Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1 5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 4 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 4 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 C 1.39672 * 120.00109 * 270.00105 * 3 2 1 14 14 C 1.38938 * 120.06577 * 359.97438 * 13 3 2 15 15 C 1.38087 * 119.95129 * 179.97438 * 14 13 3 16 16 C 1.38289 * 120.08722 * 359.97429 * 15 14 13 17 17 C 1.50699 * 119.93149 * 180.02562 * 16 15 14 18 18 N 1.46890 * 109.47260 * 105.00331 * 17 16 15 19 19 C 1.38383 * 120.13617 * 0.02688 * 16 15 14 20 20 Cl 1.73601 * 119.97770 * 180.02562 * 19 16 15 21 21 C 1.38239 * 120.04647 * 359.74525 * 19 16 15 22 22 H 1.09003 * 109.47121 * 300.00263 * 1 2 3 23 23 H 1.09001 * 109.47048 * 60.00241 * 1 2 3 24 24 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47298 * 239.99748 * 2 1 3 26 26 H 1.09008 * 109.46760 * 120.00016 * 2 1 3 27 27 H 1.08998 * 109.47049 * 149.99802 * 4 3 2 28 28 H 1.09001 * 109.46896 * 30.00073 * 4 3 2 29 29 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.02436 * 0.02562 * 14 13 3 31 31 H 1.08001 * 119.95944 * 179.97438 * 15 14 13 32 32 H 1.09007 * 109.46988 * 225.00540 * 17 16 15 33 33 H 1.09001 * 109.47444 * 345.00185 * 17 16 15 34 34 H 1.00901 * 111.00352 * 56.04388 * 18 17 16 35 35 H 1.00898 * 111.00798 * 179.97438 * 18 17 16 36 36 H 1.08006 * 120.04557 * 180.28261 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9948 3.5049 2.8780 8 7 -0.0995 4.1293 3.2548 9 14 2.5333 3.5968 3.9335 10 1 3.3519 4.7629 3.5147 11 1 2.1470 3.7496 5.3592 12 1 3.3240 2.3511 3.7657 13 6 2.2512 2.0396 -1.2096 14 6 2.0205 1.3858 -2.4136 15 6 2.2510 2.0392 -3.6081 16 6 2.7105 3.3435 -3.6074 17 6 2.9602 4.0535 -4.9130 18 7 1.8829 5.0215 -5.1579 19 6 2.9414 3.9982 -2.4103 20 17 3.5176 5.6358 -2.4142 21 6 2.7081 3.3509 -1.2113 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.0644 2.7985 1.1385 28 1 2.5505 1.3452 2.0284 29 1 -0.1079 4.6374 4.0811 30 1 1.6605 0.3676 -2.4153 31 1 2.0721 1.5310 -4.5441 32 1 3.9152 4.5769 -4.8651 33 1 2.9854 3.3252 -5.7237 34 1 1.7969 5.6691 -4.3889 35 1 2.0277 5.5114 -6.0280 36 1 2.8840 3.8634 -0.2769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723162889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 20.833756 kcal Electronic energy + Delta-G solvation = -18392.573758 eV Core-core repulsion = 15516.223657 eV Total energy + Delta-G solvation = -2876.350101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38927 -36.94931 -35.83574 -34.08048 -32.72419 -31.16766 -29.92389 -29.33612 -27.05645 -24.29357 -23.15858 -21.83731 -21.40661 -19.68741 -17.16095 -16.82425 -16.04112 -15.57734 -14.80932 -14.61900 -14.48257 -13.96492 -13.57723 -13.35835 -13.33118 -12.81360 -12.53824 -12.52451 -12.13751 -11.74088 -11.51407 -11.27818 -11.18085 -11.05669 -10.80834 -10.58790 -10.47503 -10.24662 -10.16666 -9.54269 -9.04673 -8.67386 -8.56081 -8.32935 -6.58118 -6.16157 -4.16246 1.70972 1.95999 2.49021 3.20321 3.27296 3.29025 3.88177 4.17613 4.30506 4.91986 5.06553 5.13452 5.27036 5.40339 5.43659 5.63048 5.69979 5.79599 5.88410 5.99262 6.03590 6.19944 6.23934 6.41516 6.53273 6.63784 6.74579 6.84440 6.89725 6.92385 7.15141 7.22622 7.49908 7.53156 7.93444 8.19031 8.46412 8.91874 9.43420 10.96573 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.006786 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.013773 B = 4125.266749 C = 5129.187388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.601 5.601 4 C 0.218 3.782 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.892 5.892 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.253 3.747 14 C -0.211 4.211 15 C -0.046 4.046 16 C -0.160 4.160 17 C 0.114 3.886 18 N -0.846 5.846 19 C 0.022 3.978 20 Cl -0.089 7.089 21 C -0.180 4.180 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.344 0.656 35 H 0.335 0.665 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -3.774 -12.468 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.305 5.305 4 C 0.097 3.903 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.530 5.530 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.145 3.855 14 C -0.234 4.234 15 C -0.066 4.066 16 C -0.163 4.163 17 C -0.016 4.016 18 N -0.377 5.377 19 C -0.006 4.006 20 Cl -0.060 7.060 21 C -0.203 4.203 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.361 -4.265 -12.086 14.308 hybrid contribution 1.350 1.104 0.871 1.950 sum 7.711 -3.161 -11.215 13.972 Atomic orbital electron populations 1.22241 0.96331 1.00639 1.03776 1.21281 0.94520 0.82791 1.01200 1.46890 1.67652 1.12344 1.03661 1.19725 0.97277 0.92671 0.80591 1.21460 0.97847 1.30695 1.07223 0.90193 1.24891 0.95864 0.94850 0.97294 1.69893 1.27207 1.32440 1.23486 0.86965 0.83946 0.79183 0.80347 1.19898 1.20946 1.19051 1.17675 0.90875 0.90551 0.86362 1.20682 1.10641 1.01034 0.91055 1.20496 0.95994 0.92895 0.97211 1.19110 1.09161 0.95467 0.92598 1.20470 0.92084 0.94598 0.94444 1.58811 1.48236 1.23006 1.07629 1.20418 1.01006 0.84851 0.94330 1.98315 1.87503 1.21366 1.98801 1.20621 1.07678 0.94527 0.97459 0.90505 0.92920 0.93147 0.91909 0.91245 0.95610 0.95243 0.92494 0.85965 0.86093 0.95024 0.90790 0.84272 0.85322 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.24 37.16 0.38 -2.45 16 2 C 0.13 2.04 5.92 -4.04 -0.02 2.02 16 3 N -0.60 -11.83 2.59 -173.12 -0.45 -12.28 16 4 C 0.22 4.94 4.02 -5.19 -0.02 4.92 16 5 C -0.53 -14.32 9.47 -34.44 -0.33 -14.65 16 6 H 0.08 2.40 7.68 -52.49 -0.40 2.00 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 9 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 C 0.25 4.81 6.55 -83.79 -0.55 4.26 16 14 C -0.21 -3.42 9.21 -39.38 -0.36 -3.78 16 15 C -0.05 -0.69 9.66 -39.62 -0.38 -1.07 16 16 C -0.16 -2.48 5.43 -104.55 -0.57 -3.05 16 17 C 0.11 1.46 6.34 -4.98 -0.03 1.43 16 18 N -0.85 -10.72 9.61 -11.41 -0.11 -10.83 16 19 C 0.02 0.38 6.22 -39.53 -0.25 0.13 16 20 Cl -0.09 -1.39 26.38 -51.86 -1.37 -2.76 16 21 C -0.18 -3.53 8.99 -39.35 -0.35 -3.88 16 22 H 0.08 1.52 7.27 -51.93 -0.38 1.15 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 26 H 0.07 1.07 7.89 -51.92 -0.41 0.66 16 27 H 0.03 0.59 5.65 -51.93 -0.29 0.30 16 28 H 0.03 0.66 6.94 -51.93 -0.36 0.30 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.12 1.74 6.14 -52.49 -0.32 1.42 16 31 H 0.12 1.47 8.00 -52.49 -0.42 1.05 16 32 H 0.03 0.39 7.58 -51.92 -0.39 0.00 16 33 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 34 H 0.34 4.65 7.55 -39.29 -0.30 4.36 16 35 H 0.33 3.31 9.08 -39.29 -0.36 2.96 16 36 H 0.14 3.00 6.15 -52.48 -0.32 2.68 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -29.14 306.94 -8.48 -37.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.70 Total: 7.76 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.58 Total: -14.17 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.22 Total: -48.88 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.37 Total: -2.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.14 -8.48 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.454 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds