Wall clock time and date at job start Mon Mar 30 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46868 * 2 1 4 4 C 1.50704 * 109.46954 * 119.99297 * 2 1 3 5 5 H 1.07995 * 119.99944 * 120.00061 * 4 2 1 6 6 C 1.37876 * 119.99642 * 300.00376 * 4 2 1 7 7 N 1.31523 * 119.99533 * 179.97438 * 6 4 2 8 8 Si 1.86790 * 120.00528 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47200 * 90.00046 * 8 6 4 10 10 H 1.48503 * 109.47492 * 209.99866 * 8 6 4 11 11 H 1.48500 * 109.47185 * 330.00134 * 8 6 4 12 12 N 1.46893 * 109.47288 * 239.99790 * 2 1 3 13 13 C 1.46904 * 110.99823 * 178.47564 * 12 2 1 14 14 C 1.39739 * 111.00692 * 54.51653 * 12 2 1 15 15 C 1.38923 * 120.05553 * 57.17445 * 14 12 2 16 16 C 1.38093 * 119.93269 * 179.97438 * 15 14 12 17 17 C 1.38402 * 120.06301 * 0.25773 * 16 15 14 18 18 Cl 1.73599 * 119.93651 * 179.72525 * 17 16 15 19 19 C 1.38357 * 120.12226 * 359.49068 * 17 16 15 20 20 C 1.38134 * 120.06192 * 0.50840 * 19 17 16 21 21 C 1.50696 * 120.02798 * 179.72447 * 20 19 17 22 22 N 1.46898 * 109.47231 * 261.57660 * 21 20 19 23 23 H 1.09005 * 109.46807 * 67.47327 * 1 2 3 24 24 H 1.08992 * 109.47226 * 187.47361 * 1 2 3 25 25 H 1.09000 * 109.47365 * 307.48157 * 1 2 3 26 26 H 0.96995 * 119.99750 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47022 * 296.81608 * 13 12 2 28 28 H 1.08993 * 109.47682 * 56.81877 * 13 12 2 29 29 H 1.08999 * 109.47182 * 176.82318 * 13 12 2 30 30 H 1.07998 * 120.03257 * 359.96648 * 15 14 12 31 31 H 1.08004 * 119.96393 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.96883 * 180.25645 * 19 17 16 33 33 H 1.08997 * 109.47860 * 21.58012 * 21 20 19 34 34 H 1.09002 * 109.47334 * 141.57877 * 21 20 19 35 35 H 1.00899 * 111.00202 * 182.76396 * 22 21 20 36 36 H 1.00903 * 110.99768 * 306.71135 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4827 7 7 2.1371 -0.8592 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8747 2.6991 10 1 0.9769 1.9957 3.9069 11 1 0.8490 2.1774 1.4921 12 7 2.0197 -0.6925 -1.1993 13 6 3.4878 -0.6805 -1.2516 14 6 1.4728 -0.1350 -2.3581 15 6 1.6454 1.2167 -2.6283 16 6 1.1043 1.7650 -3.7744 17 6 0.3860 0.9702 -4.6508 18 17 -0.2989 1.6643 -6.0870 19 6 0.2170 -0.3773 -4.3867 20 6 0.7561 -0.9311 -3.2418 21 6 0.5662 -2.3976 -2.9519 22 7 -0.5437 -2.5699 -2.0051 23 1 -0.3633 0.3937 -0.9493 24 1 -0.3633 -1.0189 0.1337 25 1 -0.3634 0.6253 0.8155 26 1 1.9030 -0.5276 4.4376 27 1 3.8401 0.3479 -1.3309 28 1 3.8874 -1.1325 -0.3439 29 1 3.8251 -1.2480 -2.1189 30 1 2.2022 1.8382 -1.9426 31 1 1.2379 2.8159 -3.9848 32 1 -0.3405 -0.9961 -5.0744 33 1 0.3385 -2.9248 -3.8783 34 1 1.4800 -2.8036 -2.5181 35 1 -0.6622 -3.5414 -1.7597 36 1 -0.4077 -2.0030 -1.1815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723156883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:34 Heat of formation + Delta-G solvation = 34.791858 kcal Electronic energy + Delta-G solvation = -18979.209366 eV Core-core repulsion = 16103.464534 eV Total energy + Delta-G solvation = -2875.744832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01245 -37.06984 -35.97250 -34.39162 -32.85670 -30.63060 -30.38271 -29.07957 -25.66401 -24.54651 -24.36603 -22.50537 -20.88153 -19.65025 -17.05562 -16.67733 -15.76027 -15.71559 -15.26348 -14.79189 -14.32173 -14.05870 -13.63615 -13.42424 -13.08912 -12.97223 -12.66613 -12.27510 -12.16381 -11.93442 -11.77180 -11.32907 -11.06185 -10.96985 -10.72221 -10.68029 -10.64120 -10.28014 -9.63265 -9.29260 -8.82591 -8.68151 -8.37119 -8.14557 -7.72058 -6.18852 -4.18997 1.30291 1.42783 2.21882 3.19567 3.28753 3.31081 3.72746 4.29178 4.46235 4.88223 4.98079 5.12682 5.18928 5.38161 5.42509 5.63529 5.71087 5.91304 5.98010 6.02584 6.11386 6.22186 6.28620 6.32150 6.35801 6.44830 6.59084 6.68423 6.73080 6.88996 7.07553 7.43175 7.52950 7.69612 7.88795 7.97554 8.50751 8.86239 9.42156 10.93498 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.006139 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.573090 B = 4559.614584 C = 4921.850811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.186 3.814 3 H 0.005 0.995 4 C -0.510 4.510 5 H 0.084 0.916 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.500 5.500 13 C 0.041 3.959 14 C 0.126 3.874 15 C -0.143 4.143 16 C -0.103 4.103 17 C -0.049 4.049 18 Cl -0.085 7.085 19 C -0.090 4.090 20 C -0.060 4.060 21 C 0.115 3.885 22 N -0.852 5.852 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.266 0.734 27 H 0.020 0.980 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.336 0.664 36 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 1.939 -14.731 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 H 0.022 0.978 4 C -0.548 4.548 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.195 1.195 12 N -0.222 5.222 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.164 4.164 16 C -0.123 4.123 17 C -0.075 4.075 18 Cl -0.056 7.056 19 C -0.109 4.109 20 C -0.061 4.061 21 C -0.015 4.015 22 N -0.386 5.386 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.810 1.785 -15.153 15.515 hybrid contribution 0.258 1.505 0.770 1.710 sum -2.552 3.291 -14.383 14.974 Atomic orbital electron populations 1.22302 0.98277 1.01223 0.98984 1.19808 0.91521 0.92774 0.87810 0.97790 1.20867 1.32454 1.13823 0.87609 0.89814 1.24871 0.95648 0.96502 0.95764 1.69867 1.45294 1.40096 0.97954 0.86947 0.81016 0.83859 0.76958 1.20328 1.22291 1.19467 1.59784 1.07694 1.54746 0.99947 1.22287 0.86188 0.99439 1.02644 1.19092 0.94953 0.90676 0.92246 1.21751 1.01111 0.96407 0.97082 1.20857 0.97895 0.99648 0.93874 1.20778 1.02363 0.93878 0.90515 1.98337 1.84085 1.84853 1.38354 1.20798 0.99683 0.92785 0.97676 1.19697 0.96794 0.96409 0.93233 1.20417 0.93865 0.90798 0.96439 1.59100 1.44791 1.13459 1.21242 0.94528 0.91929 0.93714 0.92448 0.96162 0.89217 0.93080 0.85342 0.85539 0.85080 0.91550 0.93176 0.85197 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 7.56 37.16 0.28 -2.91 16 2 C 0.19 4.13 1.29 -68.87 -0.09 4.04 16 3 H 0.00 0.11 6.24 -51.92 -0.32 -0.22 16 4 C -0.51 -13.27 8.47 -34.44 -0.29 -13.56 16 5 H 0.08 2.37 7.04 -52.49 -0.37 2.00 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 8 Si 0.88 21.13 24.30 -169.99 -4.13 17.00 16 9 H -0.28 -6.52 6.94 56.52 0.39 -6.12 16 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.50 -9.53 3.72 -172.66 -0.64 -10.17 16 13 C 0.04 0.73 9.17 60.07 0.55 1.28 16 14 C 0.13 2.15 3.01 -83.77 -0.25 1.90 16 15 C -0.14 -2.31 8.46 -39.38 -0.33 -2.64 16 16 C -0.10 -1.47 9.82 -39.57 -0.39 -1.86 16 17 C -0.05 -0.68 6.32 -39.48 -0.25 -0.93 16 18 Cl -0.08 -1.05 28.95 -51.86 -1.50 -2.55 16 19 C -0.09 -1.27 9.45 -39.58 -0.37 -1.65 16 20 C -0.06 -0.93 5.38 -104.43 -0.56 -1.50 16 21 C 0.12 1.70 6.57 -4.98 -0.03 1.67 16 22 N -0.85 -13.23 9.63 -11.41 -0.11 -13.34 16 23 H 0.04 0.72 6.66 -51.93 -0.35 0.38 16 24 H 0.06 1.32 5.92 -51.93 -0.31 1.01 16 25 H 0.04 0.99 3.51 -51.93 -0.18 0.80 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.34 7.54 -51.93 -0.39 -0.05 16 28 H 0.09 1.74 6.47 -51.93 -0.34 1.41 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.13 2.08 7.08 -52.49 -0.37 1.71 16 31 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 32 H 0.13 1.64 8.05 -52.48 -0.42 1.21 16 33 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.05 0.78 7.74 -51.93 -0.40 0.38 16 35 H 0.34 4.55 9.08 -39.29 -0.36 4.19 16 36 H 0.36 6.31 5.43 -39.29 -0.21 6.10 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -27.57 295.38 -7.46 -35.03 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.46 Total: 9.09 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.84 Total: -14.22 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.02 Total: -48.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.13 Total: 17.00 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.57 -7.46 -35.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723156883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.825 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds