Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47128 * 2 1 4 4 C 1.46900 * 111.00113 * 189.20123 * 3 2 1 5 5 C 1.50697 * 109.46952 * 75.25312 * 4 3 2 6 6 H 1.08001 * 119.99830 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99891 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47181 * 59.99889 * 9 7 5 11 11 H 1.48500 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46718 * 299.99945 * 9 7 5 13 13 C 1.39744 * 110.99692 * 65.25139 * 3 2 1 14 14 C 1.38919 * 120.06301 * 55.46953 * 13 3 2 15 15 C 1.38084 * 119.93550 * 179.69752 * 14 13 3 16 16 C 1.38399 * 120.06630 * 0.60573 * 15 14 13 17 17 Cl 1.73599 * 119.94212 * 179.69733 * 16 15 14 18 18 C 1.38356 * 120.12079 * 359.67411 * 16 15 14 19 19 C 1.38130 * 120.06127 * 0.02562 * 18 16 15 20 20 C 1.50704 * 120.03125 * 179.97438 * 19 18 16 21 21 N 1.46906 * 109.47297 * 263.02934 * 20 19 18 22 22 H 1.08994 * 109.47355 * 291.83293 * 1 2 3 23 23 H 1.09004 * 109.47313 * 51.83250 * 1 2 3 24 24 H 1.09008 * 109.47264 * 171.83013 * 1 2 3 25 25 H 1.09006 * 109.47028 * 240.00444 * 2 1 3 26 26 H 1.08998 * 109.47695 * 120.00357 * 2 1 3 27 27 H 1.08997 * 109.47165 * 315.24948 * 4 3 2 28 28 H 1.09001 * 109.47153 * 195.25316 * 4 3 2 29 29 H 0.97003 * 119.99881 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.02760 * 359.97438 * 14 13 3 31 31 H 1.08009 * 119.96747 * 180.28216 * 15 14 13 32 32 H 1.08001 * 119.97328 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.46891 * 23.02738 * 20 19 18 34 34 H 1.09004 * 109.47129 * 143.03165 * 20 19 18 35 35 H 1.00889 * 111.00288 * 180.28332 * 21 20 19 36 36 H 1.00898 * 110.99719 * 304.24195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4715 1.4301 -0.2193 5 6 3.7688 1.1578 -1.6713 6 1 2.9602 0.9696 -2.3620 7 6 5.0732 1.1489 -2.1180 8 7 6.0579 1.3776 -1.2767 9 14 5.4418 0.8120 -3.9181 10 1 4.7814 1.8419 -4.7597 11 1 6.9095 0.8575 -4.1397 12 1 4.9275 -0.5318 -4.2855 13 6 1.6716 2.0392 1.1848 14 6 2.0379 1.4993 2.4113 15 6 1.6980 2.1511 3.5802 16 6 0.9823 3.3346 3.5312 17 17 0.5500 4.1473 5.0031 18 6 0.6112 3.8716 2.3113 19 6 0.9538 3.2271 1.1387 20 6 0.5487 3.8123 -0.1897 21 7 -0.6853 3.1646 -0.6543 22 1 -0.3634 0.3822 0.9539 23 1 -0.3634 0.6351 -0.8080 24 1 -0.3634 -1.0173 -0.1460 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.9559 0.6743 0.3988 28 1 3.8492 2.4164 0.0502 29 1 6.9756 1.3710 -1.5909 30 1 2.5918 0.5729 2.4503 31 1 1.9865 1.7341 4.5339 32 1 0.0531 4.7956 2.2759 33 1 0.3771 4.8829 -0.0779 34 1 1.3428 3.6456 -0.9176 35 1 -0.9753 3.5367 -1.5461 36 1 -0.5729 2.1629 -0.6997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723157322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = 4.066666 kcal Electronic energy + Delta-G solvation = -18650.910534 eV Core-core repulsion = 15773.833357 eV Total energy + Delta-G solvation = -2877.077177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18330 -38.21573 -37.08438 -35.58473 -34.79581 -32.08726 -31.57713 -30.60479 -27.91360 -25.82759 -24.45289 -24.27700 -22.21174 -21.32575 -18.62561 -17.88513 -17.18937 -16.92407 -16.88348 -16.15225 -15.64252 -15.42149 -15.35874 -14.71940 -14.31299 -14.25049 -14.14533 -13.94676 -13.33341 -13.13905 -12.86211 -12.69699 -12.50670 -12.42539 -12.29346 -12.25278 -11.90703 -11.83793 -11.77939 -11.39994 -10.62373 -9.96642 -9.58143 -9.44541 -9.13144 -8.21506 -6.32208 0.13766 0.28580 1.14296 1.41489 1.43617 1.51607 2.38388 2.57260 3.09360 3.14066 3.74805 3.82221 3.96516 4.16832 4.21220 4.34349 4.37149 4.53475 4.59988 4.71491 4.82084 4.92146 4.98799 5.05568 5.08252 5.17087 5.19214 5.27214 5.35097 5.50763 5.67279 5.75738 6.05724 6.20410 6.27400 6.67034 6.75454 6.82017 7.37588 8.88851 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.005410 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.297606 B = 5174.776762 C = 5529.906139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 N -0.503 5.503 4 C 0.221 3.779 5 C -0.519 4.519 6 H 0.065 0.935 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.103 3.897 14 C -0.153 4.153 15 C -0.100 4.100 16 C -0.049 4.049 17 Cl -0.065 7.065 18 C -0.088 4.088 19 C -0.066 4.066 20 C 0.115 3.885 21 N -0.845 5.845 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.027 0.973 27 H -0.029 1.029 28 H -0.005 1.005 29 H 0.264 0.736 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.347 0.653 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 2.115 6.601 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 N -0.224 5.224 4 C 0.097 3.903 5 C -0.557 4.557 6 H 0.084 0.916 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.008 3.992 14 C -0.174 4.174 15 C -0.119 4.119 16 C -0.075 4.075 17 Cl -0.036 7.036 18 C -0.107 4.107 19 C -0.068 4.068 20 C -0.015 4.015 21 N -0.379 5.379 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.045 0.955 27 H -0.011 1.011 28 H 0.014 0.986 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.160 0.840 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.792 2.734 6.968 14.821 hybrid contribution 1.857 -0.902 -0.722 2.187 sum -10.935 1.832 6.246 12.726 Atomic orbital electron populations 1.21813 0.93274 1.02604 1.01606 1.22122 0.96607 0.87763 1.00531 1.59880 1.15733 1.16181 1.30628 1.19334 0.81158 0.93915 0.95925 1.21357 0.92221 1.47736 0.94417 0.91639 1.25873 0.96004 0.95035 1.02454 1.70082 0.99862 1.50644 1.36857 0.85460 0.76818 0.79150 0.79331 1.19389 1.21166 1.19115 1.19213 0.95855 0.94719 0.89400 1.21706 1.01355 1.01335 0.92983 1.21032 0.97854 0.93949 0.99063 1.20861 1.03160 0.95818 0.87671 1.98342 1.91994 1.78824 1.34472 1.20993 0.99549 1.00803 0.89393 1.19797 0.97208 0.94057 0.95755 1.20406 0.91405 0.97980 0.91742 1.59109 1.32445 1.11082 1.35271 0.93192 0.91896 0.90117 0.91180 0.95516 1.01141 0.98641 0.92707 0.86138 0.83431 0.83126 0.89527 0.95327 0.84009 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.01 71.98 0.65 -3.12 16 2 C 0.06 2.02 5.32 86.30 0.46 2.48 16 3 N -0.50 -20.48 3.50 -699.55 -2.45 -22.93 16 4 C 0.22 11.39 4.42 85.56 0.38 11.77 16 5 C -0.52 -28.25 8.56 25.60 0.22 -28.03 16 6 H 0.07 3.46 7.75 -2.91 -0.02 3.44 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 9 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 C 0.10 3.79 3.56 38.20 0.14 3.93 16 14 C -0.15 -5.23 8.80 22.40 0.20 -5.03 16 15 C -0.10 -2.88 9.82 22.27 0.22 -2.66 16 16 C -0.05 -1.35 6.32 22.34 0.14 -1.21 16 17 Cl -0.07 -1.54 28.95 -2.72 -0.08 -1.61 16 18 C -0.09 -2.52 9.45 22.27 0.21 -2.31 16 19 C -0.07 -2.19 5.41 -19.74 -0.11 -2.30 16 20 C 0.12 3.57 6.58 85.56 0.56 4.14 16 21 N -0.84 -23.16 9.61 -189.99 -1.83 -24.98 16 22 H 0.05 1.40 7.64 -2.39 -0.02 1.38 16 23 H 0.06 1.73 5.48 -2.38 -0.01 1.72 16 24 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.07 2.73 7.38 -2.38 -0.02 2.71 16 26 H 0.03 0.95 6.71 -2.39 -0.02 0.93 16 27 H -0.03 -1.63 8.01 -2.39 -0.02 -1.65 16 28 H 0.00 -0.26 7.92 -2.39 -0.02 -0.28 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.12 4.18 7.13 -2.91 -0.02 4.16 16 31 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.09 2.31 8.04 -2.39 -0.02 2.29 16 34 H 0.03 1.07 7.69 -2.39 -0.02 1.05 16 35 H 0.35 8.06 9.08 -89.70 -0.81 7.24 16 36 H 0.34 9.89 5.25 -89.70 -0.47 9.42 16 Total: -1.00 -60.31 309.56 1.30 -59.01 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.18 Total: 21.99 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.53 Total: -21.62 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.99 Total: -102.91 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.61 kcal Total: -60.31 1.30 -59.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723157322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.078 kcal (2) G-P(sol) polarization free energy of solvation -60.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds