Wall clock time and date at job start Mon Mar 30 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31774 * 122.74945 * 2 1 4 4 C 1.29031 * 117.12862 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91823 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00063 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46897 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.08011 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00400 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00233 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99860 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47154 * 90.00205 * 15 13 11 17 17 H 1.48501 * 109.47128 * 210.00005 * 15 13 11 18 18 H 1.48494 * 109.47287 * 329.99529 * 15 13 11 19 19 S 1.70978 * 110.16257 * 0.22643 * 4 3 2 20 20 C 1.33635 * 122.74910 * 180.02562 * 2 1 3 21 21 C 1.50699 * 126.04247 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.46948 * 89.98186 * 1 2 3 23 23 H 1.08997 * 109.47007 * 209.97936 * 1 2 3 24 24 H 1.08989 * 109.47366 * 329.97882 * 1 2 3 25 25 H 1.09001 * 109.47558 * 330.00227 * 5 4 3 26 26 H 1.08998 * 109.47216 * 209.99889 * 5 4 3 27 27 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 28 28 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 29 29 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 30 30 H 1.08995 * 109.46615 * 299.99641 * 8 7 6 31 31 H 1.08996 * 109.46939 * 60.00272 * 8 7 6 32 32 H 1.08993 * 109.47740 * 299.99810 * 9 8 7 33 33 H 1.09005 * 109.47573 * 59.99976 * 9 8 7 34 34 H 1.08997 * 109.47664 * 300.00230 * 10 9 8 35 35 H 1.09005 * 109.47058 * 60.00267 * 10 9 8 36 36 H 0.96993 * 119.99802 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.47054 * 89.99652 * 21 20 2 38 38 H 1.08992 * 109.47473 * 209.99890 * 21 20 2 39 39 H 1.08999 * 109.46796 * 330.00224 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8023 2.4995 1.3837 7 6 5.7564 3.6159 1.4222 8 6 6.0638 3.9740 2.8777 9 6 7.0579 5.1363 2.9177 10 6 7.3649 5.4948 4.3731 11 6 8.3436 6.6400 4.4128 12 1 8.7097 7.0696 3.4919 13 6 8.7717 7.1395 5.6244 14 7 9.6254 8.1393 5.6590 15 14 8.1390 6.3961 7.2171 16 1 9.0361 5.2900 7.6377 17 1 8.1107 7.4394 8.2734 18 1 6.7672 5.8680 7.0063 19 16 3.9333 -0.6731 -0.0074 20 6 2.2300 -1.1239 -0.0005 21 6 1.6848 -2.5289 -0.0006 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8897 0.5141 25 1 4.0431 2.9817 -0.5149 26 1 5.3958 1.8247 -0.5153 27 1 5.1523 1.7064 1.8999 28 1 6.6776 3.3242 0.9178 29 1 5.3244 4.4806 0.9184 30 1 5.1428 4.2655 3.3823 31 1 6.4960 3.1092 3.3810 32 1 7.9788 4.8444 2.4131 33 1 6.6262 6.0013 2.4142 34 1 6.4439 5.7869 4.8775 35 1 7.7966 4.6299 4.8771 36 1 9.9268 8.4904 6.5115 37 1 1.5529 -2.8673 -1.0283 38 1 2.3832 -3.1897 0.5128 39 1 0.7238 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719532045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:31 Heat of formation + Delta-G solvation = -5.506637 kcal Electronic energy + Delta-G solvation = -17028.389233 eV Core-core repulsion = 14288.773727 eV Total energy + Delta-G solvation = -2739.615505 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94428 -38.09806 -36.13254 -34.60488 -33.73953 -31.21914 -30.42706 -28.30263 -26.03541 -25.38620 -23.26141 -22.73798 -21.70877 -19.90481 -18.94707 -18.79147 -17.08538 -16.52196 -16.35789 -16.18482 -15.54788 -15.45319 -14.83277 -14.70120 -14.33621 -14.09566 -13.82444 -13.73954 -13.69454 -13.38758 -13.18307 -13.05015 -12.88945 -12.76642 -12.29938 -12.11902 -12.01982 -11.74695 -11.38641 -11.32925 -11.22869 -10.75870 -10.58721 -10.18560 -9.66256 -9.42143 -8.29355 -6.33246 -0.32674 0.35020 0.72903 1.35569 1.38048 1.50589 1.74897 2.36725 2.96546 3.05939 3.29962 3.90947 4.01773 4.08616 4.15034 4.16566 4.30967 4.48599 4.56955 4.59659 4.63128 4.66959 4.76336 4.78639 4.90054 4.92784 5.03058 5.04367 5.13678 5.19072 5.26230 5.41542 5.58057 5.66112 5.68941 5.89417 6.29037 6.30343 6.75092 6.81626 7.31530 8.87562 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.002599 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.443387 B =10770.454472 C =10916.871709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.485 5.485 4 C 0.035 3.965 5 C 0.137 3.863 6 N -0.691 5.691 7 C 0.070 3.930 8 C -0.107 4.107 9 C -0.094 4.094 10 C -0.014 4.014 11 C -0.534 4.534 12 H 0.031 0.969 13 C 0.000 4.000 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.248 1.248 19 S 0.135 5.865 20 C -0.225 4.225 21 C -0.075 4.075 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.345 0.655 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.675 -25.428 -13.659 33.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 N -0.201 5.201 4 C -0.243 4.243 5 C 0.005 3.995 6 N -0.324 5.324 7 C -0.059 4.059 8 C -0.145 4.145 9 C -0.132 4.132 10 C -0.051 4.051 11 C -0.572 4.572 12 H 0.049 0.951 13 C -0.197 4.197 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.172 1.172 19 S 0.391 5.609 20 C -0.346 4.346 21 C -0.134 4.134 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.384 -24.904 -13.510 33.240 hybrid contribution 0.244 0.192 0.483 0.575 sum -17.140 -24.711 -13.027 32.774 Atomic orbital electron populations 1.20434 0.85560 1.03891 1.03568 1.20671 0.99524 0.86202 1.03549 1.66097 1.05438 1.33006 1.15537 1.26873 0.94078 0.98637 1.04751 1.20450 0.94402 0.93591 0.91016 1.60369 1.48125 1.11516 1.12389 1.21902 0.93404 0.93648 0.96914 1.21489 0.98843 0.97986 0.96188 1.21280 0.98054 0.97168 0.96741 1.19553 0.95232 0.94807 0.95507 1.21571 1.25736 1.16857 0.93006 0.95077 1.26080 0.94859 0.95175 1.03538 1.70079 1.34411 1.27685 1.27223 0.85604 0.80349 0.78360 0.78003 1.18978 1.20974 1.17156 1.83793 1.07316 1.01711 1.68122 1.26182 0.94732 1.02247 1.11430 1.20407 1.01959 0.86966 1.04058 0.89789 0.88525 0.91670 0.88642 0.91058 0.83650 0.93842 0.90888 0.92168 0.91739 0.93071 0.93429 0.96548 0.96328 0.92528 0.89172 0.90276 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.06 71.24 0.72 -0.34 16 2 C 0.03 0.64 6.74 41.52 0.28 0.92 16 3 N -0.49 -12.32 10.53 -179.40 -1.89 -14.20 16 4 C 0.03 0.77 6.90 88.52 0.61 1.38 16 5 C 0.14 2.84 6.26 85.55 0.54 3.38 16 6 N -0.69 -16.19 6.49 -517.92 -3.36 -19.55 16 7 C 0.07 1.75 5.69 86.30 0.49 2.24 16 8 C -0.11 -3.26 5.47 30.59 0.17 -3.09 16 9 C -0.09 -3.67 5.15 30.59 0.16 -3.51 16 10 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 11 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 12 H 0.03 2.02 7.99 -2.90 -0.02 2.00 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 14 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 15 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 19 S 0.14 2.30 23.18 -56.49 -1.31 0.99 16 20 C -0.22 -3.68 6.59 24.64 0.16 -3.52 16 21 C -0.07 -0.64 10.10 71.24 0.72 0.08 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.10 0.85 6.72 -2.39 -0.02 0.83 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.35 7.41 8.72 -89.69 -0.78 6.63 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 35 H 0.02 0.85 7.57 -2.38 -0.02 0.84 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 0.55 6.76 -2.39 -0.02 0.54 16 Total: -1.00 -71.67 335.49 0.48 -71.19 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.19 Total: 9.13 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.67 Total: -33.99 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.95 Total: -94.60 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -71.67 0.48 -71.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719532045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.682 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds