Wall clock time and date at job start Mon Mar 30 2020 07:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29026 * 124.91738 * 2 1 4 4 C 1.31781 * 117.12290 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74804 * 179.97438 * 4 3 2 6 6 C 1.33631 * 114.50486 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.04323 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47122 * 14.99958 * 7 6 4 9 9 C 1.53006 * 109.47184 * 255.00072 * 7 6 4 10 10 N 1.46899 * 109.47365 * 134.99835 * 7 6 4 11 11 C 1.46903 * 110.99807 * 205.00210 * 10 7 6 12 12 H 1.08997 * 109.47215 * 324.99479 * 11 10 7 13 13 C 1.53001 * 109.47293 * 85.00045 * 11 10 7 14 14 C 1.53002 * 109.46765 * 204.99932 * 11 10 7 15 15 C 1.50697 * 109.47417 * 65.00407 * 14 11 10 16 16 H 1.07999 * 119.99917 * 359.97438 * 15 14 11 17 17 C 1.37869 * 120.00277 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00355 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99997 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46943 * 90.00171 * 19 17 15 21 21 H 1.48497 * 109.47418 * 210.00004 * 19 17 15 22 22 H 1.48502 * 109.47102 * 330.00332 * 19 17 15 23 23 S 1.70984 * 124.91583 * 180.31170 * 2 1 3 24 24 H 1.08996 * 109.47156 * 90.02316 * 1 2 3 25 25 H 1.09006 * 109.47302 * 210.02928 * 1 2 3 26 26 H 1.09003 * 109.47183 * 330.02542 * 1 2 3 27 27 H 1.09004 * 109.47706 * 270.00295 * 5 4 3 28 28 H 1.09001 * 109.47386 * 30.00320 * 5 4 3 29 29 H 1.09006 * 109.47004 * 149.99996 * 5 4 3 30 30 H 1.09001 * 109.47002 * 299.99404 * 9 7 6 31 31 H 1.08993 * 109.46955 * 59.99842 * 9 7 6 32 32 H 1.09000 * 109.47050 * 179.97438 * 9 7 6 33 33 H 1.00901 * 110.99898 * 328.95530 * 10 7 6 34 34 H 1.08995 * 109.47229 * 179.97438 * 13 11 10 35 35 H 1.08998 * 109.46899 * 299.99701 * 13 11 10 36 36 H 1.09004 * 109.47059 * 59.99551 * 13 11 10 37 37 H 1.09009 * 109.47057 * 185.00024 * 14 11 10 38 38 H 1.09002 * 109.47270 * 304.99640 * 14 11 10 39 39 H 0.96996 * 120.00110 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4006 0.0004 7 6 5.3574 -0.8995 0.0004 8 1 6.0288 -0.0831 0.2664 9 6 5.7150 -1.4206 -1.3930 10 7 5.4953 -1.9858 0.9797 11 6 6.8832 -2.0997 1.4475 12 1 7.5630 -1.8651 0.6285 13 6 7.1151 -1.1201 2.5996 14 6 7.1423 -3.5276 1.9322 15 6 7.0340 -4.4802 0.7695 16 1 6.8031 -4.1049 -0.2164 17 6 7.2288 -5.8311 0.9647 18 7 7.1338 -6.6625 -0.0499 19 14 7.6276 -6.4805 2.6702 20 1 6.3666 -6.8123 3.3809 21 1 8.4649 -7.7012 2.5519 22 1 8.3682 -5.4443 3.4338 23 16 2.4856 -1.4020 -0.0076 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5143 26 1 -0.3634 0.8902 0.5134 27 1 4.7672 2.3000 -1.0278 28 1 4.0904 2.8794 0.5132 29 1 5.4431 1.7224 0.5144 30 1 5.0436 -2.2370 -1.6590 31 1 5.6127 -0.6146 -2.1196 32 1 6.7437 -1.7810 -1.3931 33 1 4.8620 -1.8566 1.7545 34 1 8.1448 -1.2049 2.9470 35 1 6.9305 -0.1028 2.2543 36 1 6.4352 -1.3548 3.4186 37 1 8.1426 -3.5899 2.3610 38 1 6.4051 -3.7936 2.6898 39 1 7.2712 -7.6129 0.0874 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710017730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:09 Heat of formation + Delta-G solvation = 27.750612 kcal Electronic energy + Delta-G solvation = -18544.819298 eV Core-core repulsion = 15806.645935 eV Total energy + Delta-G solvation = -2738.173363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92039 -37.39264 -34.03982 -32.46178 -31.57304 -29.29520 -28.36567 -27.47392 -26.95750 -23.07127 -22.68740 -21.43472 -19.80908 -18.56142 -17.67314 -16.56896 -15.48631 -15.19437 -15.14855 -14.20073 -13.98661 -13.65585 -13.38883 -13.24897 -12.90550 -12.71243 -12.56318 -12.31268 -12.25109 -12.08812 -11.79224 -11.76311 -11.66542 -11.28022 -11.00875 -10.90777 -10.66995 -10.13524 -9.82053 -9.59224 -9.45809 -9.08869 -8.99858 -8.45939 -8.40470 -7.72492 -5.89163 -3.82819 0.80887 1.49143 1.96703 2.82857 3.37425 3.44815 3.46971 4.10445 4.55827 4.60075 4.91043 4.99766 5.25365 5.27536 5.32446 5.39965 5.45413 5.55915 5.59940 5.65784 5.70923 5.74753 5.83236 5.85809 5.92428 6.09742 6.26923 6.31755 6.41327 6.45894 6.68342 6.81463 7.16998 7.28687 7.75337 7.82078 7.89597 8.02614 8.73864 9.22404 9.74216 11.24830 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.005160 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.722690 B = 5425.252069 C = 5901.074904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.017 3.983 3 N -0.475 5.475 4 C 0.054 3.946 5 C -0.076 4.076 6 C -0.217 4.217 7 C 0.161 3.839 8 H 0.057 0.943 9 C -0.133 4.133 10 N -0.656 5.656 11 C 0.098 3.902 12 H 0.073 0.927 13 C -0.183 4.183 14 C -0.003 4.003 15 C -0.488 4.488 16 H 0.078 0.922 17 C 0.061 3.939 18 N -0.909 5.909 19 Si 0.873 3.127 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.269 1.269 23 S 0.173 5.827 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.332 0.668 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.011 0.989 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 15.313 0.869 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.260 4.260 3 N -0.191 5.191 4 C -0.079 4.079 5 C -0.135 4.135 6 C -0.339 4.339 7 C 0.049 3.951 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.287 5.287 11 C -0.011 4.011 12 H 0.092 0.908 13 C -0.242 4.242 14 C -0.041 4.041 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.138 4.138 18 N -0.549 5.549 19 Si 0.702 3.298 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.194 1.194 23 S 0.430 5.570 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.386 14.046 0.333 16.897 hybrid contribution 0.804 0.940 1.502 1.946 sum -8.582 14.986 1.836 17.366 Atomic orbital electron populations 1.20368 0.85595 1.03863 1.03548 1.26995 1.01733 0.92529 1.04777 1.66121 1.04320 1.32162 1.16534 1.20074 0.90235 0.93895 1.03660 1.20330 0.95871 0.94613 1.02690 1.25971 1.00534 0.95600 1.11747 1.19959 0.87011 0.92580 0.95524 0.92508 1.21808 1.03217 1.00494 0.93643 1.60725 1.07199 1.43328 1.17455 1.21621 0.88184 0.96566 0.94774 0.90844 1.22603 1.02100 0.99205 1.00331 1.19600 0.95592 0.91578 0.97321 1.21038 1.45568 0.90465 0.95540 0.90359 1.25001 0.95622 0.97163 0.96047 1.69910 1.51701 1.02980 1.30358 0.86893 0.78532 0.78378 0.86031 1.20625 1.21744 1.19399 1.84409 0.95995 1.09894 1.66730 0.89939 0.90216 0.89758 0.90878 0.91001 0.90886 0.91584 0.93430 0.91246 0.85010 0.92306 0.94038 0.93062 0.96508 0.97088 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.46 36.00 0.38 -0.29 16 2 C 0.02 0.22 7.39 -13.46 -0.10 0.12 16 3 N -0.48 -6.94 10.53 -8.06 -0.08 -7.03 16 4 C 0.05 0.77 6.74 -84.23 -0.57 0.20 16 5 C -0.08 -0.86 10.02 36.01 0.36 -0.50 16 6 C -0.22 -3.21 5.12 -35.92 -0.18 -3.39 16 7 C 0.16 2.49 2.73 -68.86 -0.19 2.31 16 8 H 0.06 0.82 5.38 -51.93 -0.28 0.54 16 9 C -0.13 -2.16 9.38 37.16 0.35 -1.81 16 10 N -0.66 -11.81 5.67 -100.95 -0.57 -12.38 16 11 C 0.10 1.84 2.34 -67.71 -0.16 1.68 16 12 H 0.07 1.42 7.11 -51.93 -0.37 1.05 16 13 C -0.18 -2.82 9.15 37.16 0.34 -2.48 16 14 C 0.00 -0.07 3.72 -27.88 -0.10 -0.18 16 15 C -0.49 -13.61 9.39 -34.44 -0.32 -13.93 16 16 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 17 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 18 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 19 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 S 0.17 2.45 23.07 -107.50 -2.48 -0.04 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.77 6.61 -51.93 -0.34 0.42 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16 33 H 0.33 5.74 8.09 -39.29 -0.32 5.42 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.56 7.43 -51.93 -0.39 0.18 16 36 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.02 0.39 7.20 -51.92 -0.37 0.02 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -31.58 329.74 -8.60 -40.18 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.24 Total: 1.06 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.30 Total: -16.58 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.12 Total: -46.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.48 Total: -0.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.58 -8.60 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.933 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds