Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50711 * 109.47087 * 240.00274 * 2 1 3 5 5 H 1.07999 * 119.99497 * 245.04168 * 4 2 1 6 6 C 1.37871 * 119.99813 * 65.04035 * 4 2 1 7 7 N 1.31520 * 120.00015 * 193.55630 * 6 4 2 8 8 Si 1.86797 * 120.00416 * 13.55107 * 6 4 2 9 9 H 1.48498 * 109.47285 * 94.16314 * 8 6 4 10 10 H 1.48494 * 109.47422 * 214.16574 * 8 6 4 11 11 H 1.48508 * 109.47034 * 334.16384 * 8 6 4 12 12 N 1.46904 * 109.47251 * 120.00345 * 2 1 3 13 13 C 1.46901 * 111.00035 * 54.07100 * 12 2 1 14 14 C 1.39739 * 110.99549 * 290.11456 * 12 2 1 15 15 C 1.38919 * 120.06059 * 70.04654 * 14 12 2 16 16 C 1.38084 * 119.93573 * 179.97438 * 15 14 12 17 17 C 1.38399 * 120.06408 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.94032 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.12463 * 359.74557 * 17 16 15 20 20 C 1.38128 * 120.05727 * 0.50664 * 19 17 16 21 21 C 1.50704 * 120.03034 * 179.76911 * 20 19 17 22 22 N 1.46902 * 109.47290 * 259.72208 * 21 20 19 23 23 H 1.08996 * 109.46867 * 307.80983 * 1 2 3 24 24 H 1.08996 * 109.47152 * 67.81615 * 1 2 3 25 25 H 1.09009 * 109.47125 * 187.81176 * 1 2 3 26 26 H 0.96993 * 120.00083 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.46674 * 295.17791 * 13 12 2 28 28 H 1.09002 * 109.46983 * 55.17838 * 13 12 2 29 29 H 1.08993 * 109.46833 * 175.17706 * 13 12 2 30 30 H 1.08000 * 120.03343 * 0.02562 * 15 14 12 31 31 H 1.08008 * 119.97085 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.97064 * 180.25270 * 19 17 16 33 33 H 1.09000 * 109.47086 * 19.72649 * 21 20 19 34 34 H 1.09000 * 109.47161 * 139.72136 * 21 20 19 35 35 H 1.00903 * 110.99966 * 179.97438 * 22 21 20 36 36 H 1.00899 * 110.99945 * 303.95538 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5844 -1.6335 -1.1335 6 6 1.7871 -0.1818 -2.4801 7 7 1.9818 -0.9153 -3.5542 8 14 1.1781 1.5762 -2.6475 9 1 2.3348 2.4825 -2.8614 10 1 0.2537 1.6717 -3.8057 11 1 0.4616 1.9720 -1.4084 12 7 2.0197 -0.6926 1.1994 13 6 1.4365 -2.0366 1.3062 14 6 1.7636 0.0575 2.3503 15 6 0.4602 0.2092 2.8063 16 6 0.2101 0.9505 3.9441 17 6 1.2565 1.5424 4.6298 18 17 0.9384 2.4743 6.0596 19 6 2.5561 1.3890 4.1807 20 6 2.8116 0.6530 3.0401 21 6 4.2269 0.4906 2.5485 22 7 4.4718 1.4268 1.4432 23 1 -0.3633 0.6300 0.8119 24 1 -0.3633 0.3880 -0.9516 25 1 -0.3634 -1.0182 0.1397 26 1 1.8096 -0.5433 -4.4333 27 1 0.3595 -1.9547 1.4528 28 1 1.6374 -2.5936 0.3911 29 1 1.8799 -2.5587 2.1541 30 1 -0.3567 -0.2528 2.2719 31 1 -0.8030 1.0685 4.2994 32 1 3.3711 1.8487 4.7200 33 1 4.9206 0.7002 3.3627 34 1 4.3751 -0.5311 2.1988 35 1 5.4150 1.3377 1.0961 36 1 3.7995 1.2954 0.7024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723156881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = 19.279267 kcal Electronic energy + Delta-G solvation = -18966.288814 eV Core-core repulsion = 16089.871305 eV Total energy + Delta-G solvation = -2876.417509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33254 -38.45793 -37.22331 -35.55050 -34.69806 -31.97665 -31.61178 -30.04204 -27.43970 -26.82438 -25.63529 -23.32354 -22.42398 -20.89415 -18.78116 -17.93882 -17.35492 -17.04004 -16.54737 -16.12302 -15.64939 -15.38184 -15.22354 -15.05655 -14.35908 -14.23079 -14.03464 -13.57063 -13.38047 -13.23327 -13.16947 -12.93425 -12.66225 -12.38624 -12.27456 -12.07478 -11.96635 -11.71877 -11.43848 -11.13575 -10.57686 -9.93172 -9.64252 -9.35122 -9.11603 -8.27825 -6.26287 0.14324 0.30821 1.16552 1.33449 1.40801 1.46475 2.35162 2.57272 3.06470 3.12925 3.78386 3.86219 4.03354 4.23750 4.26480 4.41548 4.48065 4.49082 4.61316 4.67713 4.73433 4.77899 4.85417 4.98231 5.09089 5.18039 5.20881 5.28053 5.41887 5.48070 5.62474 5.77084 6.07072 6.26414 6.32285 6.61227 6.78434 6.80266 7.36969 8.88073 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.006045 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.721618 B = 4630.854445 C = 4781.062838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.200 3.800 3 H 0.030 0.970 4 C -0.500 4.500 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.939 5.939 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.234 1.234 12 N -0.501 5.501 13 C 0.038 3.962 14 C 0.096 3.904 15 C -0.150 4.150 16 C -0.103 4.103 17 C -0.048 4.048 18 Cl -0.068 7.068 19 C -0.090 4.090 20 C -0.066 4.066 21 C 0.116 3.884 22 N -0.850 5.850 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.264 0.736 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.346 0.654 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 4.564 16.902 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.094 3.906 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.579 5.579 8 Si 0.742 3.258 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.157 1.157 12 N -0.221 5.221 13 C -0.109 4.109 14 C 0.001 3.999 15 C -0.171 4.171 16 C -0.123 4.123 17 C -0.074 4.074 18 Cl -0.039 7.039 19 C -0.110 4.110 20 C -0.067 4.067 21 C -0.014 4.014 22 N -0.380 5.380 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.159 0.841 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.365 5.135 17.310 18.107 hybrid contribution -0.924 -0.248 -1.300 1.614 sum -2.289 4.887 16.010 16.895 Atomic orbital electron populations 1.22994 0.99641 1.01251 1.00684 1.19461 0.90375 0.93664 0.87137 0.95217 1.20974 1.34648 1.08742 0.89476 0.93824 1.25541 0.95450 1.00738 0.95439 1.70066 1.51349 1.37685 0.98802 0.86329 0.78803 0.81731 0.78892 1.20430 1.21630 1.15739 1.59751 1.59383 1.02714 1.00265 1.22317 0.97379 0.89336 1.01854 1.19205 0.92230 0.95856 0.92648 1.22052 0.97437 1.00477 0.97085 1.21096 0.99364 0.97174 0.94626 1.20921 0.94859 0.99912 0.91737 1.98349 1.95920 1.71979 1.37675 1.20971 0.95674 0.98211 0.96102 1.19811 0.95612 0.97012 0.94314 1.20474 0.91669 0.94738 0.94546 1.58979 1.08832 1.55900 1.14336 0.92355 0.93923 0.92278 0.92662 0.94425 0.92236 0.91299 0.84302 0.83332 0.83337 0.89110 0.94486 0.84070 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.34 6.85 71.98 0.49 -6.85 16 2 C 0.20 8.59 1.43 44.17 0.06 8.65 16 3 H 0.03 1.35 5.58 -2.39 -0.01 1.33 16 4 C -0.50 -26.30 8.45 25.60 0.22 -26.09 16 5 H 0.04 2.58 7.17 -2.91 -0.02 2.56 16 6 C 0.03 1.46 5.34 84.65 0.45 1.91 16 7 N -0.94 -56.00 13.96 21.45 0.30 -55.71 16 8 Si 0.92 42.07 25.73 68.60 1.76 43.83 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.23 -9.87 5.45 99.48 0.54 -9.33 16 12 N -0.50 -18.69 3.72 -700.17 -2.60 -21.30 16 13 C 0.04 1.32 8.44 127.69 1.08 2.40 16 14 C 0.10 3.12 4.66 38.20 0.18 3.30 16 15 C -0.15 -4.35 7.28 22.40 0.16 -4.18 16 16 C -0.10 -2.57 9.82 22.27 0.22 -2.35 16 17 C -0.05 -1.18 6.32 22.34 0.14 -1.04 16 18 Cl -0.07 -1.46 28.95 -2.72 -0.08 -1.54 16 19 C -0.09 -2.32 9.44 22.27 0.21 -2.11 16 20 C -0.07 -1.96 5.41 -19.74 -0.11 -2.07 16 21 C 0.12 3.33 6.54 85.56 0.56 3.89 16 22 N -0.85 -26.49 9.61 -190.00 -1.83 -28.32 16 23 H 0.06 2.01 5.38 -2.39 -0.01 1.99 16 24 H 0.04 1.77 4.94 -2.39 -0.01 1.76 16 25 H 0.06 2.23 5.98 -2.38 -0.01 2.21 16 26 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.04 1.20 5.11 -2.39 -0.01 1.19 16 28 H 0.06 2.38 6.63 -2.39 -0.02 2.37 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.14 3.90 5.01 -2.91 -0.01 3.88 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.15 3.23 8.03 -2.91 -0.02 3.21 16 33 H 0.09 2.13 8.00 -2.39 -0.02 2.11 16 34 H 0.04 1.17 7.80 -2.39 -0.02 1.15 16 35 H 0.35 9.46 9.08 -89.69 -0.81 8.65 16 36 H 0.34 12.58 7.24 -89.69 -0.65 11.93 16 Total: -1.00 -58.72 292.07 0.72 -57.99 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.50 Total: 29.57 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 3.67 Total: -24.54 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.13 Total: -105.32 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.76 Total: 43.83 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -58.72 0.72 -57.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723156881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.270 kcal (2) G-P(sol) polarization free energy of solvation -58.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds