Wall clock time and date at job start Mon Mar 30 2020 07:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29026 * 124.91738 * 2 1 4 4 C 1.31781 * 117.12290 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74804 * 179.97438 * 4 3 2 6 6 C 1.33631 * 114.50486 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.04323 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47122 * 14.99958 * 7 6 4 9 9 C 1.53006 * 109.47184 * 255.00072 * 7 6 4 10 10 N 1.46899 * 109.47365 * 134.99835 * 7 6 4 11 11 C 1.46903 * 110.99807 * 205.00210 * 10 7 6 12 12 H 1.08997 * 109.47215 * 324.99479 * 11 10 7 13 13 C 1.53001 * 109.47293 * 85.00045 * 11 10 7 14 14 C 1.53002 * 109.46765 * 204.99932 * 11 10 7 15 15 C 1.50697 * 109.47417 * 65.00407 * 14 11 10 16 16 H 1.07999 * 119.99917 * 359.97438 * 15 14 11 17 17 C 1.37869 * 120.00277 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00355 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99997 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46943 * 90.00171 * 19 17 15 21 21 H 1.48497 * 109.47418 * 210.00004 * 19 17 15 22 22 H 1.48502 * 109.47102 * 330.00332 * 19 17 15 23 23 S 1.70984 * 124.91583 * 180.31170 * 2 1 3 24 24 H 1.08996 * 109.47156 * 90.02316 * 1 2 3 25 25 H 1.09006 * 109.47302 * 210.02928 * 1 2 3 26 26 H 1.09003 * 109.47183 * 330.02542 * 1 2 3 27 27 H 1.09004 * 109.47706 * 270.00295 * 5 4 3 28 28 H 1.09001 * 109.47386 * 30.00320 * 5 4 3 29 29 H 1.09006 * 109.47004 * 149.99996 * 5 4 3 30 30 H 1.09001 * 109.47002 * 299.99404 * 9 7 6 31 31 H 1.08993 * 109.46955 * 59.99842 * 9 7 6 32 32 H 1.09000 * 109.47050 * 179.97438 * 9 7 6 33 33 H 1.00901 * 110.99898 * 328.95530 * 10 7 6 34 34 H 1.08995 * 109.47229 * 179.97438 * 13 11 10 35 35 H 1.08998 * 109.46899 * 299.99701 * 13 11 10 36 36 H 1.09004 * 109.47059 * 59.99551 * 13 11 10 37 37 H 1.09009 * 109.47057 * 185.00024 * 14 11 10 38 38 H 1.09002 * 109.47270 * 304.99640 * 14 11 10 39 39 H 0.96996 * 120.00110 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4006 0.0004 7 6 5.3574 -0.8995 0.0004 8 1 6.0288 -0.0831 0.2664 9 6 5.7150 -1.4206 -1.3930 10 7 5.4953 -1.9858 0.9797 11 6 6.8832 -2.0997 1.4475 12 1 7.5630 -1.8651 0.6285 13 6 7.1151 -1.1201 2.5996 14 6 7.1423 -3.5276 1.9322 15 6 7.0340 -4.4802 0.7695 16 1 6.8031 -4.1049 -0.2164 17 6 7.2288 -5.8311 0.9647 18 7 7.1338 -6.6625 -0.0499 19 14 7.6276 -6.4805 2.6702 20 1 6.3666 -6.8123 3.3809 21 1 8.4649 -7.7012 2.5519 22 1 8.3682 -5.4443 3.4338 23 16 2.4856 -1.4020 -0.0076 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5143 26 1 -0.3634 0.8902 0.5134 27 1 4.7672 2.3000 -1.0278 28 1 4.0904 2.8794 0.5132 29 1 5.4431 1.7224 0.5144 30 1 5.0436 -2.2370 -1.6590 31 1 5.6127 -0.6146 -2.1196 32 1 6.7437 -1.7810 -1.3931 33 1 4.8620 -1.8566 1.7545 34 1 8.1448 -1.2049 2.9470 35 1 6.9305 -0.1028 2.2543 36 1 6.4352 -1.3548 3.4186 37 1 8.1426 -3.5899 2.3610 38 1 6.4051 -3.7936 2.6898 39 1 7.2712 -7.6129 0.0874 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710017730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:08 Heat of formation + Delta-G solvation = 6.978554 kcal Electronic energy + Delta-G solvation = -18545.720042 eV Core-core repulsion = 15806.645935 eV Total energy + Delta-G solvation = -2739.074107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98751 -38.77642 -35.49949 -34.24663 -32.88117 -30.24468 -30.04049 -28.88625 -28.06155 -24.77660 -23.75893 -22.80449 -21.32604 -19.71196 -18.80955 -18.68211 -16.83598 -16.41657 -16.22596 -16.04122 -15.34980 -14.94531 -14.58470 -14.27743 -14.13776 -14.05383 -13.90971 -13.59154 -13.40507 -13.32712 -13.19739 -13.05210 -12.81714 -12.61017 -12.53003 -12.30302 -12.02659 -11.80595 -11.65380 -11.41516 -11.14073 -10.64064 -10.54170 -10.17878 -9.51123 -9.09156 -8.13480 -6.11389 -0.25193 0.43548 0.90796 1.39370 1.40207 1.50924 1.77772 2.44967 3.14199 3.20161 3.34618 3.74949 4.07434 4.18218 4.19855 4.32244 4.40383 4.47715 4.56440 4.57901 4.66583 4.73204 4.74986 4.80375 4.93162 4.98167 5.03010 5.10482 5.15794 5.19735 5.31260 5.34358 5.40168 5.54320 5.79722 6.31034 6.51164 6.63966 6.78620 6.97030 7.49046 9.03782 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.005160 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.722690 B = 5425.252069 C = 5901.074904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.497 5.497 4 C 0.057 3.943 5 C -0.076 4.076 6 C -0.236 4.236 7 C 0.171 3.829 8 H 0.076 0.924 9 C -0.128 4.128 10 N -0.677 5.677 11 C 0.103 3.897 12 H 0.063 0.937 13 C -0.172 4.172 14 C -0.002 4.002 15 C -0.484 4.484 16 H 0.039 0.961 17 C -0.004 4.004 18 N -0.960 5.960 19 Si 0.942 3.058 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.247 1.247 23 S 0.139 5.861 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.335 0.665 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.012 0.988 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 17.295 2.604 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.244 4.244 3 N -0.213 5.213 4 C -0.075 4.075 5 C -0.135 4.135 6 C -0.357 4.357 7 C 0.060 3.940 8 H 0.093 0.907 9 C -0.186 4.186 10 N -0.308 5.308 11 C -0.007 4.007 12 H 0.081 0.919 13 C -0.231 4.231 14 C -0.040 4.040 15 C -0.523 4.523 16 H 0.058 0.942 17 C -0.199 4.199 18 N -0.603 5.603 19 Si 0.768 3.232 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.171 1.171 23 S 0.395 5.605 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.821 16.057 2.079 18.937 hybrid contribution 0.845 0.375 0.846 1.253 sum -8.976 16.433 2.925 18.951 Atomic orbital electron populations 1.20590 0.82822 1.05192 1.04981 1.27673 1.03182 0.91322 1.02174 1.66236 1.04627 1.32517 1.17960 1.20521 0.90681 0.94364 1.01984 1.20440 0.95549 0.93860 1.03679 1.25796 0.99904 0.95855 1.14141 1.19818 0.88129 0.92153 0.93948 0.90700 1.21748 1.01197 1.00364 0.95324 1.60567 1.06847 1.45339 1.18084 1.21399 0.88595 0.94869 0.95836 0.91862 1.22450 1.02706 0.99171 0.98761 1.19567 0.95665 0.93375 0.95387 1.21323 1.43908 0.91403 0.95638 0.94247 1.25914 0.95976 0.97645 1.00331 1.70083 1.53869 1.03300 1.33006 0.85781 0.78579 0.77987 0.80903 1.20070 1.21781 1.17097 1.84523 0.96997 1.11353 1.67595 0.88305 0.88564 0.88676 0.89743 0.90201 0.89947 0.94257 0.91111 0.93170 0.84590 0.91548 0.91781 0.92550 0.96104 0.96995 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.46 71.23 0.75 -0.44 16 2 C 0.03 0.83 7.39 88.52 0.65 1.48 16 3 N -0.50 -13.61 10.53 -179.41 -1.89 -15.50 16 4 C 0.06 1.52 6.74 41.52 0.28 1.80 16 5 C -0.08 -1.52 10.02 71.24 0.71 -0.81 16 6 C -0.24 -6.75 5.12 24.64 0.13 -6.63 16 7 C 0.17 5.18 2.73 44.17 0.12 5.30 16 8 H 0.08 2.00 5.38 -2.39 -0.01 1.98 16 9 C -0.13 -4.23 9.38 71.98 0.68 -3.55 16 10 N -0.68 -24.17 5.67 -473.29 -2.69 -26.85 16 11 C 0.10 3.76 2.34 44.92 0.11 3.86 16 12 H 0.06 2.43 7.11 -2.39 -0.02 2.41 16 13 C -0.17 -4.79 9.15 71.98 0.66 -4.14 16 14 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 15 C -0.48 -27.63 9.39 25.60 0.24 -27.39 16 16 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 17 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 18 N -0.96 -61.45 13.96 21.44 0.30 -61.15 16 19 Si 0.94 45.23 27.47 68.60 1.88 47.11 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 23 S 0.14 3.88 23.07 -56.49 -1.30 2.58 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.48 6.61 -2.38 -0.02 1.47 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.81 7.43 -2.39 -0.02 1.79 16 33 H 0.34 11.36 8.09 -89.69 -0.73 10.63 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.51 7.43 -2.39 -0.02 1.49 16 36 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 37 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 38 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 39 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -69.32 329.74 1.45 -67.87 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.25 Total: 16.23 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.89 Total: -30.28 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.28 Total: -103.50 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.30 Total: 2.58 kcal Total: -69.32 1.45 -67.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.845 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds