Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47128 * 2 1 4 4 C 1.46900 * 111.00113 * 189.20123 * 3 2 1 5 5 C 1.50697 * 109.46952 * 75.25312 * 4 3 2 6 6 H 1.08001 * 119.99830 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99891 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47181 * 59.99889 * 9 7 5 11 11 H 1.48500 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46718 * 299.99945 * 9 7 5 13 13 C 1.39744 * 110.99692 * 65.25139 * 3 2 1 14 14 C 1.38919 * 120.06301 * 55.46953 * 13 3 2 15 15 C 1.38084 * 119.93550 * 179.69752 * 14 13 3 16 16 C 1.38399 * 120.06630 * 0.60573 * 15 14 13 17 17 Cl 1.73599 * 119.94212 * 179.69733 * 16 15 14 18 18 C 1.38356 * 120.12079 * 359.67411 * 16 15 14 19 19 C 1.38130 * 120.06127 * 0.02562 * 18 16 15 20 20 C 1.50704 * 120.03125 * 179.97438 * 19 18 16 21 21 N 1.46906 * 109.47297 * 263.02934 * 20 19 18 22 22 H 1.08994 * 109.47355 * 291.83293 * 1 2 3 23 23 H 1.09004 * 109.47313 * 51.83250 * 1 2 3 24 24 H 1.09008 * 109.47264 * 171.83013 * 1 2 3 25 25 H 1.09006 * 109.47028 * 240.00444 * 2 1 3 26 26 H 1.08998 * 109.47695 * 120.00357 * 2 1 3 27 27 H 1.08997 * 109.47165 * 315.24948 * 4 3 2 28 28 H 1.09001 * 109.47153 * 195.25316 * 4 3 2 29 29 H 0.97003 * 119.99881 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.02760 * 359.97438 * 14 13 3 31 31 H 1.08009 * 119.96747 * 180.28216 * 15 14 13 32 32 H 1.08001 * 119.97328 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.46891 * 23.02738 * 20 19 18 34 34 H 1.09004 * 109.47129 * 143.03165 * 20 19 18 35 35 H 1.00889 * 111.00288 * 180.28332 * 21 20 19 36 36 H 1.00898 * 110.99719 * 304.24195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4715 1.4301 -0.2193 5 6 3.7688 1.1578 -1.6713 6 1 2.9602 0.9696 -2.3620 7 6 5.0732 1.1489 -2.1180 8 7 6.0579 1.3776 -1.2767 9 14 5.4418 0.8120 -3.9181 10 1 4.7814 1.8419 -4.7597 11 1 6.9095 0.8575 -4.1397 12 1 4.9275 -0.5318 -4.2855 13 6 1.6716 2.0392 1.1848 14 6 2.0379 1.4993 2.4113 15 6 1.6980 2.1511 3.5802 16 6 0.9823 3.3346 3.5312 17 17 0.5500 4.1473 5.0031 18 6 0.6112 3.8716 2.3113 19 6 0.9538 3.2271 1.1387 20 6 0.5487 3.8123 -0.1897 21 7 -0.6853 3.1646 -0.6543 22 1 -0.3634 0.3822 0.9539 23 1 -0.3634 0.6351 -0.8080 24 1 -0.3634 -1.0173 -0.1460 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.9559 0.6743 0.3988 28 1 3.8492 2.4164 0.0502 29 1 6.9756 1.3710 -1.5909 30 1 2.5918 0.5729 2.4503 31 1 1.9865 1.7341 4.5339 32 1 0.0531 4.7956 2.2759 33 1 0.3771 4.8829 -0.0779 34 1 1.3428 3.6456 -0.9176 35 1 -0.9753 3.5367 -1.5461 36 1 -0.5729 2.1629 -0.6997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723157322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = 20.716707 kcal Electronic energy + Delta-G solvation = -18650.188534 eV Core-core repulsion = 15773.833357 eV Total energy + Delta-G solvation = -2876.355177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82978 -36.89452 -35.78389 -34.36558 -32.77494 -30.73601 -30.32886 -28.99000 -26.16880 -24.55246 -23.08395 -22.46055 -20.89935 -19.92074 -16.80614 -16.49123 -15.77005 -15.58222 -15.20039 -14.65640 -14.22482 -14.06023 -14.00413 -13.24778 -13.02270 -12.95962 -12.48161 -12.28318 -12.06308 -11.71086 -11.31542 -11.19443 -11.12865 -10.99523 -10.78791 -10.61612 -10.55413 -10.48284 -10.03888 -9.45328 -8.71881 -8.53427 -8.34125 -8.09652 -7.56616 -6.12319 -4.15248 1.43620 1.54944 2.32149 3.26620 3.31736 3.33569 3.85432 4.31721 4.64430 4.96131 5.07828 5.15877 5.23035 5.44613 5.50572 5.61508 5.66876 5.79414 5.83801 6.02082 6.06109 6.20825 6.28177 6.39794 6.46255 6.55668 6.59811 6.78713 6.97142 7.14528 7.21331 7.44388 7.70712 7.80957 7.93593 8.03922 8.43398 8.91158 9.49431 10.97956 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.005410 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.297606 B = 5174.776762 C = 5529.906139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 N -0.508 5.508 4 C 0.201 3.799 5 C -0.510 4.510 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.131 3.869 14 C -0.143 4.143 15 C -0.102 4.102 16 C -0.051 4.051 17 Cl -0.087 7.087 18 C -0.090 4.090 19 C -0.058 4.058 20 C 0.110 3.890 21 N -0.850 5.850 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.028 0.972 27 H -0.001 1.001 28 H 0.030 0.970 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.335 0.665 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 1.794 6.521 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 N -0.230 5.230 4 C 0.078 3.922 5 C -0.549 4.549 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.035 3.965 14 C -0.164 4.164 15 C -0.122 4.122 16 C -0.077 4.077 17 Cl -0.059 7.059 18 C -0.109 4.109 19 C -0.060 4.060 20 C -0.020 4.020 21 N -0.384 5.384 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.046 0.954 27 H 0.017 0.983 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.130 2.411 6.885 13.307 hybrid contribution 1.405 -0.848 -0.828 1.838 sum -9.724 1.563 6.057 11.562 Atomic orbital electron populations 1.21931 0.96244 1.00963 1.01577 1.22072 0.94255 0.89026 1.01484 1.60025 1.19098 1.14860 1.28991 1.19790 0.78133 0.97028 0.97248 1.21046 0.91991 1.48308 0.93511 0.91830 1.24981 0.96169 0.95339 0.97935 1.69946 0.99499 1.49388 1.34688 0.86543 0.77084 0.78843 0.84832 1.20173 1.21318 1.20228 1.19112 0.93955 0.93663 0.89749 1.21701 1.00947 1.01200 0.92538 1.20832 0.98488 0.94018 0.98869 1.20746 1.04127 0.96048 0.86799 1.98331 1.92271 1.79348 1.35929 1.20782 0.99905 1.00363 0.89896 1.19641 0.97155 0.94544 0.94671 1.20480 0.91885 0.96774 0.92863 1.59104 1.33587 1.11297 1.34418 0.93165 0.92090 0.92613 0.89404 0.95413 0.98298 0.95178 0.92716 0.85466 0.85644 0.85233 0.91489 0.92124 0.85330 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.01 37.15 0.33 -1.83 16 2 C 0.06 1.03 5.32 -3.83 -0.02 1.01 16 3 N -0.51 -10.04 3.50 -172.46 -0.60 -10.65 16 4 C 0.20 4.93 4.42 -4.98 -0.02 4.91 16 5 C -0.51 -13.51 8.56 -34.44 -0.29 -13.81 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.13 2.37 3.56 -83.76 -0.30 2.07 16 14 C -0.14 -2.43 8.80 -39.39 -0.35 -2.77 16 15 C -0.10 -1.55 9.82 -39.58 -0.39 -1.94 16 16 C -0.05 -0.76 6.32 -39.48 -0.25 -1.01 16 17 Cl -0.09 -1.15 28.95 -51.86 -1.50 -2.65 16 18 C -0.09 -1.37 9.45 -39.58 -0.37 -1.74 16 19 C -0.06 -0.98 5.41 -104.42 -0.56 -1.55 16 20 C 0.11 1.75 6.58 -4.97 -0.03 1.71 16 21 N -0.85 -12.25 9.61 -11.40 -0.11 -12.36 16 22 H 0.05 0.74 7.64 -51.93 -0.40 0.34 16 23 H 0.06 0.88 5.48 -51.93 -0.28 0.59 16 24 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.09 1.67 7.38 -51.93 -0.38 1.29 16 26 H 0.03 0.48 6.71 -51.93 -0.35 0.13 16 27 H 0.00 -0.02 8.01 -51.93 -0.42 -0.44 16 28 H 0.03 0.82 7.92 -51.93 -0.41 0.40 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.13 2.13 7.13 -52.49 -0.37 1.75 16 31 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16 35 H 0.34 4.15 9.08 -39.30 -0.36 3.80 16 36 H 0.35 5.19 5.25 -39.29 -0.21 4.98 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -27.73 309.56 -8.99 -36.72 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.80 Total: 6.92 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.35 Total: -13.46 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.02 Total: -48.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.73 -8.99 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723157322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.435 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds