Wall clock time and date at job start Mon Mar 30 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29028 * 124.91311 * 2 1 4 4 C 1.31785 * 117.12675 * 179.75110 * 3 2 1 5 5 C 1.50699 * 122.75312 * 180.33378 * 4 3 2 6 6 C 1.33643 * 114.49480 * 0.52520 * 4 3 2 7 7 C 1.50702 * 126.03529 * 179.78903 * 6 4 3 8 8 H 1.09000 * 109.46770 * 344.71550 * 7 6 4 9 9 C 1.52999 * 109.47175 * 104.71331 * 7 6 4 10 10 N 1.46900 * 109.46906 * 224.71240 * 7 6 4 11 11 C 1.46904 * 110.99879 * 153.78312 * 10 7 6 12 12 H 1.09002 * 109.46693 * 346.64776 * 11 10 7 13 13 C 1.53003 * 109.47140 * 106.64483 * 11 10 7 14 14 C 1.52990 * 109.47138 * 226.64803 * 11 10 7 15 15 C 1.50697 * 109.47459 * 64.99774 * 14 11 10 16 16 H 1.08003 * 120.00027 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00243 * 179.97438 * 15 14 11 18 18 N 1.31507 * 119.99689 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99977 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47248 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47209 * 119.99841 * 19 17 15 22 22 H 1.48500 * 109.46860 * 240.00118 * 19 17 15 23 23 S 1.70967 * 124.92092 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47281 * 269.95321 * 1 2 3 25 25 H 1.08999 * 109.47502 * 29.95577 * 1 2 3 26 26 H 1.09000 * 109.46910 * 149.95989 * 1 2 3 27 27 H 1.09001 * 109.47056 * 270.19990 * 5 4 3 28 28 H 1.09001 * 109.47020 * 30.20782 * 5 4 3 29 29 H 1.08999 * 109.46944 * 150.20223 * 5 4 3 30 30 H 1.09006 * 109.47163 * 302.73191 * 9 7 6 31 31 H 1.08998 * 109.47053 * 62.73058 * 9 7 6 32 32 H 1.08997 * 109.47427 * 182.73388 * 9 7 6 33 33 H 1.00900 * 111.00111 * 277.73612 * 10 7 6 34 34 H 1.08992 * 109.47209 * 185.44538 * 13 11 10 35 35 H 1.09004 * 109.46888 * 305.44689 * 13 11 10 36 36 H 1.08996 * 109.46950 * 65.44301 * 13 11 10 37 37 H 1.09005 * 109.47303 * 185.00020 * 14 11 10 38 38 H 1.09008 * 109.47051 * 304.99868 * 14 11 10 39 39 H 0.97002 * 119.99782 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0051 5 6 4.5306 2.0248 0.0131 6 6 3.9354 -0.4005 -0.0015 7 6 5.3575 -0.8992 -0.0024 8 1 6.0287 -0.0824 -0.2680 9 6 5.7158 -1.4214 1.3903 10 7 5.4951 -1.9846 -0.9827 11 6 6.8767 -2.0794 -1.4727 12 1 7.4274 -1.1846 -1.1823 13 6 7.5498 -3.3120 -0.8655 14 6 6.8697 -2.2015 -2.9977 15 6 6.3190 -0.9349 -3.6006 16 1 6.0049 -0.1240 -2.9600 17 6 6.2160 -0.8111 -4.9700 18 7 6.5980 -1.7986 -5.7499 19 14 5.5339 0.7592 -5.7172 20 1 5.1782 1.7095 -4.6330 21 1 6.5590 1.3740 -6.5983 22 1 4.3218 0.4422 -6.5143 23 16 2.4857 -1.4018 -0.0006 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3634 0.8903 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 4.7685 2.3066 -1.0126 28 1 4.0896 2.8764 0.5311 29 1 5.4422 1.7196 0.5268 30 1 5.5671 -0.6296 2.1246 31 1 5.0765 -2.2694 1.6359 32 1 6.7589 -1.7372 1.4028 33 1 5.1881 -2.8637 -0.5942 34 1 8.6014 -3.3296 -1.1513 35 1 7.4691 -3.2718 0.2208 36 1 7.0582 -4.2126 -1.2332 37 1 7.8874 -2.3609 -3.3542 38 1 6.2454 -3.0452 -3.2918 39 1 6.5252 -1.7117 -6.7133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710017725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:05 Heat of formation + Delta-G solvation = 4.299636 kcal Electronic energy + Delta-G solvation = -18760.920941 eV Core-core repulsion = 16021.730668 eV Total energy + Delta-G solvation = -2739.190273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89078 -38.79873 -35.51601 -34.26289 -32.80823 -30.15126 -29.45451 -28.92414 -27.94686 -25.02890 -23.76589 -22.90570 -21.61356 -19.68601 -18.63807 -18.37677 -16.73035 -16.40098 -16.25545 -15.91005 -15.39184 -14.77542 -14.46569 -14.40495 -14.15374 -14.05760 -13.81217 -13.50241 -13.38383 -13.27109 -13.19230 -13.05554 -12.77623 -12.72223 -12.49737 -12.40154 -12.13990 -11.90268 -11.86926 -11.23345 -11.03645 -10.53574 -10.49191 -10.05770 -9.42541 -9.03717 -8.11094 -6.13939 -0.14569 0.52071 0.91930 1.34188 1.36591 1.47845 1.84668 2.43584 3.19431 3.24517 3.39124 3.88247 4.08848 4.12126 4.27878 4.36070 4.44571 4.46541 4.57674 4.59089 4.67247 4.71599 4.78950 4.85292 4.96357 4.98856 5.02982 5.10643 5.15377 5.31194 5.34080 5.41157 5.54246 5.68268 5.90987 6.33396 6.44310 6.72887 6.86616 7.00479 7.50971 9.01410 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.007323 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.867629 B = 3822.478264 C = 4811.237282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.020 3.980 3 N -0.500 5.500 4 C 0.033 3.967 5 C -0.074 4.074 6 C -0.201 4.201 7 C 0.163 3.837 8 H 0.085 0.915 9 C -0.167 4.167 10 N -0.677 5.677 11 C 0.102 3.898 12 H 0.057 0.943 13 C -0.164 4.164 14 C 0.039 3.961 15 C -0.489 4.489 16 H 0.051 0.949 17 C -0.003 4.003 18 N -0.939 5.939 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.287 1.287 23 S 0.149 5.851 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.339 0.661 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.052 0.948 37 H -0.008 1.008 38 H -0.011 1.011 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 0.950 17.171 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.258 4.258 3 N -0.216 5.216 4 C -0.099 4.099 5 C -0.133 4.133 6 C -0.323 4.323 7 C 0.050 3.950 8 H 0.103 0.897 9 C -0.226 4.226 10 N -0.308 5.308 11 C -0.007 4.007 12 H 0.075 0.925 13 C -0.222 4.222 14 C 0.001 3.999 15 C -0.527 4.527 16 H 0.069 0.931 17 C -0.199 4.199 18 N -0.581 5.581 19 Si 0.771 3.229 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.213 1.213 23 S 0.405 5.595 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.999 0.720 16.461 18.316 hybrid contribution 0.738 1.021 -0.448 1.337 sum -7.261 1.741 16.013 17.668 Atomic orbital electron populations 1.20551 0.82872 1.04830 1.05026 1.27563 1.03166 0.91276 1.03758 1.66127 1.04804 1.32949 1.17729 1.20387 0.90561 0.94847 1.04080 1.20341 0.96086 0.94442 1.02421 1.25901 1.00332 0.95698 1.10361 1.19982 0.88545 0.94781 0.91646 0.89684 1.22509 1.02468 1.01931 0.95705 1.60322 1.23894 1.07579 1.38967 1.21508 0.86773 0.97070 0.95324 0.92471 1.22369 1.01113 0.97984 1.00751 1.19033 0.94090 0.95278 0.91483 1.21456 1.38728 1.01525 0.91014 0.93116 1.25740 0.96806 0.99035 0.98299 1.70080 1.50719 1.33397 1.03943 0.85700 0.77999 0.80731 0.78425 1.19530 1.20372 1.21285 1.83569 0.96633 1.11690 1.67627 0.87799 0.89549 0.88630 0.92213 0.90045 0.89416 0.91175 0.91739 0.90799 0.84219 0.92261 0.90846 0.92919 0.99004 0.99235 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.46 71.24 0.75 -0.62 16 2 C 0.02 0.56 7.39 88.52 0.65 1.22 16 3 N -0.50 -16.68 10.53 -179.41 -1.89 -18.57 16 4 C 0.03 1.09 6.74 41.52 0.28 1.37 16 5 C -0.07 -2.11 9.81 71.24 0.70 -1.41 16 6 C -0.20 -6.45 5.47 24.64 0.13 -6.31 16 7 C 0.16 4.94 2.69 44.17 0.12 5.05 16 8 H 0.09 2.78 5.98 -2.39 -0.01 2.77 16 9 C -0.17 -3.71 9.08 71.98 0.65 -3.06 16 10 N -0.68 -23.94 5.74 -473.31 -2.71 -26.65 16 11 C 0.10 3.92 2.62 44.91 0.12 4.04 16 12 H 0.06 2.19 7.15 -2.39 -0.02 2.17 16 13 C -0.16 -4.91 9.06 71.98 0.65 -4.26 16 14 C 0.04 2.01 4.65 29.84 0.14 2.15 16 15 C -0.49 -28.04 8.84 25.60 0.23 -27.82 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 19 Si 0.94 47.06 29.54 68.60 2.03 49.08 16 20 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 23 S 0.15 4.19 23.07 -56.49 -1.30 2.89 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 2.14 7.04 -2.39 -0.02 2.13 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.33 8.08 -2.39 -0.02 1.32 16 32 H 0.07 1.50 6.91 -2.39 -0.02 1.48 16 33 H 0.34 10.64 7.87 -89.69 -0.71 9.94 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.73 6.81 -2.38 -0.02 1.71 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -70.35 333.07 1.61 -68.74 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.33 Total: 12.26 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.88 Total: -29.37 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.32 Total: -103.60 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.30 Total: 2.89 kcal Total: -70.35 1.61 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.039 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds