Wall clock time and date at job start Mon Mar 30 2020 07:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30583 * 1 3 3 Si 1.86801 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47258 * 274.98329 * 3 2 1 5 5 H 1.48501 * 109.46994 * 34.98344 * 3 2 1 6 6 H 1.48497 * 109.47143 * 154.97908 * 3 2 1 7 7 C 1.40352 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 185.95618 * 7 2 1 9 9 C 1.40187 * 119.99587 * 5.68626 * 7 2 1 10 10 N 1.32469 * 125.30777 * 353.97148 * 9 7 2 11 11 C 1.33973 * 109.78415 * 179.86294 * 10 9 7 12 12 C 1.40531 * 133.19702 * 180.08896 * 11 10 9 13 13 C 1.36359 * 119.84584 * 180.33319 * 12 11 10 14 14 C 1.39037 * 120.76138 * 359.97438 * 13 12 11 15 15 C 1.37960 * 120.57483 * 0.02562 * 14 13 12 16 16 C 1.38728 * 119.76555 * 359.97304 * 15 14 13 17 17 N 1.37854 * 125.30322 * 174.27680 * 9 7 2 18 18 C 1.46500 * 126.53543 * 359.97438 * 17 9 7 19 19 C 1.52997 * 109.46588 * 90.02554 * 18 17 9 20 20 H 1.09003 * 115.55652 * 330.58317 * 19 18 17 21 21 C 1.53004 * 117.49859 * 116.25656 * 19 18 17 22 22 C 1.53002 * 117.49507 * 184.90800 * 19 18 17 23 23 C 1.52993 * 138.58358 * 121.62187 * 22 19 18 24 24 C 1.52984 * 138.58916 * 23.40926 * 22 19 18 25 25 H 0.97004 * 120.00335 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.07774 * 0.35581 * 12 11 10 27 27 H 1.08004 * 119.61325 * 179.97438 * 13 12 11 28 28 H 1.08001 * 119.71325 * 180.02562 * 14 13 12 29 29 H 1.08001 * 120.12020 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.46926 * 210.02448 * 18 17 9 31 31 H 1.08999 * 109.47409 * 330.02576 * 18 17 9 32 32 H 1.08997 * 117.50139 * 214.97778 * 21 19 18 33 33 H 1.09004 * 117.50065 * 359.97438 * 21 19 18 34 34 H 1.09004 * 117.49986 * 336.59441 * 23 22 19 35 35 H 1.09001 * 117.49868 * 121.61972 * 23 22 19 36 36 H 1.08999 * 117.49919 * 238.37875 * 24 22 19 37 37 H 1.09010 * 117.50171 * 23.39962 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3820 2.1072 -1.3947 5 1 1.4939 2.6200 0.8027 6 1 3.5860 1.4121 0.5921 7 6 2.0076 -1.2154 0.0005 8 1 3.0832 -1.2179 0.0976 9 6 1.3118 -2.4266 -0.1192 10 7 -0.0066 -2.5547 -0.1251 11 6 -0.3361 -3.8465 -0.2581 12 6 -1.5656 -4.5238 -0.3235 13 6 -1.5866 -5.8807 -0.4576 14 6 -0.4030 -6.6064 -0.5315 15 6 0.8176 -5.9663 -0.4698 16 6 0.8657 -4.5866 -0.3335 17 7 1.8931 -3.6704 -0.2432 18 6 3.3282 -3.9633 -0.2739 19 6 3.8292 -4.2081 1.1508 20 1 3.2895 -3.6794 1.9364 21 6 4.3702 -5.6010 1.4798 22 6 5.3323 -4.4182 1.3447 23 6 6.4885 -3.7851 2.1212 24 6 6.6402 -4.0788 0.6273 25 1 -0.4851 0.8400 0.0004 26 1 -2.4917 -3.9710 -0.2680 27 1 -2.5337 -6.3975 -0.5071 28 1 -0.4394 -7.6805 -0.6380 29 1 1.7325 -6.5373 -0.5283 30 1 3.5046 -4.8526 -0.8791 31 1 3.8625 -3.1175 -0.7067 32 1 4.1867 -5.9885 2.4819 33 1 4.3688 -6.3431 0.6813 34 1 6.3823 -2.7425 2.4209 35 1 7.0354 -4.4213 2.8172 36 1 7.2868 -4.9081 0.3405 37 1 6.6339 -3.2293 -0.0558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722904477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:24 Heat of formation + Delta-G solvation = 107.234926 kcal Electronic energy + Delta-G solvation = -19741.724221 eV Core-core repulsion = 16871.553606 eV Total energy + Delta-G solvation = -2870.170616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16784 -39.40106 -37.74760 -35.51114 -34.86559 -33.01821 -31.03581 -30.39381 -27.71973 -27.36339 -23.31031 -23.14123 -22.63247 -22.37060 -21.03749 -19.93712 -18.81394 -17.84735 -17.66830 -16.55607 -16.21667 -15.87633 -15.72718 -15.67148 -14.96158 -14.72127 -14.44326 -14.34798 -13.87799 -13.26638 -13.06373 -12.85604 -12.72364 -12.43226 -12.34472 -12.30767 -12.10327 -11.97731 -11.87967 -11.22798 -10.99493 -10.86332 -10.81564 -10.64499 -9.80981 -9.02549 -8.62356 -8.51587 -6.55507 0.52010 1.01726 1.38124 1.42980 1.54491 2.11600 2.28378 2.37782 2.71376 2.78402 3.17208 3.36137 3.61167 3.74043 3.93484 3.97639 4.10252 4.32156 4.40093 4.47277 4.50440 4.58699 4.70281 4.74710 4.75501 4.79203 4.88214 4.91820 4.99581 5.00449 5.13800 5.17404 5.27073 5.28211 5.57915 5.68942 5.92841 5.97708 6.16894 6.24883 6.54506 6.78358 7.20050 8.07667 8.41578 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.009934 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.623053 B = 2818.010451 C = 5421.210338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.031 3.969 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.467 4.467 8 H 0.097 0.903 9 C 0.392 3.608 10 N -0.586 5.586 11 C 0.049 3.951 12 C -0.149 4.149 13 C -0.117 4.117 14 C -0.163 4.163 15 C -0.103 4.103 16 C -0.018 4.018 17 N -0.535 5.535 18 C 0.166 3.834 19 C -0.132 4.132 20 H 0.071 0.929 21 C -0.108 4.108 22 C -0.237 4.237 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.283 0.717 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.099 -7.849 0.959 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.192 4.192 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.505 4.505 8 H 0.115 0.885 9 C 0.153 3.847 10 N -0.311 5.311 11 C -0.076 4.076 12 C -0.170 4.170 13 C -0.137 4.137 14 C -0.183 4.183 15 C -0.125 4.125 16 C -0.125 4.125 17 N -0.230 5.230 18 C 0.044 3.956 19 C -0.151 4.151 20 H 0.089 0.911 21 C -0.144 4.144 22 C -0.238 4.238 23 C -0.164 4.164 24 C -0.154 4.154 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.466 -7.110 1.027 12.694 hybrid contribution 0.279 0.460 0.074 0.543 sum 10.745 -6.650 1.101 12.684 Atomic orbital electron populations 1.70120 1.09323 1.29791 1.30001 1.26965 0.95613 1.04509 0.92091 0.84972 0.78998 0.74927 0.79435 1.18593 1.19307 1.17193 1.18870 0.94988 0.88088 1.48521 0.88494 1.20772 0.87307 0.85211 0.91399 1.71245 1.10946 1.15025 1.33923 1.20129 0.94340 0.91665 1.01449 1.20051 0.94028 0.95007 1.07945 1.20664 0.99283 0.92204 1.01544 1.20898 0.90758 1.00111 1.06522 1.20033 0.99197 0.89022 1.04218 1.19286 0.89192 0.92980 1.11086 1.45641 1.05306 1.05810 1.66251 1.20939 0.77610 1.01757 0.95332 1.22247 0.94093 1.01782 0.96999 0.91078 1.22850 0.98594 0.89830 1.03156 1.21641 0.87379 1.04079 1.10705 1.22796 0.97254 1.01108 0.95252 1.22787 0.94426 1.03211 0.94940 0.90636 0.88026 0.83868 0.83172 0.85568 0.89223 0.90196 0.88270 0.87165 0.89033 0.86767 0.86457 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.57 11.88 21.89 0.26 -43.31 16 2 C 0.03 1.59 5.49 85.39 0.47 2.06 16 3 Si 1.00 38.03 29.57 68.60 2.03 40.06 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.47 -25.24 8.96 23.26 0.21 -25.03 16 8 H 0.10 4.77 7.19 -2.91 -0.02 4.75 16 9 C 0.39 22.46 7.41 133.69 0.99 23.45 16 10 N -0.59 -36.24 9.35 -186.52 -1.74 -37.98 16 11 C 0.05 2.73 7.21 40.14 0.29 3.02 16 12 C -0.15 -7.07 10.07 22.39 0.23 -6.84 16 13 C -0.12 -4.38 9.96 22.02 0.22 -4.16 16 14 C -0.16 -5.64 10.04 22.40 0.22 -5.42 16 15 C -0.10 -4.04 10.04 22.32 0.22 -3.82 16 16 C -0.02 -0.86 6.88 39.06 0.27 -0.59 16 17 N -0.54 -26.11 2.86 -512.93 -1.46 -27.57 16 18 C 0.17 6.25 6.17 86.38 0.53 6.78 16 19 C -0.13 -4.50 6.01 -10.79 -0.06 -4.57 16 20 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 21 C -0.11 -2.82 10.18 30.62 0.31 -2.51 16 22 C -0.24 -6.22 5.40 -52.17 -0.28 -6.50 16 23 C -0.13 -2.72 10.53 30.59 0.32 -2.40 16 24 C -0.12 -2.38 10.53 30.59 0.32 -2.06 16 25 H 0.28 14.45 8.29 -92.71 -0.77 13.68 16 26 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 27 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.09 2.93 7.88 -2.39 -0.02 2.91 16 31 H 0.08 3.00 7.39 -2.39 -0.02 2.98 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.11 2.50 8.03 -2.38 -0.02 2.48 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -71.26 319.71 4.41 -66.85 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 1.07 Total: 30.54 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.26 Total: -28.59 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -2.95 Total: -108.86 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -71.26 4.41 -66.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722904477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.088 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds