Wall clock time and date at job start Mon Mar 30 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86803 * 119.99414 * 2 1 4 4 H 1.48501 * 109.47140 * 270.00037 * 3 2 1 5 5 H 1.48496 * 109.47498 * 30.00332 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00158 * 3 2 1 7 7 C 1.39882 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 195.35104 * 7 2 1 9 9 C 1.41031 * 119.99902 * 15.35646 * 7 2 1 10 10 C 1.40667 * 120.26493 * 25.55922 * 9 7 2 11 11 C 1.38007 * 119.76699 * 180.02562 * 10 9 7 12 12 N 1.39852 * 119.83625 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99750 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47234 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.54575 * 29.41834 * 14 13 12 16 16 C 1.52997 * 117.52122 * 243.72351 * 14 13 12 17 17 C 1.52993 * 117.50146 * 175.08610 * 14 13 12 18 18 F 1.39895 * 117.50171 * 215.00360 * 17 14 13 19 19 F 1.39904 * 117.49747 * 0.02562 * 17 14 13 20 20 C 1.39602 * 120.31990 * 0.27653 * 11 10 9 21 21 C 1.38055 * 120.54881 * 359.44200 * 20 11 10 22 22 C 1.38732 * 120.22169 * 0.55789 * 21 20 11 23 23 N 1.38863 * 120.16445 * 179.74985 * 22 21 20 24 24 H 0.96996 * 120.00643 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.11520 * 0.02562 * 10 9 7 26 26 H 0.96994 * 120.00279 * 0.02562 * 12 11 10 27 27 H 1.09002 * 109.47006 * 60.00107 * 13 12 11 28 28 H 1.08993 * 109.47015 * 300.00438 * 13 12 11 29 29 H 1.09005 * 117.50058 * 359.97438 * 16 14 13 30 30 H 1.08996 * 117.50183 * 145.03294 * 16 14 13 31 31 H 1.08004 * 119.72069 * 179.72409 * 20 11 10 32 32 H 1.08004 * 119.89175 * 180.27792 * 21 20 11 33 33 H 0.97005 * 120.00409 * 179.97438 * 23 22 21 34 34 H 0.97003 * 120.00237 * 359.96360 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4404 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0596 -1.2278 0.2482 9 6 1.3412 -2.4111 -0.3224 10 6 0.1937 -2.3874 -1.1356 11 6 -0.4516 -3.5675 -1.4447 12 7 -1.5923 -3.5456 -2.2535 13 6 -2.2797 -4.7964 -2.5843 14 6 -3.4872 -4.4948 -3.4742 15 1 -3.3936 -3.6152 -4.1112 16 6 -4.8747 -4.8190 -2.9169 17 6 -4.2736 -5.6857 -4.0253 18 9 -4.8178 -5.5626 -5.3082 19 9 -3.8339 -6.9673 -3.6766 20 6 0.0259 -4.7824 -0.9496 21 6 1.1542 -4.8215 -0.1552 22 6 1.8205 -3.6489 0.1698 23 7 2.9524 -3.6891 0.9732 24 1 -0.4851 0.8400 0.0004 25 1 -0.1811 -1.4489 -1.5166 26 1 -1.9279 -2.7025 -2.5960 27 1 -2.6165 -5.2795 -1.6671 28 1 -1.5944 -5.4586 -3.1133 29 1 -4.9275 -5.2478 -1.9161 30 1 -5.6939 -4.1529 -3.1873 31 1 -0.4893 -5.6997 -1.1940 32 1 1.5169 -5.7678 0.2184 33 1 3.4167 -2.8678 1.1987 34 1 3.2787 -4.5386 1.3093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717302856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:27 Heat of formation + Delta-G solvation = -62.776949 kcal Electronic energy + Delta-G solvation = -19549.643310 eV Core-core repulsion = 16117.870896 eV Total energy + Delta-G solvation = -3431.772414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.69386 -48.38522 -39.79929 -38.23793 -36.15615 -35.31110 -33.17299 -31.28611 -29.20473 -26.83792 -26.09357 -23.55129 -23.22162 -21.90567 -21.47676 -19.07474 -18.73558 -18.02959 -17.40628 -17.23079 -16.97053 -16.46889 -16.25297 -15.82713 -15.50361 -15.03217 -14.64838 -14.62984 -14.34908 -14.19118 -14.05170 -13.71026 -13.53125 -13.13796 -12.86929 -12.70824 -12.54155 -12.13784 -11.98763 -11.77570 -11.30360 -11.17755 -10.93602 -10.91259 -9.42340 -9.13230 -8.47965 -7.31318 -5.99480 1.13281 1.43231 1.52216 1.54006 1.66142 1.93032 2.10516 2.28727 2.88346 2.93871 3.33480 3.36633 3.64279 3.78529 3.97654 4.04854 4.41752 4.60901 4.63981 4.70028 4.82624 4.84692 4.95068 5.25188 5.34407 5.44161 5.67418 5.88478 6.07084 6.17740 6.26946 6.57613 6.97936 7.05305 7.12744 7.25410 7.47800 7.67531 8.52458 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.004352 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.727868 B = 6432.521548 C = 7396.946669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.073 0.927 9 C 0.060 3.940 10 C -0.223 4.223 11 C 0.172 3.828 12 N -0.755 5.755 13 C 0.169 3.831 14 C -0.159 4.159 15 H 0.144 0.856 16 C -0.143 4.143 17 C 0.184 3.816 18 F -0.169 7.169 19 F -0.170 7.170 20 C -0.259 4.259 21 C -0.159 4.159 22 C 0.070 3.930 23 N -0.879 5.879 24 H 0.280 0.720 25 H 0.102 0.898 26 H 0.394 0.606 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.390 0.610 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -5.485 -4.550 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.054 3.946 10 C -0.248 4.248 11 C 0.072 3.928 12 N -0.390 5.390 13 C 0.044 3.956 14 C -0.178 4.178 15 H 0.162 0.838 16 C -0.180 4.180 17 C 0.147 3.853 18 F -0.149 7.149 19 F -0.151 7.151 20 C -0.283 4.283 21 C -0.183 4.183 22 C -0.032 4.032 23 N -0.423 5.423 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.228 0.772 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.218 0.782 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.669 -5.567 -4.614 10.540 hybrid contribution 0.505 0.784 -0.093 0.938 sum -7.163 -4.782 -4.707 9.816 Atomic orbital electron populations 1.69944 1.08600 1.29407 1.38053 1.26531 0.95435 1.03763 0.92090 0.85326 0.79116 0.76942 0.78973 1.19412 1.19966 1.18324 1.19407 0.96966 0.91973 1.43964 0.90847 1.17372 0.93553 0.91502 0.92133 1.20506 1.01940 0.95389 1.06973 1.17568 0.88240 0.93645 0.93334 1.44235 1.29575 1.07460 1.57760 1.20534 0.91075 0.87307 0.96662 1.23819 0.94407 0.98149 1.01430 0.83843 1.24631 0.96900 0.98630 0.97890 1.20267 1.04515 0.79083 0.81438 1.93004 1.86200 1.95698 1.40031 1.93002 1.90063 1.40649 1.91380 1.19938 1.02440 0.95059 1.10879 1.20049 0.98522 0.95351 1.04415 1.18055 0.92737 0.93714 0.98664 1.41698 1.31021 1.10174 1.59416 0.91004 0.87982 0.77196 0.92349 0.93057 0.84815 0.83421 0.87620 0.87189 0.78200 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.71 10.88 21.82 0.24 -43.47 16 2 C 0.03 1.74 5.18 85.23 0.44 2.18 16 3 Si 0.97 38.63 29.59 68.60 2.03 40.66 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.49 -26.06 8.50 23.35 0.20 -25.86 16 8 H 0.07 3.69 6.67 -2.91 -0.02 3.67 16 9 C 0.06 3.19 5.58 -21.18 -0.12 3.08 16 10 C -0.22 -11.70 8.50 22.81 0.19 -11.51 16 11 C 0.17 7.89 6.64 38.14 0.25 8.14 16 12 N -0.76 -27.38 5.74 -339.43 -1.95 -29.33 16 13 C 0.17 4.87 4.83 86.38 0.42 5.29 16 14 C -0.16 -3.43 5.83 -10.80 -0.06 -3.49 16 15 H 0.14 2.81 8.04 -2.39 -0.02 2.79 16 16 C -0.14 -2.36 10.15 30.60 0.31 -2.05 16 17 C 0.18 4.01 5.20 30.59 0.16 4.17 16 18 F -0.17 -3.95 17.60 44.97 0.79 -3.16 16 19 F -0.17 -4.32 17.14 44.97 0.77 -3.54 16 20 C -0.26 -11.45 9.31 22.56 0.21 -11.24 16 21 C -0.16 -7.10 9.86 22.34 0.22 -6.88 16 22 C 0.07 3.39 6.79 38.97 0.26 3.65 16 23 N -0.88 -35.27 8.98 -50.31 -0.45 -35.72 16 24 H 0.28 13.44 8.30 -92.71 -0.77 12.67 16 25 H 0.10 5.60 6.14 -2.91 -0.02 5.59 16 26 H 0.39 13.43 8.41 -92.71 -0.78 12.65 16 27 H 0.06 1.69 7.66 -2.39 -0.02 1.67 16 28 H 0.05 1.57 7.95 -2.39 -0.02 1.55 16 29 H 0.13 2.02 8.03 -2.38 -0.02 2.00 16 30 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.11 4.15 6.69 -2.91 -0.02 4.13 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.39 15.48 7.04 -92.70 -0.65 14.83 16 34 H 0.39 12.91 8.83 -92.71 -0.82 12.09 16 Total: -1.00 -61.18 297.59 2.84 -58.34 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -1.07 Total: 50.74 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 2.49 Total: -34.51 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -2.16 Total: -108.53 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 1.56 Total: -6.70 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -61.18 2.84 -58.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717302856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.436 kcal (2) G-P(sol) polarization free energy of solvation -61.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds