Wall clock time and date at job start Mon Mar 30 2020 07:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29027 * 124.91883 * 2 1 4 4 C 1.31777 * 117.12559 * 179.75357 * 3 2 1 5 5 C 1.50705 * 122.74878 * 180.33432 * 4 3 2 6 6 C 1.33632 * 114.50077 * 0.51961 * 4 3 2 7 7 C 1.50703 * 126.03868 * 179.78846 * 6 4 3 8 8 H 1.09001 * 109.46897 * 344.71994 * 7 6 4 9 9 C 1.52999 * 109.46955 * 104.71852 * 7 6 4 10 10 N 1.46899 * 109.47467 * 224.71956 * 7 6 4 11 11 C 1.46894 * 111.00313 * 154.99663 * 10 7 6 12 12 H 1.08998 * 109.46828 * 35.00794 * 11 10 7 13 13 C 1.52997 * 109.47515 * 275.00230 * 11 10 7 14 14 C 1.53006 * 109.47224 * 154.99921 * 11 10 7 15 15 C 1.50699 * 109.47053 * 295.00581 * 14 11 10 16 16 H 1.08006 * 120.00127 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99929 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00323 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00031 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47314 * 59.99935 * 19 17 15 21 21 H 1.48506 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46996 * 299.99577 * 19 17 15 23 23 S 1.70981 * 124.91497 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46691 * 269.95515 * 1 2 3 25 25 H 1.08997 * 109.46784 * 29.95923 * 1 2 3 26 26 H 1.08999 * 109.46757 * 149.95424 * 1 2 3 27 27 H 1.08989 * 109.47408 * 270.20014 * 5 4 3 28 28 H 1.08998 * 109.47199 * 30.20483 * 5 4 3 29 29 H 1.09000 * 109.46675 * 150.20064 * 5 4 3 30 30 H 1.09001 * 109.46980 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.47248 * 299.99639 * 9 7 6 32 32 H 1.09001 * 109.47202 * 60.00328 * 9 7 6 33 33 H 1.00906 * 110.99722 * 31.04096 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99762 * 13 11 10 35 35 H 1.09001 * 109.46832 * 299.99953 * 13 11 10 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 37 37 H 1.08995 * 109.46750 * 55.00099 * 14 11 10 38 38 H 1.09001 * 109.47326 * 175.00477 * 14 11 10 39 39 H 0.97000 * 120.00334 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0050 5 6 4.5307 2.0245 0.0131 6 6 3.9354 -0.4006 -0.0015 7 6 5.3575 -0.8994 -0.0025 8 1 6.0288 -0.0827 -0.2680 9 6 5.7157 -1.4217 1.3903 10 7 5.4951 -1.9848 -0.9827 11 6 6.8827 -2.0983 -1.4513 12 1 7.5629 -1.8644 -0.6323 13 6 7.1141 -1.1177 -2.6026 14 6 7.1417 -3.5258 -1.9373 15 6 7.0338 -4.4794 -0.7754 16 1 6.8039 -4.1048 0.2112 17 6 7.2286 -5.8301 -0.9718 18 7 7.5090 -6.2863 -2.1730 19 14 7.0956 -7.0121 0.4686 20 1 5.7336 -6.9275 1.0543 21 1 7.3469 -8.3976 -0.0032 22 1 8.1012 -6.6509 1.4998 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3632 -0.0008 1.0277 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 4.7686 2.3064 -1.0125 28 1 4.0898 2.8762 0.5310 29 1 5.4424 1.7192 0.5267 30 1 6.7444 -1.7820 1.3897 31 1 5.6137 -0.6163 2.1177 32 1 5.0444 -2.2383 1.6559 33 1 4.8614 -1.8550 -1.7572 34 1 6.9296 -0.1007 -2.2563 35 1 6.4339 -1.3517 -3.4215 36 1 8.1440 -1.2016 -2.9499 37 1 6.4042 -3.7911 -2.6947 38 1 8.1418 -3.5877 -2.3665 39 1 7.6464 -7.2366 -2.3110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710017736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:12 Heat of formation + Delta-G solvation = 4.033139 kcal Electronic energy + Delta-G solvation = -18532.334548 eV Core-core repulsion = 15793.132719 eV Total energy + Delta-G solvation = -2739.201830 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97784 -38.73328 -35.51077 -34.23165 -32.78183 -30.15118 -29.66346 -28.78812 -28.05190 -25.09767 -23.76651 -22.84923 -21.32094 -19.71705 -18.74820 -18.34449 -16.75458 -16.44901 -16.23884 -16.15712 -15.30567 -14.81154 -14.47354 -14.31582 -14.14740 -14.03658 -13.61131 -13.55374 -13.33914 -13.19786 -13.13337 -13.04282 -12.79227 -12.65243 -12.47510 -12.37983 -12.22961 -11.99911 -11.78844 -11.15653 -11.08350 -10.54316 -10.44876 -10.16703 -9.49271 -9.09158 -8.06514 -6.10454 -0.24461 0.44170 0.90991 1.42561 1.45030 1.52130 1.78193 2.49274 3.16608 3.24542 3.36346 3.76442 4.08515 4.20864 4.24723 4.38148 4.42833 4.49529 4.57687 4.58183 4.66847 4.74252 4.77485 4.79731 4.94726 4.99919 5.05688 5.10763 5.23048 5.25284 5.36580 5.40359 5.54821 5.70143 5.93016 6.32716 6.46711 6.62306 6.79495 7.03429 7.54854 9.05615 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.005324 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.753583 B = 5258.036090 C = 5874.257490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.032 3.968 3 N -0.498 5.498 4 C 0.056 3.944 5 C -0.077 4.077 6 C -0.235 4.235 7 C 0.167 3.833 8 H 0.072 0.928 9 C -0.131 4.131 10 N -0.672 5.672 11 C 0.100 3.900 12 H 0.067 0.933 13 C -0.170 4.170 14 C 0.039 3.961 15 C -0.493 4.493 16 H 0.060 0.940 17 C -0.006 4.006 18 N -0.942 5.942 19 Si 0.952 3.048 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.270 1.270 23 S 0.142 5.858 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.333 0.667 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.059 0.941 37 H -0.012 1.012 38 H -0.007 1.007 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 15.689 5.288 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.245 4.245 3 N -0.214 5.214 4 C -0.077 4.077 5 C -0.136 4.136 6 C -0.356 4.356 7 C 0.056 3.944 8 H 0.090 0.910 9 C -0.189 4.189 10 N -0.303 5.303 11 C -0.009 4.009 12 H 0.085 0.915 13 C -0.229 4.229 14 C 0.002 3.998 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.202 4.202 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.195 1.195 23 S 0.398 5.602 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.006 0.994 38 H 0.011 0.989 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.096 14.461 5.691 19.095 hybrid contribution 0.752 0.296 -0.259 0.849 sum -10.343 14.757 5.432 18.822 Atomic orbital electron populations 1.20587 0.82856 1.05133 1.05000 1.27665 1.03182 0.91357 1.02295 1.66225 1.04666 1.32582 1.17940 1.20519 0.90658 0.94414 1.02111 1.20430 0.95725 0.93952 1.03480 1.25827 0.99997 0.95835 1.13947 1.19862 0.88010 0.92243 0.94306 0.91038 1.21791 1.01586 1.00704 0.94837 1.60630 1.06632 1.45012 1.18023 1.21507 0.88606 0.95238 0.95562 0.91492 1.22425 1.02156 0.99332 0.99018 1.18970 0.93992 0.91677 0.95164 1.21462 1.44213 0.91834 0.95663 0.92205 1.25827 0.96049 1.00438 0.97844 1.70088 1.51311 1.14050 1.22977 0.85698 0.78711 0.77805 0.79955 1.19845 1.21484 1.19468 1.84437 0.96883 1.11292 1.67547 0.88207 0.88807 0.88597 0.90144 0.90119 0.89732 0.92598 0.91072 0.93592 0.84913 0.91618 0.93336 0.92235 0.99409 0.98917 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.46 71.24 0.75 -0.42 16 2 C 0.03 0.78 7.39 88.52 0.65 1.43 16 3 N -0.50 -13.58 10.53 -179.40 -1.89 -15.46 16 4 C 0.06 1.47 6.74 41.52 0.28 1.75 16 5 C -0.08 -1.55 9.81 71.24 0.70 -0.85 16 6 C -0.23 -6.61 5.12 24.64 0.13 -6.49 16 7 C 0.17 4.95 2.59 44.17 0.11 5.06 16 8 H 0.07 1.91 5.76 -2.39 -0.01 1.90 16 9 C -0.13 -3.93 9.38 71.98 0.68 -3.25 16 10 N -0.67 -24.32 5.67 -473.32 -2.68 -27.01 16 11 C 0.10 3.91 2.34 44.92 0.11 4.02 16 12 H 0.07 2.61 7.11 -2.39 -0.02 2.59 16 13 C -0.17 -5.43 9.15 71.98 0.66 -4.77 16 14 C 0.04 2.03 4.65 29.85 0.14 2.17 16 15 C -0.49 -27.71 8.84 25.60 0.23 -27.48 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 19 Si 0.95 45.51 29.54 68.60 2.03 47.54 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 S 0.14 3.86 23.06 -56.49 -1.30 2.55 16 24 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.51 7.04 -2.39 -0.02 1.50 16 30 H 0.05 1.79 7.43 -2.39 -0.02 1.77 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.33 11.90 8.08 -89.69 -0.72 11.18 16 34 H 0.06 1.73 7.43 -2.39 -0.02 1.71 16 35 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -66.79 333.77 1.63 -65.17 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.31 Total: 13.74 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.88 Total: -28.71 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -4.29 Total: -100.29 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.30 Total: 2.55 kcal Total: -66.79 1.63 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.199 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds