Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86803 * 119.99414 * 2 1 4 4 H 1.48501 * 109.47140 * 270.00037 * 3 2 1 5 5 H 1.48496 * 109.47498 * 30.00332 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00158 * 3 2 1 7 7 C 1.39882 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 195.35104 * 7 2 1 9 9 C 1.41031 * 119.99902 * 15.35646 * 7 2 1 10 10 C 1.40667 * 120.26493 * 25.55922 * 9 7 2 11 11 C 1.38007 * 119.76699 * 180.02562 * 10 9 7 12 12 N 1.39852 * 119.83625 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99750 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47234 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.54575 * 29.41834 * 14 13 12 16 16 C 1.52997 * 117.52122 * 243.72351 * 14 13 12 17 17 C 1.52993 * 117.50146 * 175.08610 * 14 13 12 18 18 F 1.39895 * 117.50171 * 215.00360 * 17 14 13 19 19 F 1.39904 * 117.49747 * 0.02562 * 17 14 13 20 20 C 1.39602 * 120.31990 * 0.27653 * 11 10 9 21 21 C 1.38055 * 120.54881 * 359.44200 * 20 11 10 22 22 C 1.38732 * 120.22169 * 0.55789 * 21 20 11 23 23 N 1.38863 * 120.16445 * 179.74985 * 22 21 20 24 24 H 0.96996 * 120.00643 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.11520 * 0.02562 * 10 9 7 26 26 H 0.96994 * 120.00279 * 0.02562 * 12 11 10 27 27 H 1.09002 * 109.47006 * 60.00107 * 13 12 11 28 28 H 1.08993 * 109.47015 * 300.00438 * 13 12 11 29 29 H 1.09005 * 117.50058 * 359.97438 * 16 14 13 30 30 H 1.08996 * 117.50183 * 145.03294 * 16 14 13 31 31 H 1.08004 * 119.72069 * 179.72409 * 20 11 10 32 32 H 1.08004 * 119.89175 * 180.27792 * 21 20 11 33 33 H 0.97005 * 120.00409 * 179.97438 * 23 22 21 34 34 H 0.97003 * 120.00237 * 359.96360 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4404 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0596 -1.2278 0.2482 9 6 1.3412 -2.4111 -0.3224 10 6 0.1937 -2.3874 -1.1356 11 6 -0.4516 -3.5675 -1.4447 12 7 -1.5923 -3.5456 -2.2535 13 6 -2.2797 -4.7964 -2.5843 14 6 -3.4872 -4.4948 -3.4742 15 1 -3.3936 -3.6152 -4.1112 16 6 -4.8747 -4.8190 -2.9169 17 6 -4.2736 -5.6857 -4.0253 18 9 -4.8178 -5.5626 -5.3082 19 9 -3.8339 -6.9673 -3.6766 20 6 0.0259 -4.7824 -0.9496 21 6 1.1542 -4.8215 -0.1552 22 6 1.8205 -3.6489 0.1698 23 7 2.9524 -3.6891 0.9732 24 1 -0.4851 0.8400 0.0004 25 1 -0.1811 -1.4489 -1.5166 26 1 -1.9279 -2.7025 -2.5960 27 1 -2.6165 -5.2795 -1.6671 28 1 -1.5944 -5.4586 -3.1133 29 1 -4.9275 -5.2478 -1.9161 30 1 -5.6939 -4.1529 -3.1873 31 1 -0.4893 -5.6997 -1.1940 32 1 1.5169 -5.7678 0.2184 33 1 3.4167 -2.8678 1.1987 34 1 3.2787 -4.5386 1.3093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717302856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = -45.868236 kcal Electronic energy + Delta-G solvation = -19548.910093 eV Core-core repulsion = 16117.870896 eV Total energy + Delta-G solvation = -3431.039197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.73746 -47.41740 -38.13500 -37.03306 -34.67863 -33.47401 -31.59370 -29.42818 -27.66280 -25.07783 -24.54701 -22.66648 -21.66560 -20.60560 -19.73722 -17.89489 -17.21557 -16.67526 -16.08310 -15.82717 -15.47705 -14.83765 -14.73190 -14.49313 -14.20515 -14.00165 -13.65163 -13.32341 -13.20108 -12.72397 -12.40610 -11.95838 -11.84989 -11.55312 -11.34287 -11.17282 -11.03720 -10.89349 -10.39086 -10.15054 -9.82229 -9.74142 -9.35280 -9.08242 -7.81453 -7.24627 -6.62745 -5.58444 -4.08803 2.88654 2.89406 2.97215 3.12545 3.14950 3.29285 3.45122 4.00004 4.01949 4.22887 4.43162 4.71367 4.80297 5.04462 5.33175 5.41285 5.47188 5.60922 5.82458 5.98093 6.06191 6.34599 6.60721 7.07608 7.12321 7.29997 7.45261 7.65763 7.85489 7.96829 8.08898 8.43211 8.70138 8.84532 8.91045 8.97551 9.24032 9.31764 10.35724 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.004352 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.727868 B = 6432.521548 C = 7396.946669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.094 3.906 10 C -0.199 4.199 11 C 0.174 3.826 12 N -0.760 5.760 13 C 0.168 3.832 14 C -0.153 4.153 15 H 0.133 0.867 16 C -0.170 4.170 17 C 0.195 3.805 18 F -0.164 7.164 19 F -0.159 7.159 20 C -0.254 4.254 21 C -0.153 4.153 22 C 0.087 3.913 23 N -0.889 5.889 24 H 0.275 0.725 25 H 0.120 0.880 26 H 0.389 0.611 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.389 0.611 34 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -5.336 -4.549 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.223 4.223 11 C 0.076 3.924 12 N -0.397 5.397 13 C 0.042 3.958 14 C -0.172 4.172 15 H 0.151 0.849 16 C -0.207 4.207 17 C 0.158 3.842 18 F -0.144 7.144 19 F -0.139 7.139 20 C -0.278 4.278 21 C -0.177 4.177 22 C -0.014 4.014 23 N -0.431 5.431 24 H 0.085 0.915 25 H 0.138 0.862 26 H 0.223 0.777 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.217 0.783 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.093 -5.386 -4.608 10.028 hybrid contribution 0.372 0.855 -0.063 0.935 sum -6.721 -4.531 -4.672 9.355 Atomic orbital electron populations 1.69869 1.07241 1.28347 1.37368 1.25743 0.94682 1.00684 0.92846 0.86410 0.80376 0.81345 0.79036 1.19612 1.20613 1.18954 1.19152 0.96662 0.91031 1.42585 0.91066 1.16975 0.92655 0.90289 0.91197 1.20523 1.00992 0.95103 1.05717 1.17480 0.87326 0.94265 0.93293 1.44201 1.30694 1.05861 1.58908 1.20495 0.90178 0.89010 0.96072 1.23940 0.94489 0.97629 1.01150 0.84887 1.24473 0.97827 1.00073 0.98350 1.20061 1.03657 0.79619 0.80898 1.93015 1.86195 1.95731 1.39496 1.93028 1.89794 1.39806 1.91297 1.19625 1.02400 0.94445 1.11353 1.19705 0.98636 0.94662 1.04736 1.17875 0.91610 0.93906 0.98032 1.41820 1.32020 1.09184 1.60103 0.91457 0.86214 0.77716 0.92430 0.92240 0.85738 0.86033 0.89693 0.89702 0.78318 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.64 10.88 55.54 0.60 -20.04 16 2 C 0.08 1.90 5.18 -17.33 -0.09 1.81 16 3 Si 0.90 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.04 8.50 -37.91 -0.32 -12.37 16 8 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 9 C 0.09 2.47 5.58 -106.66 -0.60 1.88 16 10 C -0.20 -5.09 8.50 -38.75 -0.33 -5.42 16 11 C 0.17 3.99 6.64 -83.77 -0.56 3.43 16 12 N -0.76 -14.00 5.74 -58.64 -0.34 -14.33 16 13 C 0.17 2.53 4.83 -4.04 -0.02 2.51 16 14 C -0.15 -1.80 5.83 -90.63 -0.53 -2.32 16 15 H 0.13 1.43 8.04 -51.93 -0.42 1.01 16 16 C -0.17 -1.65 10.15 -26.73 -0.27 -1.92 16 17 C 0.19 2.31 5.20 -26.73 -0.14 2.17 16 18 F -0.16 -2.05 17.60 2.25 0.04 -2.02 16 19 F -0.16 -2.12 17.14 2.25 0.04 -2.08 16 20 C -0.25 -5.74 9.31 -39.14 -0.36 -6.10 16 21 C -0.15 -3.50 9.86 -39.47 -0.39 -3.88 16 22 C 0.09 2.09 6.79 -83.23 -0.56 1.53 16 23 N -0.89 -18.09 8.98 32.75 0.29 -17.80 16 24 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 25 H 0.12 3.17 6.14 -52.49 -0.32 2.84 16 26 H 0.39 6.70 8.41 -40.82 -0.34 6.35 16 27 H 0.06 0.88 7.66 -51.93 -0.40 0.49 16 28 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 29 H 0.12 1.14 8.03 -51.93 -0.42 0.72 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.74 6.69 -52.48 -0.35 1.39 16 32 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.39 7.76 7.04 -40.82 -0.29 7.47 16 34 H 0.37 6.44 8.83 -40.82 -0.36 6.08 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -28.30 297.59 -7.71 -36.02 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -3.64 Total: 20.73 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -4.17 Total: -18.68 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.56 Total: -52.17 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.08 Total: -4.09 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.30 -7.71 -36.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717302856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.850 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds