Wall clock time and date at job start Mon Mar 30 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46868 * 2 1 4 4 C 1.50704 * 109.46954 * 119.99297 * 2 1 3 5 5 H 1.07995 * 119.99944 * 120.00061 * 4 2 1 6 6 C 1.37876 * 119.99642 * 300.00376 * 4 2 1 7 7 N 1.31523 * 119.99533 * 179.97438 * 6 4 2 8 8 Si 1.86790 * 120.00528 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47200 * 90.00046 * 8 6 4 10 10 H 1.48503 * 109.47492 * 209.99866 * 8 6 4 11 11 H 1.48500 * 109.47185 * 330.00134 * 8 6 4 12 12 N 1.46893 * 109.47288 * 239.99790 * 2 1 3 13 13 C 1.46904 * 110.99823 * 178.47564 * 12 2 1 14 14 C 1.39739 * 111.00692 * 54.51653 * 12 2 1 15 15 C 1.38923 * 120.05553 * 57.17445 * 14 12 2 16 16 C 1.38093 * 119.93269 * 179.97438 * 15 14 12 17 17 C 1.38402 * 120.06301 * 0.25773 * 16 15 14 18 18 Cl 1.73599 * 119.93651 * 179.72525 * 17 16 15 19 19 C 1.38357 * 120.12226 * 359.49068 * 17 16 15 20 20 C 1.38134 * 120.06192 * 0.50840 * 19 17 16 21 21 C 1.50696 * 120.02798 * 179.72447 * 20 19 17 22 22 N 1.46898 * 109.47231 * 261.57660 * 21 20 19 23 23 H 1.09005 * 109.46807 * 67.47327 * 1 2 3 24 24 H 1.08992 * 109.47226 * 187.47361 * 1 2 3 25 25 H 1.09000 * 109.47365 * 307.48157 * 1 2 3 26 26 H 0.96995 * 119.99750 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47022 * 296.81608 * 13 12 2 28 28 H 1.08993 * 109.47682 * 56.81877 * 13 12 2 29 29 H 1.08999 * 109.47182 * 176.82318 * 13 12 2 30 30 H 1.07998 * 120.03257 * 359.96648 * 15 14 12 31 31 H 1.08004 * 119.96393 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.96883 * 180.25645 * 19 17 16 33 33 H 1.08997 * 109.47860 * 21.58012 * 21 20 19 34 34 H 1.09002 * 109.47334 * 141.57877 * 21 20 19 35 35 H 1.00899 * 111.00202 * 182.76396 * 22 21 20 36 36 H 1.00903 * 110.99768 * 306.71135 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4827 7 7 2.1371 -0.8592 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8747 2.6991 10 1 0.9769 1.9957 3.9069 11 1 0.8490 2.1774 1.4921 12 7 2.0197 -0.6925 -1.1993 13 6 3.4878 -0.6805 -1.2516 14 6 1.4728 -0.1350 -2.3581 15 6 1.6454 1.2167 -2.6283 16 6 1.1043 1.7650 -3.7744 17 6 0.3860 0.9702 -4.6508 18 17 -0.2989 1.6643 -6.0870 19 6 0.2170 -0.3773 -4.3867 20 6 0.7561 -0.9311 -3.2418 21 6 0.5662 -2.3976 -2.9519 22 7 -0.5437 -2.5699 -2.0051 23 1 -0.3633 0.3937 -0.9493 24 1 -0.3633 -1.0189 0.1337 25 1 -0.3634 0.6253 0.8155 26 1 1.9030 -0.5276 4.4376 27 1 3.8401 0.3479 -1.3309 28 1 3.8874 -1.1325 -0.3439 29 1 3.8251 -1.2480 -2.1189 30 1 2.2022 1.8382 -1.9426 31 1 1.2379 2.8159 -3.9848 32 1 -0.3405 -0.9961 -5.0744 33 1 0.3385 -2.9248 -3.8783 34 1 1.4800 -2.8036 -2.5181 35 1 -0.6622 -3.5414 -1.7597 36 1 -0.4077 -2.0030 -1.1815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723156883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:33 Heat of formation + Delta-G solvation = 16.606694 kcal Electronic energy + Delta-G solvation = -18979.997934 eV Core-core repulsion = 16103.464534 eV Total energy + Delta-G solvation = -2876.533400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29558 -38.36319 -37.18257 -35.55869 -34.77805 -32.33143 -31.62135 -30.38049 -27.38841 -26.11640 -25.60737 -23.92423 -22.17139 -21.15232 -18.91088 -17.88550 -17.31234 -17.06513 -16.73075 -16.09123 -15.77986 -15.47988 -15.07528 -14.96802 -14.41490 -14.28548 -14.09544 -13.91272 -13.60955 -13.25087 -13.17814 -12.76824 -12.45715 -12.37585 -12.35541 -12.13681 -12.02360 -11.77980 -11.47021 -11.23070 -10.75752 -9.97951 -9.56919 -9.40231 -9.19024 -8.29947 -6.32856 0.11322 0.27658 1.14783 1.29495 1.33568 1.41955 2.29125 2.54916 2.99142 3.07548 3.76160 3.83577 4.01419 4.18951 4.22013 4.38762 4.44485 4.49756 4.57872 4.65918 4.69776 4.75073 4.82955 4.92371 4.97797 5.13103 5.17847 5.22657 5.35503 5.44794 5.59646 5.74656 5.98747 6.25785 6.31077 6.63799 6.72613 6.76046 7.31720 8.85867 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.006139 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.573090 B = 4559.614584 C = 4921.850811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.194 3.806 3 H -0.003 1.003 4 C -0.501 4.501 5 H 0.049 0.951 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.936 3.064 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.254 1.254 12 N -0.502 5.502 13 C 0.044 3.956 14 C 0.103 3.897 15 C -0.152 4.152 16 C -0.099 4.099 17 C -0.047 4.047 18 Cl -0.066 7.066 19 C -0.086 4.086 20 C -0.065 4.065 21 C 0.116 3.884 22 N -0.855 5.855 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.345 0.655 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 3.075 -17.194 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.087 3.913 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.067 0.933 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.764 3.236 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.179 1.179 12 N -0.223 5.223 13 C -0.103 4.103 14 C 0.008 3.992 15 C -0.172 4.172 16 C -0.118 4.118 17 C -0.074 4.074 18 Cl -0.037 7.037 19 C -0.106 4.106 20 C -0.066 4.066 21 C -0.015 4.015 22 N -0.388 5.388 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.164 2.912 -17.660 18.377 hybrid contribution 0.719 1.102 1.386 1.910 sum -3.446 4.013 -16.275 17.113 Atomic orbital electron populations 1.22168 0.97145 1.01127 0.99474 1.19553 0.92216 0.91834 0.87658 0.98579 1.21065 1.31014 1.12510 0.89384 0.93330 1.25597 0.97127 0.99355 0.95505 1.70003 1.47476 1.42190 0.98532 0.86050 0.79704 0.80719 0.77120 1.19302 1.22627 1.17861 1.59614 1.08161 1.54658 0.99895 1.22239 0.85860 0.99868 1.02286 1.19114 0.96560 0.91517 0.92022 1.21739 1.01662 0.95934 0.97896 1.21043 0.97055 1.00726 0.93005 1.20898 1.01649 0.93903 0.90939 1.98351 1.83691 1.84558 1.37124 1.21000 0.99121 0.93172 0.97261 1.19797 0.96657 0.96669 0.93512 1.20474 0.93101 0.90721 0.97159 1.59130 1.44995 1.13991 1.20660 0.92932 0.92118 0.94420 0.92496 0.95629 0.91884 0.90781 0.85889 0.83444 0.83075 0.89051 0.94545 0.84182 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 7.56 71.98 0.54 -5.29 16 2 C 0.19 8.53 1.29 44.17 0.06 8.59 16 3 H 0.00 -0.15 6.24 -2.38 -0.01 -0.16 16 4 C -0.50 -26.77 8.47 25.60 0.22 -26.55 16 5 H 0.05 2.88 7.04 -2.91 -0.02 2.86 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 8 Si 0.94 43.45 24.30 68.60 1.67 45.12 16 9 H -0.27 -11.92 6.94 99.48 0.69 -11.23 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.43 16 12 N -0.50 -18.96 3.72 -700.18 -2.60 -21.56 16 13 C 0.04 1.57 9.17 127.69 1.17 2.74 16 14 C 0.10 3.36 3.01 38.20 0.12 3.47 16 15 C -0.15 -4.59 8.46 22.40 0.19 -4.40 16 16 C -0.10 -2.52 9.82 22.27 0.22 -2.30 16 17 C -0.05 -1.16 6.32 22.34 0.14 -1.02 16 18 Cl -0.07 -1.40 28.95 -2.72 -0.08 -1.48 16 19 C -0.09 -2.16 9.45 22.27 0.21 -1.95 16 20 C -0.06 -1.88 5.38 -19.74 -0.11 -1.99 16 21 C 0.12 3.19 6.57 85.56 0.56 3.75 16 22 N -0.85 -25.20 9.63 -190.02 -1.83 -27.03 16 23 H 0.05 1.98 6.66 -2.38 -0.02 1.96 16 24 H 0.06 2.51 5.92 -2.39 -0.01 2.50 16 25 H 0.04 1.59 3.51 -2.39 -0.01 1.58 16 26 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.03 0.86 7.54 -2.39 -0.02 0.84 16 28 H 0.06 2.55 6.47 -2.39 -0.02 2.54 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.12 3.80 7.08 -2.91 -0.02 3.78 16 31 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.15 3.16 8.05 -2.91 -0.02 3.13 16 33 H 0.09 2.04 8.02 -2.39 -0.02 2.02 16 34 H 0.04 1.10 7.74 -2.39 -0.02 1.08 16 35 H 0.35 8.90 9.08 -89.69 -0.81 8.09 16 36 H 0.34 11.81 5.43 -89.69 -0.49 11.32 16 Total: -1.00 -59.12 295.38 0.98 -58.14 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.26 Total: 26.30 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.78 Total: -23.24 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.13 Total: -104.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.67 Total: 45.12 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -59.12 0.98 -58.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723156883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.747 kcal (2) G-P(sol) polarization free energy of solvation -59.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds