Wall clock time and date at job start Mon Mar 30 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50711 * 109.47087 * 240.00274 * 2 1 3 5 5 H 1.07999 * 119.99497 * 245.04168 * 4 2 1 6 6 C 1.37871 * 119.99813 * 65.04035 * 4 2 1 7 7 N 1.31520 * 120.00015 * 193.55630 * 6 4 2 8 8 Si 1.86797 * 120.00416 * 13.55107 * 6 4 2 9 9 H 1.48498 * 109.47285 * 94.16314 * 8 6 4 10 10 H 1.48494 * 109.47422 * 214.16574 * 8 6 4 11 11 H 1.48508 * 109.47034 * 334.16384 * 8 6 4 12 12 N 1.46904 * 109.47251 * 120.00345 * 2 1 3 13 13 C 1.46901 * 111.00035 * 54.07100 * 12 2 1 14 14 C 1.39739 * 110.99549 * 290.11456 * 12 2 1 15 15 C 1.38919 * 120.06059 * 70.04654 * 14 12 2 16 16 C 1.38084 * 119.93573 * 179.97438 * 15 14 12 17 17 C 1.38399 * 120.06408 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.94032 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.12463 * 359.74557 * 17 16 15 20 20 C 1.38128 * 120.05727 * 0.50664 * 19 17 16 21 21 C 1.50704 * 120.03034 * 179.76911 * 20 19 17 22 22 N 1.46902 * 109.47290 * 259.72208 * 21 20 19 23 23 H 1.08996 * 109.46867 * 307.80983 * 1 2 3 24 24 H 1.08996 * 109.47152 * 67.81615 * 1 2 3 25 25 H 1.09009 * 109.47125 * 187.81176 * 1 2 3 26 26 H 0.96993 * 120.00083 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.46674 * 295.17791 * 13 12 2 28 28 H 1.09002 * 109.46983 * 55.17838 * 13 12 2 29 29 H 1.08993 * 109.46833 * 175.17706 * 13 12 2 30 30 H 1.08000 * 120.03343 * 0.02562 * 15 14 12 31 31 H 1.08008 * 119.97085 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.97064 * 180.25270 * 19 17 16 33 33 H 1.09000 * 109.47086 * 19.72649 * 21 20 19 34 34 H 1.09000 * 109.47161 * 139.72136 * 21 20 19 35 35 H 1.00903 * 110.99966 * 179.97438 * 22 21 20 36 36 H 1.00899 * 110.99945 * 303.95538 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5844 -1.6335 -1.1335 6 6 1.7871 -0.1818 -2.4801 7 7 1.9818 -0.9153 -3.5542 8 14 1.1781 1.5762 -2.6475 9 1 2.3348 2.4825 -2.8614 10 1 0.2537 1.6717 -3.8057 11 1 0.4616 1.9720 -1.4084 12 7 2.0197 -0.6926 1.1994 13 6 1.4365 -2.0366 1.3062 14 6 1.7636 0.0575 2.3503 15 6 0.4602 0.2092 2.8063 16 6 0.2101 0.9505 3.9441 17 6 1.2565 1.5424 4.6298 18 17 0.9384 2.4743 6.0596 19 6 2.5561 1.3890 4.1807 20 6 2.8116 0.6530 3.0401 21 6 4.2269 0.4906 2.5485 22 7 4.4718 1.4268 1.4432 23 1 -0.3633 0.6300 0.8119 24 1 -0.3633 0.3880 -0.9516 25 1 -0.3634 -1.0182 0.1397 26 1 1.8096 -0.5433 -4.4333 27 1 0.3595 -1.9547 1.4528 28 1 1.6374 -2.5936 0.3911 29 1 1.8799 -2.5587 2.1541 30 1 -0.3567 -0.2528 2.2719 31 1 -0.8030 1.0685 4.2994 32 1 3.3711 1.8487 4.7200 33 1 4.9206 0.7002 3.3627 34 1 4.3751 -0.5311 2.1988 35 1 5.4150 1.3377 1.0961 36 1 3.7995 1.2954 0.7024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723156881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:31 Heat of formation + Delta-G solvation = 37.085839 kcal Electronic energy + Delta-G solvation = -18965.516663 eV Core-core repulsion = 16089.871305 eV Total energy + Delta-G solvation = -2875.645358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04685 -37.15631 -36.04955 -34.35925 -32.77086 -30.51544 -30.23026 -28.70803 -25.84104 -25.19629 -24.34040 -21.98656 -21.08369 -19.41925 -16.99812 -16.60285 -15.94695 -15.71387 -14.97445 -14.83797 -14.28567 -13.94169 -13.76401 -13.56213 -13.02795 -12.98541 -12.41388 -12.10530 -11.99379 -11.82732 -11.67248 -11.46697 -11.18483 -11.02066 -10.92229 -10.69318 -10.43571 -10.20300 -9.62592 -9.28974 -8.76713 -8.52932 -8.39436 -8.11398 -7.68522 -6.19512 -4.15731 1.33150 1.45772 2.23902 3.21752 3.31466 3.35882 3.75375 4.32901 4.52853 4.90989 4.99934 5.12154 5.23244 5.41544 5.45291 5.66061 5.75398 5.93683 6.00553 6.01522 6.12614 6.17136 6.27021 6.35414 6.39977 6.52262 6.56681 6.70959 6.83779 6.95491 7.07555 7.47191 7.55308 7.74553 7.88560 8.01385 8.52240 8.89308 9.44362 10.92766 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.006045 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.721618 B = 4630.854445 C = 4781.062838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.192 3.808 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.859 3.141 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.255 1.255 12 N -0.496 5.496 13 C 0.034 3.966 14 C 0.119 3.881 15 C -0.145 4.145 16 C -0.107 4.107 17 C -0.048 4.048 18 Cl -0.086 7.086 19 C -0.092 4.092 20 C -0.057 4.057 21 C 0.115 3.885 22 N -0.848 5.848 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.338 0.662 36 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 2.910 14.401 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.086 3.914 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.686 3.314 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.179 1.179 12 N -0.216 5.216 13 C -0.113 4.113 14 C 0.024 3.976 15 C -0.165 4.165 16 C -0.127 4.127 17 C -0.074 4.074 18 Cl -0.058 7.058 19 C -0.112 4.112 20 C -0.059 4.059 21 C -0.016 4.016 22 N -0.379 5.379 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.533 3.476 14.764 15.177 hybrid contribution -1.236 0.313 -0.674 1.443 sum -1.770 3.789 14.090 14.697 Atomic orbital electron populations 1.23090 1.00964 1.00388 1.00543 1.19732 0.89604 0.94577 0.87440 0.94479 1.20791 1.36247 1.10178 0.87669 0.90053 1.24831 0.94748 0.97153 0.95711 1.69932 1.48774 1.35759 0.98227 0.87272 0.79323 0.86428 0.78384 1.20373 1.21326 1.17917 1.59960 1.59034 1.02336 1.00258 1.22378 0.96503 0.89893 1.02549 1.19157 0.91025 0.94624 0.92816 1.22045 0.98106 1.00028 0.96354 1.20873 0.98143 0.98234 0.95450 1.20787 0.94949 1.00360 0.91353 1.98336 1.96016 1.72556 1.38846 1.20786 0.94805 0.98861 0.96713 1.19692 0.95661 0.96759 0.93744 1.20430 0.91142 0.95734 0.94269 1.58938 1.08674 1.55651 1.14673 0.94740 0.92557 0.92776 0.92540 0.95606 0.89426 0.93197 0.84506 0.85621 0.85146 0.91570 0.92985 0.85040 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.90 6.85 37.16 0.25 -3.64 16 2 C 0.19 4.16 1.43 -68.86 -0.10 4.06 16 3 H 0.04 0.86 5.58 -51.93 -0.29 0.57 16 4 C -0.51 -13.10 8.45 -34.44 -0.29 -13.39 16 5 H 0.08 2.29 7.17 -52.49 -0.38 1.91 16 6 C 0.08 2.11 5.34 -17.82 -0.10 2.02 16 7 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 8 Si 0.86 20.28 25.73 -169.99 -4.37 15.90 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.25 -5.74 5.45 56.52 0.31 -5.43 16 12 N -0.50 -9.37 3.72 -172.66 -0.64 -10.01 16 13 C 0.03 0.59 8.44 60.07 0.51 1.10 16 14 C 0.12 2.05 4.66 -83.77 -0.39 1.66 16 15 C -0.15 -2.29 7.28 -39.39 -0.29 -2.58 16 16 C -0.11 -1.53 9.82 -39.58 -0.39 -1.92 16 17 C -0.05 -0.68 6.32 -39.48 -0.25 -0.93 16 18 Cl -0.09 -1.08 28.95 -51.86 -1.50 -2.58 16 19 C -0.09 -1.33 9.44 -39.58 -0.37 -1.70 16 20 C -0.06 -0.91 5.41 -104.42 -0.56 -1.47 16 21 C 0.11 1.73 6.54 -4.97 -0.03 1.70 16 22 N -0.85 -13.65 9.61 -11.41 -0.11 -13.76 16 23 H 0.03 0.63 5.38 -51.93 -0.28 0.36 16 24 H 0.06 1.22 4.94 -51.93 -0.26 0.96 16 25 H 0.05 1.05 5.98 -51.92 -0.31 0.74 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.42 5.11 -51.93 -0.27 0.16 16 28 H 0.09 1.70 6.63 -51.93 -0.34 1.35 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.14 2.11 5.01 -52.49 -0.26 1.85 16 31 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.13 1.66 8.03 -52.49 -0.42 1.24 16 33 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 34 H 0.05 0.83 7.80 -51.93 -0.40 0.43 16 35 H 0.34 4.74 9.08 -39.29 -0.36 4.39 16 36 H 0.36 6.65 7.24 -39.29 -0.28 6.37 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -27.19 292.07 -7.80 -34.99 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.34 Total: 11.05 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.01 Total: -15.09 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.02 Total: -48.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.37 Total: 15.90 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.19 -7.80 -34.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723156881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.075 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds