Wall clock time and date at job start Mon Mar 30 2020 07:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30583 * 1 3 3 Si 1.86801 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47258 * 274.98329 * 3 2 1 5 5 H 1.48501 * 109.46994 * 34.98344 * 3 2 1 6 6 H 1.48497 * 109.47143 * 154.97908 * 3 2 1 7 7 C 1.40352 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 185.95618 * 7 2 1 9 9 C 1.40187 * 119.99587 * 5.68626 * 7 2 1 10 10 N 1.32469 * 125.30777 * 353.97148 * 9 7 2 11 11 C 1.33973 * 109.78415 * 179.86294 * 10 9 7 12 12 C 1.40531 * 133.19702 * 180.08896 * 11 10 9 13 13 C 1.36359 * 119.84584 * 180.33319 * 12 11 10 14 14 C 1.39037 * 120.76138 * 359.97438 * 13 12 11 15 15 C 1.37960 * 120.57483 * 0.02562 * 14 13 12 16 16 C 1.38728 * 119.76555 * 359.97304 * 15 14 13 17 17 N 1.37854 * 125.30322 * 174.27680 * 9 7 2 18 18 C 1.46500 * 126.53543 * 359.97438 * 17 9 7 19 19 C 1.52997 * 109.46588 * 90.02554 * 18 17 9 20 20 H 1.09003 * 115.55652 * 330.58317 * 19 18 17 21 21 C 1.53004 * 117.49859 * 116.25656 * 19 18 17 22 22 C 1.53002 * 117.49507 * 184.90800 * 19 18 17 23 23 C 1.52993 * 138.58358 * 121.62187 * 22 19 18 24 24 C 1.52984 * 138.58916 * 23.40926 * 22 19 18 25 25 H 0.97004 * 120.00335 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.07774 * 0.35581 * 12 11 10 27 27 H 1.08004 * 119.61325 * 179.97438 * 13 12 11 28 28 H 1.08001 * 119.71325 * 180.02562 * 14 13 12 29 29 H 1.08001 * 120.12020 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.46926 * 210.02448 * 18 17 9 31 31 H 1.08999 * 109.47409 * 330.02576 * 18 17 9 32 32 H 1.08997 * 117.50139 * 214.97778 * 21 19 18 33 33 H 1.09004 * 117.50065 * 359.97438 * 21 19 18 34 34 H 1.09004 * 117.49986 * 336.59441 * 23 22 19 35 35 H 1.09001 * 117.49868 * 121.61972 * 23 22 19 36 36 H 1.08999 * 117.49919 * 238.37875 * 24 22 19 37 37 H 1.09010 * 117.50171 * 23.39962 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3820 2.1072 -1.3947 5 1 1.4939 2.6200 0.8027 6 1 3.5860 1.4121 0.5921 7 6 2.0076 -1.2154 0.0005 8 1 3.0832 -1.2179 0.0976 9 6 1.3118 -2.4266 -0.1192 10 7 -0.0066 -2.5547 -0.1251 11 6 -0.3361 -3.8465 -0.2581 12 6 -1.5656 -4.5238 -0.3235 13 6 -1.5866 -5.8807 -0.4576 14 6 -0.4030 -6.6064 -0.5315 15 6 0.8176 -5.9663 -0.4698 16 6 0.8657 -4.5866 -0.3335 17 7 1.8931 -3.6704 -0.2432 18 6 3.3282 -3.9633 -0.2739 19 6 3.8292 -4.2081 1.1508 20 1 3.2895 -3.6794 1.9364 21 6 4.3702 -5.6010 1.4798 22 6 5.3323 -4.4182 1.3447 23 6 6.4885 -3.7851 2.1212 24 6 6.6402 -4.0788 0.6273 25 1 -0.4851 0.8400 0.0004 26 1 -2.4917 -3.9710 -0.2680 27 1 -2.5337 -6.3975 -0.5071 28 1 -0.4394 -7.6805 -0.6380 29 1 1.7325 -6.5373 -0.5283 30 1 3.5046 -4.8526 -0.8791 31 1 3.8625 -3.1175 -0.7067 32 1 4.1867 -5.9885 2.4819 33 1 4.3688 -6.3431 0.6813 34 1 6.3823 -2.7425 2.4209 35 1 7.0354 -4.4213 2.8172 36 1 7.2868 -4.9081 0.3405 37 1 6.6339 -3.2293 -0.0558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722904477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:24 Heat of formation + Delta-G solvation = 121.554695 kcal Electronic energy + Delta-G solvation = -19741.103270 eV Core-core repulsion = 16871.553606 eV Total energy + Delta-G solvation = -2869.549664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39254 -38.25544 -36.06246 -33.85062 -33.27565 -31.57643 -29.34988 -28.59877 -25.98450 -25.74061 -22.39154 -21.40056 -21.24028 -20.64878 -19.37063 -18.78329 -16.97170 -16.14049 -16.02706 -15.01299 -14.85879 -14.82239 -14.38204 -14.02247 -13.38551 -13.09584 -12.77317 -12.65297 -12.39995 -11.57909 -11.53314 -11.43940 -11.40425 -11.27748 -11.01314 -10.63515 -10.50737 -10.33209 -10.26394 -9.94211 -9.79192 -9.61728 -9.31590 -8.96695 -7.89390 -7.22308 -6.84828 -6.68130 -4.62160 2.26946 2.72029 2.98614 3.01842 3.05201 3.64804 3.76910 3.83013 4.07422 4.16136 4.46629 4.85886 4.96042 5.01978 5.50014 5.51283 5.59024 5.61626 5.68450 5.71925 5.78539 5.83757 5.87248 5.90475 5.95971 6.03776 6.08005 6.15676 6.37878 6.50833 6.56863 6.74684 6.88811 7.00303 7.27226 7.48834 7.62939 7.75248 7.92733 8.00372 8.33318 8.64023 9.02926 9.95857 10.21398 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.009934 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.623053 B = 2818.010451 C = 5421.210338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.078 3.922 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.440 4.440 8 H 0.087 0.913 9 C 0.420 3.580 10 N -0.537 5.537 11 C 0.108 3.892 12 C -0.130 4.130 13 C -0.124 4.124 14 C -0.183 4.183 15 C -0.100 4.100 16 C -0.002 4.002 17 N -0.536 5.536 18 C 0.165 3.835 19 C -0.105 4.105 20 H 0.111 0.889 21 C -0.125 4.125 22 C -0.228 4.228 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.279 0.721 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -5.527 1.179 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.184 3.816 10 N -0.260 5.260 11 C -0.019 4.019 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.203 4.203 15 C -0.122 4.122 16 C -0.109 4.109 17 N -0.232 5.232 18 C 0.040 3.960 19 C -0.124 4.124 20 H 0.129 0.871 21 C -0.161 4.161 22 C -0.228 4.228 23 C -0.169 4.169 24 C -0.168 4.168 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.271 -4.730 1.248 9.609 hybrid contribution 1.035 -0.026 0.007 1.035 sum 9.305 -4.756 1.255 10.526 Atomic orbital electron populations 1.69979 1.07205 1.28568 1.28012 1.25858 0.94878 1.00762 0.93478 0.86178 0.80279 0.80416 0.79190 1.19321 1.19877 1.18492 1.18493 0.94416 0.87570 1.47258 0.89508 1.20452 0.87103 0.83604 0.90444 1.71400 1.09259 1.12950 1.32403 1.19574 0.92046 0.91636 0.98646 1.19769 0.95044 0.93280 1.06997 1.20207 0.96890 0.93637 1.03706 1.20282 0.91898 0.97856 1.10308 1.19579 0.97012 0.90421 1.05202 1.18869 0.89852 0.91604 1.10613 1.45491 1.03614 1.06851 1.67216 1.20749 0.80181 1.01282 0.93744 1.22628 0.91527 0.98906 0.99346 0.87139 1.22808 1.00094 0.90885 1.02358 1.21508 0.88359 1.05145 1.07820 1.22624 0.98807 1.01044 0.94375 1.22612 0.96433 1.02602 0.95150 0.90988 0.87468 0.87882 0.87927 0.88719 0.91183 0.89630 0.88884 0.88790 0.88584 0.88938 0.88897 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.04 11.88 55.57 0.66 -18.38 16 2 C 0.08 1.92 5.49 -17.29 -0.09 1.83 16 3 Si 0.92 17.97 29.57 -169.99 -5.03 12.95 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.44 -11.24 8.96 -38.06 -0.34 -11.58 16 8 H 0.09 2.03 7.19 -52.49 -0.38 1.65 16 9 C 0.42 11.31 7.41 -155.67 -1.15 10.16 16 10 N -0.54 -15.49 9.35 -10.31 -0.10 -15.59 16 11 C 0.11 2.86 7.21 -84.89 -0.61 2.25 16 12 C -0.13 -3.00 10.07 -39.39 -0.40 -3.40 16 13 C -0.12 -2.47 9.96 -39.96 -0.40 -2.87 16 14 C -0.18 -3.53 10.04 -39.39 -0.40 -3.92 16 15 C -0.10 -2.08 10.04 -39.50 -0.40 -2.48 16 16 C 0.00 -0.05 6.88 -83.75 -0.58 -0.62 16 17 N -0.54 -12.58 2.86 -113.48 -0.32 -12.90 16 18 C 0.16 3.06 6.17 -4.04 -0.02 3.04 16 19 C -0.10 -1.77 6.01 -90.62 -0.54 -2.32 16 20 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 21 C -0.12 -1.76 10.18 -26.70 -0.27 -2.03 16 22 C -0.23 -3.18 5.40 -154.49 -0.83 -4.02 16 23 C -0.13 -1.56 10.53 -26.73 -0.28 -1.85 16 24 C -0.13 -1.53 10.53 -26.74 -0.28 -1.81 16 25 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 26 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 27 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 28 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 31 H 0.09 1.56 7.39 -51.93 -0.38 1.18 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.11 8.14 -51.92 -0.42 0.68 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -29.93 319.71 -11.52 -41.45 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.95 Total: 7.27 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -6.60 Total: -19.62 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.24 Total: -46.87 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.93 -11.52 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722904477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.008 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds