85746 1.03908 1.03178 1.26776 1.01400 0.91722 1.05753 1.66055 1.04521 1.31910 1.16075 1.20015 0.90040 0.94041 1.03928 1.20317 0.95587 0.94400 1.03192 1.25732 0.99431 0.95273 1.09482 1.20031 0.88971 0.96025 0.90366 0.88335 1.22635 1.01822 1.01411 0.97886 1.60586 1.24654 1.06360 1.37074 1.21874 0.85410 0.95264 0.99287 0.92405 1.22508 1.01634 1.00198 0.98949 1.19133 0.96557 0.97682 0.86919 1.21121 1.39599 1.00710 0.90845 0.92764 1.24961 0.96179 0.96089 0.97537 1.69965 1.49290 1.31494 1.03685 0.86657 0.78622 0.84228 0.79227 1.19892 1.21370 1.21325 1.83714 0.97412 1.12057 1.67904 0.90220 0.89728 0.90372 0.90472 0.91217 0.91043 0.92315 0.92567 0.91775 0.85303 0.92414 0.94169 0.92630 0.96628 0.96264 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.46 36.00 0.38 -0.38 16 2 C 0.02 0.32 7.39 -13.46 -0.10 0.22 16 3 N -0.47 -8.07 10.53 -8.06 -0.08 -8.15 16 4 C 0.05 0.87 6.74 -84.22 -0.57 0.31 16 5 C -0.08 -1.10 9.81 36.01 0.35 -0.75 16 6 C -0.18 -2.94 5.47 -35.92 -0.20 -3.13 16 7 C 0.16 2.51 2.69 -68.86 -0.19 2.33 16 8 H 0.10 1.65 5.98 -51.93 -0.31 1.34 16 9 C -0.18 -2.22 9.08 37.16 0.34 -1.88 16 10 N -0.66 -11.91 5.74 -100.95 -0.58 -12.49 16 11 C 0.09 1.75 2.62 -67.71 -0.18 1.58 16 12 H 0.06 1.13 7.15 -51.93 -0.37 0.76 16 13 C -0.17 -2.77 9.06 37.16 0.34 -2.43 16 14 C 0.03 0.88 4.65 -27.89 -0.13 0.75 16 15 C -0.48 -13.69 8.84 -34.44 -0.30 -14.00 16 16 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 18 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 19 Si 0.88 22.69 29.54 -169.99 -5.02 17.67 16 20 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 S 0.13 1.98 23.07 -107.50 -2.48 -0.50 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.90 7.04 -51.93 -0.37 0.54 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 33 H 0.33 5.41 7.87 -39.29 -0.31 5.10 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.54 6.81 -51.93 -0.35 0.18 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -32.41 333.07 -9.02 -41.43 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.26 Total: -0.01 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.35 Total: -15.98 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.07 Total: -47.62 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.48 Total: -0.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.41 -9.02 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.626 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds