Wall clock time and date at job start Mon Mar 30 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86800 * 119.99745 * 2 1 4 4 H 1.48505 * 109.47319 * 179.72568 * 3 2 1 5 5 H 1.48504 * 109.47287 * 299.72320 * 3 2 1 6 6 H 1.48505 * 109.47472 * 59.72494 * 3 2 1 7 7 C 1.39891 * 120.00350 * 179.72096 * 2 1 3 8 8 H 1.07999 * 119.99694 * 164.82806 * 7 2 1 9 9 C 1.41021 * 119.99684 * 344.82844 * 7 2 1 10 10 C 1.40666 * 120.26925 * 334.26232 * 9 7 2 11 11 C 1.38006 * 119.76591 * 179.74272 * 10 9 7 12 12 N 1.39860 * 119.83875 * 180.25184 * 11 10 9 13 13 C 1.46499 * 120.00156 * 180.25965 * 12 11 10 14 14 C 1.52997 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.09006 * 115.55255 * 29.41305 * 14 13 12 16 16 C 1.53002 * 117.50101 * 175.08736 * 14 13 12 17 17 C 1.53003 * 117.49612 * 243.74817 * 14 13 12 18 18 F 1.39894 * 117.50069 * 359.97438 * 17 14 13 19 19 F 1.39900 * 117.50010 * 145.02051 * 17 14 13 20 20 C 1.39598 * 120.32341 * 0.51552 * 11 10 9 21 21 C 1.38055 * 120.55215 * 359.76333 * 20 11 10 22 22 C 1.38744 * 120.21782 * 359.97438 * 21 20 11 23 23 N 1.38863 * 120.16142 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00188 * 0.27365 * 1 2 3 25 25 H 1.07993 * 120.11264 * 359.97438 * 10 9 7 26 26 H 0.96998 * 119.99350 * 0.26128 * 12 11 10 27 27 H 1.08999 * 109.47065 * 300.00085 * 13 12 11 28 28 H 1.08998 * 109.46784 * 60.00330 * 13 12 11 29 29 H 1.08993 * 117.50297 * 214.97519 * 16 14 13 30 30 H 1.08995 * 117.49261 * 359.97438 * 16 14 13 31 31 H 1.08009 * 119.72618 * 179.73704 * 20 11 10 32 32 H 1.07994 * 119.89128 * 179.97438 * 21 20 11 33 33 H 0.97003 * 119.99708 * 179.97438 * 23 22 21 34 34 H 0.96997 * 120.00002 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3465 0.0067 5 1 1.8892 2.3936 -1.2159 6 1 1.8791 2.3995 1.2091 7 6 2.0085 -1.2114 0.0059 8 1 3.0602 -1.2288 -0.2388 9 6 1.3402 -2.4099 0.3314 10 6 0.1926 -2.3835 1.1443 11 6 -0.4563 -3.5620 1.4520 12 7 -1.6006 -3.5370 2.2558 13 6 -2.2889 -4.7865 2.5893 14 6 -3.5003 -4.4813 3.4726 15 1 -3.9610 -3.5055 3.3181 16 6 -4.4214 -5.6476 3.8362 17 6 -3.4965 -5.0433 4.8957 18 9 -2.3858 -5.7973 5.2894 19 9 -4.0849 -4.2657 5.8989 20 6 0.0270 -4.7795 0.9693 21 6 1.1555 -4.8213 0.1752 22 6 1.8225 -3.6497 -0.1526 23 7 2.9572 -3.6931 -0.9519 24 1 -0.4850 0.8400 -0.0040 25 1 -0.1815 -1.4440 1.5233 26 1 -1.9383 -2.6923 2.5924 27 1 -2.6215 -5.2738 1.6728 28 1 -1.6057 -5.4460 3.1243 29 1 -5.4878 -5.4392 3.9212 30 1 -4.1645 -6.6323 3.4457 31 1 -0.4860 -5.6964 1.2196 32 1 1.5203 -5.7691 -0.1921 33 1 3.4215 -2.8725 -1.1799 34 1 3.2855 -4.5440 -1.2822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717302855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:24 Heat of formation + Delta-G solvation = -63.526766 kcal Electronic energy + Delta-G solvation = -19641.014279 eV Core-core repulsion = 16209.209351 eV Total energy + Delta-G solvation = -3431.804928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.67544 -48.37662 -39.79139 -38.20030 -36.16610 -35.31692 -33.18000 -31.29102 -29.19985 -26.84031 -26.06088 -23.54882 -23.20686 -21.86980 -21.47397 -19.05348 -18.73532 -18.08695 -17.46113 -17.23429 -16.96418 -16.58204 -16.30521 -15.89789 -15.12961 -14.90737 -14.68604 -14.56053 -14.50950 -14.17556 -14.03841 -13.66464 -13.55686 -13.13253 -12.90952 -12.70432 -12.49308 -12.12194 -12.04129 -11.76112 -11.43372 -11.16098 -10.93963 -10.81201 -9.41835 -9.13520 -8.48969 -7.31304 -5.99993 1.12137 1.41901 1.50897 1.55054 1.65075 2.05387 2.12530 2.27671 2.75137 2.93320 3.33898 3.52401 3.63357 3.78585 3.97557 4.08135 4.42345 4.61040 4.63583 4.72302 4.83748 4.85782 4.98488 5.24493 5.34595 5.43750 5.66734 5.88446 6.06978 6.17164 6.27173 6.57168 6.97401 7.05447 7.12635 7.23156 7.47299 7.67836 8.51661 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.004654 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.365650 B = 6014.465720 C = 6948.338315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.059 3.941 10 C -0.225 4.225 11 C 0.171 3.829 12 N -0.760 5.760 13 C 0.163 3.837 14 C -0.161 4.161 15 H 0.141 0.859 16 C -0.125 4.125 17 C 0.164 3.836 18 F -0.174 7.174 19 F -0.173 7.173 20 C -0.257 4.257 21 C -0.158 4.158 22 C 0.070 3.930 23 N -0.879 5.879 24 H 0.279 0.721 25 H 0.099 0.901 26 H 0.391 0.609 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.390 0.610 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -7.742 4.753 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.054 3.946 10 C -0.250 4.250 11 C 0.071 3.929 12 N -0.395 5.395 13 C 0.039 3.961 14 C -0.180 4.180 15 H 0.158 0.842 16 C -0.163 4.163 17 C 0.128 3.872 18 F -0.154 7.154 19 F -0.154 7.154 20 C -0.281 4.281 21 C -0.182 4.182 22 C -0.033 4.033 23 N -0.423 5.423 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.224 0.776 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.218 0.782 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.956 -7.787 4.846 12.142 hybrid contribution 0.655 1.274 0.209 1.448 sum -7.301 -6.513 5.055 11.012 Atomic orbital electron populations 1.69955 1.08640 1.29299 1.38189 1.26554 0.95444 1.03838 0.92122 0.85277 0.79510 0.77218 0.78324 1.18256 1.19612 1.19778 1.19427 0.96884 0.92038 1.43918 0.90825 1.17373 0.93538 0.91575 0.92141 1.20501 1.01988 0.95420 1.07081 1.17595 0.88179 0.93745 0.93379 1.44344 1.29486 1.07577 1.58089 1.20648 0.90862 0.87346 0.97252 1.23869 0.99966 1.02530 0.91634 0.84169 1.24548 0.99508 0.99539 0.92664 1.20584 0.88298 0.95803 0.82563 1.92979 1.54078 1.76040 1.92350 1.92990 1.83233 1.75315 1.63859 1.19948 1.02373 0.94947 1.10852 1.20064 0.98469 0.95363 1.04350 1.18062 0.92670 0.93706 0.98813 1.41688 1.30714 1.10097 1.59785 0.91072 0.88295 0.77603 0.90920 0.92979 0.82947 0.83913 0.87240 0.86988 0.78225 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.54 10.88 21.82 0.24 -44.30 16 2 C 0.03 1.69 5.18 85.23 0.44 2.13 16 3 Si 0.97 39.34 29.59 68.60 2.03 41.37 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.49 -26.42 8.50 23.35 0.20 -26.22 16 8 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 9 C 0.06 3.20 5.58 -21.18 -0.12 3.09 16 10 C -0.23 -12.05 8.50 22.81 0.19 -11.85 16 11 C 0.17 7.98 6.64 38.13 0.25 8.24 16 12 N -0.76 -28.57 5.74 -339.44 -1.95 -30.52 16 13 C 0.16 4.66 5.17 86.38 0.45 5.10 16 14 C -0.16 -3.45 5.83 -10.79 -0.06 -3.51 16 15 H 0.14 2.82 8.04 -2.38 -0.02 2.80 16 16 C -0.12 -1.78 10.23 30.62 0.31 -1.47 16 17 C 0.16 3.78 5.20 30.62 0.16 3.94 16 18 F -0.17 -4.85 16.48 44.97 0.74 -4.11 16 19 F -0.17 -4.40 17.60 44.97 0.79 -3.61 16 20 C -0.26 -11.36 9.31 22.55 0.21 -11.15 16 21 C -0.16 -7.06 9.86 22.35 0.22 -6.84 16 22 C 0.07 3.37 6.79 38.97 0.26 3.64 16 23 N -0.88 -35.45 8.98 -50.30 -0.45 -35.90 16 24 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 25 H 0.10 5.59 6.15 -2.91 -0.02 5.57 16 26 H 0.39 14.23 8.41 -92.71 -0.78 13.45 16 27 H 0.07 1.96 7.94 -2.39 -0.02 1.94 16 28 H 0.05 1.59 6.86 -2.39 -0.02 1.57 16 29 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 4.20 6.69 -2.91 -0.02 4.18 16 32 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.39 15.59 7.04 -92.71 -0.65 14.94 16 34 H 0.39 12.94 8.83 -92.71 -0.82 12.12 16 Total: -1.00 -63.90 296.64 2.85 -61.05 By element: Atomic # 1 Polarization: 52.00 SS G_CDS: -1.07 Total: 50.93 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 2.52 Total: -34.91 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -2.16 Total: -110.73 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 1.53 Total: -7.71 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -63.90 2.85 -61.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717302855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds