Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99838 * 2 1 4 4 C 1.50706 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.38290 * 119.93250 * 260.02074 * 4 3 2 6 6 C 1.38084 * 120.08920 * 179.97438 * 5 4 3 7 7 C 1.38949 * 119.94997 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.06745 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99972 * 359.97438 * 8 7 6 10 10 C 1.46497 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47416 * 89.99858 * 10 8 7 12 12 H 1.07999 * 120.00462 * 359.97438 * 11 10 8 13 13 C 1.37876 * 119.99948 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00050 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00185 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46719 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47260 * 119.99738 * 15 13 11 18 18 H 1.48505 * 109.46867 * 240.00061 * 15 13 11 19 19 C 1.38867 * 119.86157 * 359.70611 * 7 6 5 20 20 C 1.38240 * 119.91580 * 0.56650 * 19 7 6 21 21 Cl 1.73599 * 119.98010 * 179.73209 * 20 19 7 22 22 H 1.09006 * 109.47046 * 60.00256 * 1 2 3 23 23 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47401 * 300.00135 * 1 2 3 25 25 H 1.00904 * 110.99756 * 123.95170 * 2 1 3 26 26 H 1.08999 * 109.47515 * 59.99971 * 3 2 1 27 27 H 1.08993 * 109.47064 * 299.99756 * 3 2 1 28 28 H 1.08004 * 119.95024 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.02344 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47030 * 90.00154 * 9 8 7 31 31 H 1.09005 * 109.47437 * 210.00068 * 9 8 7 32 32 H 1.09003 * 109.47265 * 330.00020 * 9 8 7 33 33 H 1.09002 * 109.46911 * 210.00362 * 10 8 7 34 34 H 1.09003 * 109.47234 * 329.99480 * 10 8 7 35 35 H 0.97003 * 119.99944 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.04017 * 180.30322 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1968 1.5206 1.1812 6 6 5.5771 1.4838 1.1856 7 6 6.2688 1.2568 0.0021 8 7 7.6650 1.2197 0.0036 9 6 8.4017 1.4208 1.2538 10 6 8.3927 0.9808 -1.2452 11 6 8.6797 2.2977 -1.9192 12 1 8.3524 3.2204 -1.4633 13 6 9.3593 2.3245 -3.1186 14 7 9.7575 1.2009 -3.6741 15 14 9.7157 3.9570 -3.9538 16 1 9.1670 5.0644 -3.1305 17 1 11.1836 4.1283 -4.0997 18 1 9.0793 3.9759 -5.2955 19 6 5.5688 1.0614 -1.1813 20 6 4.1871 1.1049 -1.1802 21 17 3.3106 0.8677 -2.6598 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8306 -0.5261 0.7814 26 1 1.6459 1.8948 0.8900 27 1 1.6459 1.8947 -0.8899 28 1 3.6589 1.6966 2.1011 29 1 6.1187 1.6314 2.1082 30 1 8.5573 0.4590 1.7425 31 1 9.3669 1.8787 1.0372 32 1 7.8291 2.0743 1.9119 33 1 9.3317 0.4721 -1.0268 34 1 7.7877 0.3591 -1.9051 35 1 10.2353 1.2198 -4.5181 36 1 6.1034 0.8798 -2.1019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723148537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = 24.127453 kcal Electronic energy + Delta-G solvation = -18024.379065 eV Core-core repulsion = 15148.171789 eV Total energy + Delta-G solvation = -2876.207276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24806 -36.75370 -35.79904 -34.87033 -32.71278 -30.50796 -30.17390 -27.84518 -26.63483 -24.75058 -23.44872 -22.20221 -21.63687 -19.81659 -16.95059 -16.52290 -16.03973 -15.39373 -14.71263 -14.55298 -14.45111 -14.18427 -13.79803 -13.33141 -13.11929 -13.00933 -12.54789 -12.20007 -11.97409 -11.70730 -11.58406 -11.34617 -11.11262 -11.10487 -10.88420 -10.76493 -10.39365 -10.22832 -9.98855 -9.78595 -8.93291 -8.52986 -8.35908 -8.20142 -6.59150 -6.06979 -4.20194 1.81556 2.00047 2.74407 3.24908 3.33312 3.37592 4.04619 4.16582 4.39318 4.58017 5.13190 5.15706 5.19904 5.36702 5.40906 5.53021 5.61925 5.72830 5.82350 5.84516 5.98673 6.08612 6.12643 6.26196 6.35103 6.66120 6.84889 6.90850 7.01331 7.06806 7.27407 7.31195 7.43480 7.77674 8.09410 8.16075 8.33818 8.88135 9.47039 10.93399 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.005389 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.903602 B = 5194.514493 C = 5982.498640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.685 5.685 3 C 0.113 3.887 4 C -0.171 4.171 5 C -0.056 4.056 6 C -0.219 4.219 7 C 0.253 3.747 8 N -0.610 5.610 9 C 0.097 3.903 10 C 0.246 3.754 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.184 4.184 20 C 0.042 3.958 21 Cl -0.077 7.077 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.016 0.984 25 H 0.340 0.660 26 H 0.030 0.970 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 -0.995 9.318 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.316 5.316 3 C -0.015 4.015 4 C -0.174 4.174 5 C -0.076 4.076 6 C -0.243 4.243 7 C 0.144 3.856 8 N -0.314 5.314 9 C -0.047 4.047 10 C 0.127 3.873 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.207 4.207 20 C 0.014 3.986 21 Cl -0.048 7.048 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.158 0.842 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.250 -1.170 8.328 14.859 hybrid contribution 0.126 1.169 0.216 1.196 sum -12.124 0.000 8.544 14.832 Atomic orbital electron populations 1.22167 0.88354 1.01477 1.00000 1.60401 1.06832 1.14267 1.50052 1.20671 0.90866 0.89453 1.00509 1.19063 0.94477 1.11724 0.92183 1.20483 0.93349 0.97698 0.96053 1.20613 0.94062 1.12453 0.97135 1.17752 0.84344 0.90827 0.92631 1.47147 1.01469 1.73236 1.09568 1.21519 0.97182 0.99556 0.86428 1.19356 0.91570 0.96762 0.79634 1.21579 1.36524 0.93205 1.05948 0.92148 1.24953 0.95400 0.96673 0.96913 1.69936 1.38695 1.25904 1.18628 0.86472 0.77913 0.83755 0.79532 1.19711 1.20924 1.20757 1.20731 0.91662 1.09183 0.99148 1.20357 0.91343 1.00456 0.86460 1.98325 1.76492 1.95143 1.34821 0.91892 0.91729 0.96560 0.84224 0.95191 0.90444 0.86635 0.86252 0.94331 0.91187 0.92557 0.94939 0.94503 0.92625 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 60.07 0.64 0.93 16 2 N -0.69 -8.35 6.84 -122.42 -0.84 -9.18 16 3 C 0.11 1.48 5.22 -4.98 -0.03 1.45 16 4 C -0.17 -2.66 5.40 -104.55 -0.56 -3.23 16 5 C -0.06 -0.82 9.66 -39.62 -0.38 -1.21 16 6 C -0.22 -3.59 9.21 -39.37 -0.36 -3.95 16 7 C 0.25 4.98 6.55 -83.79 -0.55 4.43 16 8 N -0.61 -12.64 2.99 -181.00 -0.54 -13.18 16 9 C 0.10 1.62 10.19 59.85 0.61 2.23 16 10 C 0.25 6.07 4.92 -5.20 -0.03 6.05 16 11 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.18 -3.76 8.99 -39.35 -0.35 -4.11 16 20 C 0.04 0.76 6.31 -39.53 -0.25 0.51 16 21 Cl -0.08 -1.32 27.50 -51.86 -1.43 -2.74 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.34 3.86 8.81 -39.29 -0.35 3.51 16 26 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 27 H 0.08 1.06 7.35 -51.93 -0.38 0.68 16 28 H 0.12 1.35 8.03 -52.48 -0.42 0.93 16 29 H 0.12 1.71 6.14 -52.49 -0.32 1.39 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 32 H 0.06 0.81 6.20 -51.93 -0.32 0.49 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 0.97 6.18 -51.93 -0.32 0.65 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.14 3.27 6.13 -52.49 -0.32 2.94 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -28.44 315.15 -8.95 -37.38 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.93 Total: 1.46 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.68 Total: -9.98 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.64 Total: -47.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.43 Total: -2.74 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.44 -8.95 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723148537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.512 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds