Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99838 * 2 1 4 4 C 1.50706 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.38290 * 119.93250 * 260.02074 * 4 3 2 6 6 C 1.38084 * 120.08920 * 179.97438 * 5 4 3 7 7 C 1.38949 * 119.94997 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.06745 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99972 * 359.97438 * 8 7 6 10 10 C 1.46497 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47416 * 89.99858 * 10 8 7 12 12 H 1.07999 * 120.00462 * 359.97438 * 11 10 8 13 13 C 1.37876 * 119.99948 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00050 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00185 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46719 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47260 * 119.99738 * 15 13 11 18 18 H 1.48505 * 109.46867 * 240.00061 * 15 13 11 19 19 C 1.38867 * 119.86157 * 359.70611 * 7 6 5 20 20 C 1.38240 * 119.91580 * 0.56650 * 19 7 6 21 21 Cl 1.73599 * 119.98010 * 179.73209 * 20 19 7 22 22 H 1.09006 * 109.47046 * 60.00256 * 1 2 3 23 23 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47401 * 300.00135 * 1 2 3 25 25 H 1.00904 * 110.99756 * 123.95170 * 2 1 3 26 26 H 1.08999 * 109.47515 * 59.99971 * 3 2 1 27 27 H 1.08993 * 109.47064 * 299.99756 * 3 2 1 28 28 H 1.08004 * 119.95024 * 0.02562 * 5 4 3 29 29 H 1.07996 * 120.02344 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47030 * 90.00154 * 9 8 7 31 31 H 1.09005 * 109.47437 * 210.00068 * 9 8 7 32 32 H 1.09003 * 109.47265 * 330.00020 * 9 8 7 33 33 H 1.09002 * 109.46911 * 210.00362 * 10 8 7 34 34 H 1.09003 * 109.47234 * 329.99480 * 10 8 7 35 35 H 0.97003 * 119.99944 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.04017 * 180.30322 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1968 1.5206 1.1812 6 6 5.5771 1.4838 1.1856 7 6 6.2688 1.2568 0.0021 8 7 7.6650 1.2197 0.0036 9 6 8.4017 1.4208 1.2538 10 6 8.3927 0.9808 -1.2452 11 6 8.6797 2.2977 -1.9192 12 1 8.3524 3.2204 -1.4633 13 6 9.3593 2.3245 -3.1186 14 7 9.7575 1.2009 -3.6741 15 14 9.7157 3.9570 -3.9538 16 1 9.1670 5.0644 -3.1305 17 1 11.1836 4.1283 -4.0997 18 1 9.0793 3.9759 -5.2955 19 6 5.5688 1.0614 -1.1813 20 6 4.1871 1.1049 -1.1802 21 17 3.3106 0.8677 -2.6598 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8306 -0.5261 0.7814 26 1 1.6459 1.8948 0.8900 27 1 1.6459 1.8947 -0.8899 28 1 3.6589 1.6966 2.1011 29 1 6.1187 1.6314 2.1082 30 1 8.5573 0.4590 1.7425 31 1 9.3669 1.8787 1.0372 32 1 7.8291 2.0743 1.9119 33 1 9.3317 0.4721 -1.0268 34 1 7.7877 0.3591 -1.9051 35 1 10.2353 1.2198 -4.5181 36 1 6.1034 0.8798 -2.1019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723148537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = 6.892104 kcal Electronic energy + Delta-G solvation = -18025.126446 eV Core-core repulsion = 15148.171789 eV Total energy + Delta-G solvation = -2876.954656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61696 -38.10206 -37.08297 -36.15530 -34.69671 -31.85368 -31.52588 -29.60929 -27.82435 -26.25888 -24.78039 -23.50412 -23.09200 -21.22832 -18.65698 -18.31612 -17.24289 -16.89461 -16.22711 -15.96209 -15.61217 -15.37139 -15.25991 -14.79271 -14.51180 -14.15358 -14.03446 -13.76139 -13.21993 -13.07900 -12.98327 -12.73332 -12.63220 -12.56981 -12.41261 -12.32002 -12.14552 -11.70141 -11.65623 -11.49306 -10.65102 -10.44592 -9.57738 -9.23913 -8.38659 -7.88515 -6.37791 0.44552 0.66625 1.35665 1.36657 1.38106 1.49492 2.33472 2.58794 2.87274 3.06491 3.60454 3.98315 4.02175 4.27549 4.38580 4.47759 4.59226 4.62602 4.71608 4.72016 4.81760 4.85061 4.94355 4.98056 5.08612 5.11309 5.19230 5.39225 5.49485 5.64315 5.67346 5.93452 6.05647 6.16357 6.43045 6.58253 6.80018 6.84492 7.34008 8.83057 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.005389 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.903602 B = 5194.514493 C = 5982.498640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.701 5.701 3 C 0.118 3.882 4 C -0.160 4.160 5 C -0.044 4.044 6 C -0.208 4.208 7 C 0.227 3.773 8 N -0.625 5.625 9 C 0.096 3.904 10 C 0.264 3.736 11 C -0.541 4.541 12 H 0.051 0.949 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.280 1.280 19 C -0.214 4.214 20 C 0.029 3.971 21 Cl -0.077 7.077 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.346 0.654 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.013 0.987 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.362 0.101 11.589 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.333 5.333 3 C -0.011 4.011 4 C -0.164 4.164 5 C -0.063 4.063 6 C -0.231 4.231 7 C 0.121 3.879 8 N -0.332 5.332 9 C -0.047 4.047 10 C 0.143 3.857 11 C -0.580 4.580 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.206 1.206 19 C -0.238 4.238 20 C 0.001 3.999 21 Cl -0.049 7.049 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.164 0.836 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.031 0.969 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.062 -0.073 10.629 17.627 hybrid contribution 0.541 0.783 -0.442 1.049 sum -13.521 0.710 10.187 16.944 Atomic orbital electron populations 1.22182 0.86737 1.02336 1.00467 1.60331 1.08433 1.13761 1.50747 1.20630 0.88799 0.90313 1.01326 1.19476 0.96150 1.09354 0.91410 1.20965 0.92735 0.95394 0.97232 1.20937 0.94915 1.10609 0.96597 1.18031 0.83890 0.92331 0.93695 1.46988 1.02148 1.74822 1.09250 1.21679 0.96704 1.01081 0.85201 1.18812 0.90511 0.95169 0.81257 1.21792 1.36186 0.93663 1.06327 0.93059 1.25759 0.95269 0.99961 0.97573 1.70042 1.39506 1.27898 1.19114 0.85486 0.78114 0.79687 0.78282 1.19343 1.19847 1.20559 1.20550 0.92839 1.12060 0.98319 1.20522 0.90669 1.01079 0.87583 1.98315 1.76179 1.95180 1.35178 0.92404 0.90753 0.94997 0.83582 0.92599 0.91372 0.82141 0.83527 0.92537 0.92349 0.89787 0.96886 0.97322 0.92416 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.70 127.69 1.37 1.89 16 2 N -0.70 -15.17 6.84 -541.22 -3.70 -18.87 16 3 C 0.12 2.71 5.22 85.56 0.45 3.16 16 4 C -0.16 -4.62 5.40 -19.81 -0.11 -4.72 16 5 C -0.04 -1.11 9.66 22.25 0.21 -0.90 16 6 C -0.21 -6.20 9.21 22.40 0.21 -6.00 16 7 C 0.23 8.93 6.55 38.21 0.25 9.18 16 8 N -0.63 -26.42 2.99 -726.57 -2.17 -28.59 16 9 C 0.10 3.10 10.19 127.77 1.30 4.40 16 10 C 0.26 13.75 4.92 85.63 0.42 14.17 16 11 C -0.54 -30.25 9.39 25.60 0.24 -30.01 16 12 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 13 C 0.01 0.77 5.46 84.65 0.46 1.24 16 14 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 15 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C -0.21 -9.08 8.99 22.42 0.20 -8.88 16 20 C 0.03 1.06 6.31 22.31 0.14 1.20 16 21 Cl -0.08 -2.69 27.50 -2.72 -0.07 -2.77 16 22 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.35 6.76 8.81 -89.69 -0.79 5.97 16 26 H 0.06 1.02 8.00 -2.39 -0.02 1.00 16 27 H 0.07 1.72 7.35 -2.39 -0.02 1.70 16 28 H 0.16 2.70 8.03 -2.91 -0.02 2.68 16 29 H 0.15 3.54 6.14 -2.91 -0.02 3.53 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 32 H 0.08 2.20 6.20 -2.39 -0.01 2.19 16 33 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.01 0.50 6.18 -2.39 -0.01 0.49 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.10 5.10 6.13 -2.91 -0.02 5.08 16 Total: -1.00 -63.96 315.15 1.80 -62.16 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.30 Total: 11.35 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.15 Total: -15.28 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.59 Total: -101.81 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -0.07 Total: -2.77 kcal Total: -63.96 1.80 -62.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723148537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.048 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds