Wall clock time and date at job start Mon Mar 30 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31774 * 122.74945 * 2 1 4 4 C 1.29031 * 117.12862 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91823 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00063 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46897 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.08011 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00400 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00233 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99860 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47154 * 90.00205 * 15 13 11 17 17 H 1.48501 * 109.47128 * 210.00005 * 15 13 11 18 18 H 1.48494 * 109.47287 * 329.99529 * 15 13 11 19 19 S 1.70978 * 110.16257 * 0.22643 * 4 3 2 20 20 C 1.33635 * 122.74910 * 180.02562 * 2 1 3 21 21 C 1.50699 * 126.04247 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.46948 * 89.98186 * 1 2 3 23 23 H 1.08997 * 109.47007 * 209.97936 * 1 2 3 24 24 H 1.08989 * 109.47366 * 329.97882 * 1 2 3 25 25 H 1.09001 * 109.47558 * 330.00227 * 5 4 3 26 26 H 1.08998 * 109.47216 * 209.99889 * 5 4 3 27 27 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 28 28 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 29 29 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 30 30 H 1.08995 * 109.46615 * 299.99641 * 8 7 6 31 31 H 1.08996 * 109.46939 * 60.00272 * 8 7 6 32 32 H 1.08993 * 109.47740 * 299.99810 * 9 8 7 33 33 H 1.09005 * 109.47573 * 59.99976 * 9 8 7 34 34 H 1.08997 * 109.47664 * 300.00230 * 10 9 8 35 35 H 1.09005 * 109.47058 * 60.00267 * 10 9 8 36 36 H 0.96993 * 119.99802 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.47054 * 89.99652 * 21 20 2 38 38 H 1.08992 * 109.47473 * 209.99890 * 21 20 2 39 39 H 1.08999 * 109.46796 * 330.00224 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8023 2.4995 1.3837 7 6 5.7564 3.6159 1.4222 8 6 6.0638 3.9740 2.8777 9 6 7.0579 5.1363 2.9177 10 6 7.3649 5.4948 4.3731 11 6 8.3436 6.6400 4.4128 12 1 8.7097 7.0696 3.4919 13 6 8.7717 7.1395 5.6244 14 7 9.6254 8.1393 5.6590 15 14 8.1390 6.3961 7.2171 16 1 9.0361 5.2900 7.6377 17 1 8.1107 7.4394 8.2734 18 1 6.7672 5.8680 7.0063 19 16 3.9333 -0.6731 -0.0074 20 6 2.2300 -1.1239 -0.0005 21 6 1.6848 -2.5289 -0.0006 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8897 0.5141 25 1 4.0431 2.9817 -0.5149 26 1 5.3958 1.8247 -0.5153 27 1 5.1523 1.7064 1.8999 28 1 6.6776 3.3242 0.9178 29 1 5.3244 4.4806 0.9184 30 1 5.1428 4.2655 3.3823 31 1 6.4960 3.1092 3.3810 32 1 7.9788 4.8444 2.4131 33 1 6.6262 6.0013 2.4142 34 1 6.4439 5.7869 4.8775 35 1 7.7966 4.6299 4.8771 36 1 9.9268 8.4904 6.5115 37 1 1.5529 -2.8673 -1.0283 38 1 2.3832 -3.1897 0.5128 39 1 0.7238 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719532045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:31 Heat of formation + Delta-G solvation = 16.337654 kcal Electronic energy + Delta-G solvation = -17027.441993 eV Core-core repulsion = 14288.773727 eV Total energy + Delta-G solvation = -2738.668266 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19580 -37.02296 -34.64105 -33.38262 -32.10305 -30.23617 -29.34296 -27.07266 -25.20818 -23.99805 -22.42039 -21.31633 -20.00358 -19.16154 -18.16671 -16.64529 -16.07602 -15.65771 -15.33113 -14.58315 -14.43906 -14.17377 -13.93189 -13.57080 -13.37164 -13.31181 -12.77928 -12.65809 -12.53554 -12.40465 -12.17455 -11.73644 -11.73432 -11.38583 -11.13234 -10.76416 -10.56935 -9.86836 -9.81068 -9.65706 -9.50278 -9.45004 -9.12737 -8.90904 -8.53743 -8.49602 -6.00570 -3.98097 0.41320 1.05694 1.46426 2.51797 3.33873 3.41174 3.46276 3.73631 4.20482 4.49215 4.56067 4.68458 4.71313 4.98189 5.01979 5.10467 5.24462 5.29495 5.33479 5.38310 5.43703 5.46631 5.51295 5.66114 5.79134 6.00731 6.03028 6.09432 6.37117 6.67284 6.76697 6.82731 7.02475 7.20524 7.37104 7.50286 7.56121 7.84633 8.58589 9.04678 9.62507 11.13024 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.002599 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.443387 B =10770.454472 C =10916.871709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 N -0.452 5.452 4 C 0.059 3.941 5 C 0.135 3.865 6 N -0.682 5.682 7 C 0.061 3.939 8 C -0.118 4.118 9 C -0.101 4.101 10 C -0.014 4.014 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 S 0.109 5.891 20 C -0.229 4.229 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.340 0.660 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 -22.584 -14.008 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.166 5.166 4 C -0.220 4.220 5 C 0.002 3.998 6 N -0.315 5.315 7 C -0.068 4.068 8 C -0.156 4.156 9 C -0.139 4.139 10 C -0.052 4.052 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.189 1.189 19 S 0.365 5.635 20 C -0.350 4.350 21 C -0.132 4.132 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.036 -22.047 -13.838 30.573 hybrid contribution -0.201 -0.687 0.680 0.988 sum -16.237 -22.734 -13.158 30.880 Atomic orbital electron populations 1.20363 0.87163 1.03395 1.02797 1.20224 0.98233 0.86202 1.02451 1.66089 1.04523 1.31296 1.14735 1.26826 0.94166 0.97371 1.03606 1.20472 0.93724 0.93668 0.91921 1.60462 1.48425 1.11457 1.11106 1.22106 0.92601 0.93170 0.98909 1.21676 1.00425 0.99427 0.94117 1.21413 0.96936 0.95754 0.99787 1.19573 0.96718 0.96508 0.92378 1.21189 1.24819 1.15446 0.94282 0.91118 1.25054 0.94680 0.94740 0.99209 1.69924 1.32733 1.25899 1.25951 0.86757 0.80122 0.78950 0.83342 1.20378 1.21450 1.18942 1.83968 1.07128 1.03522 1.68894 1.25682 0.94954 1.01001 1.13394 1.20236 1.01184 0.89028 1.02794 0.90721 0.90757 0.90463 0.87886 0.92944 0.84200 0.94997 0.90615 0.91496 0.92687 0.93003 0.92709 0.96616 0.97212 0.92815 0.90627 0.91152 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.06 36.01 0.36 -0.23 16 2 C 0.06 0.65 6.74 -84.23 -0.57 0.08 16 3 N -0.45 -5.84 10.53 -8.06 -0.08 -5.93 16 4 C 0.06 0.68 6.90 -13.46 -0.09 0.59 16 5 C 0.13 1.46 6.26 -4.97 -0.03 1.43 16 6 N -0.68 -8.47 6.49 -115.05 -0.75 -9.22 16 7 C 0.06 0.80 5.69 -3.82 -0.02 0.78 16 8 C -0.12 -1.90 5.47 -26.73 -0.15 -2.05 16 9 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 10 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 11 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 15 Si 0.88 22.22 27.47 -169.99 -4.67 17.56 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 19 S 0.11 1.03 23.18 -107.50 -2.49 -1.47 16 20 C -0.23 -2.11 6.59 -35.92 -0.24 -2.34 16 21 C -0.07 -0.42 10.10 36.01 0.36 -0.06 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.41 6.72 -51.93 -0.35 0.06 16 24 H 0.08 0.64 8.14 -51.94 -0.42 0.21 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.34 3.95 8.72 -39.29 -0.34 3.61 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.37 6.76 -51.93 -0.35 0.01 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -32.86 335.49 -9.68 -42.54 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.47 Total: -2.80 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.05 Total: -18.07 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.06 Total: -42.83 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.56 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.86 -9.68 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719532045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.881 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds