Wall clock time and date at job start Mon Mar 30 2020 06:50:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46497 * 109.47309 * 2 1
4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1
5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2
6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3
7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3
8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 4
9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 4
10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5
11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5
12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5
13 13 C 1.39672 * 120.00109 * 270.00105 * 3 2 1
14 14 C 1.38938 * 120.06577 * 359.97438 * 13 3 2
15 15 C 1.38087 * 119.95129 * 179.97438 * 14 13 3
16 16 C 1.38289 * 120.08722 * 359.97429 * 15 14 13
17 17 C 1.50699 * 119.93149 * 180.02562 * 16 15 14
18 18 N 1.46890 * 109.47260 * 105.00331 * 17 16 15
19 19 C 1.38383 * 120.13617 * 0.02688 * 16 15 14
20 20 Cl 1.73601 * 119.97770 * 180.02562 * 19 16 15
21 21 C 1.38239 * 120.04647 * 359.74525 * 19 16 15
22 22 H 1.09003 * 109.47121 * 300.00263 * 1 2 3
23 23 H 1.09001 * 109.47048 * 60.00241 * 1 2 3
24 24 H 1.08998 * 109.47302 * 179.97438 * 1 2 3
25 25 H 1.08993 * 109.47298 * 239.99748 * 2 1 3
26 26 H 1.09008 * 109.46760 * 120.00016 * 2 1 3
27 27 H 1.08998 * 109.47049 * 149.99802 * 4 3 2
28 28 H 1.09001 * 109.46896 * 30.00073 * 4 3 2
29 29 H 0.97000 * 119.99706 * 179.97438 * 8 7 5
30 30 H 1.08002 * 120.02436 * 0.02562 * 14 13 3
31 31 H 1.08001 * 119.95944 * 179.97438 * 15 14 13
32 32 H 1.09007 * 109.46988 * 225.00540 * 17 16 15
33 33 H 1.09001 * 109.47444 * 345.00185 * 17 16 15
34 34 H 1.00901 * 111.00352 * 56.04388 * 18 17 16
35 35 H 1.00898 * 111.00798 * 179.97438 * 18 17 16
36 36 H 1.08006 * 120.04557 * 180.28261 * 21 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0719 1.2688
5 6 1.0066 2.7822 1.7037
6 1 0.1171 2.7287 1.0937
7 6 0.9948 3.5049 2.8780
8 7 -0.0995 4.1293 3.2548
9 14 2.5333 3.5968 3.9335
10 1 3.3519 4.7629 3.5147
11 1 2.1470 3.7496 5.3592
12 1 3.3240 2.3511 3.7657
13 6 2.2512 2.0396 -1.2096
14 6 2.0205 1.3858 -2.4136
15 6 2.2510 2.0392 -3.6081
16 6 2.7105 3.3435 -3.6074
17 6 2.9602 4.0535 -4.9130
18 7 1.8829 5.0215 -5.1579
19 6 2.9414 3.9982 -2.4103
20 17 3.5176 5.6358 -2.4142
21 6 2.7081 3.3509 -1.2113
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.8933 -0.5138 -0.8899
26 1 1.8933 -0.5139 0.8901
27 1 3.0644 2.7985 1.1385
28 1 2.5505 1.3452 2.0284
29 1 -0.1079 4.6374 4.0811
30 1 1.6605 0.3676 -2.4153
31 1 2.0721 1.5310 -4.5441
32 1 3.9152 4.5769 -4.8651
33 1 2.9854 3.3252 -5.7237
34 1 1.7969 5.6691 -4.3889
35 1 2.0277 5.5114 -6.0280
36 1 2.8840 3.8634 -0.2769
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723162889.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:28
Heat of formation + Delta-G solvation = 20.833756 kcal
Electronic energy + Delta-G solvation = -18392.573758 eV
Core-core repulsion = 15516.223657 eV
Total energy + Delta-G solvation = -2876.350101 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.104 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.38927 -36.94931 -35.83574 -34.08048 -32.72419 -31.16766 -29.92389 -29.33612
-27.05645 -24.29357 -23.15858 -21.83731 -21.40661 -19.68741 -17.16095 -16.82425
-16.04112 -15.57734 -14.80932 -14.61900 -14.48257 -13.96492 -13.57723 -13.35835
-13.33118 -12.81360 -12.53824 -12.52451 -12.13751 -11.74088 -11.51407 -11.27818
-11.18085 -11.05669 -10.80834 -10.58790 -10.47503 -10.24662 -10.16666 -9.54269
-9.04673 -8.67386 -8.56081 -8.32935 -6.58118 -6.16157 -4.16246 1.70972
1.95999 2.49021 3.20321 3.27296 3.29025 3.88177 4.17613 4.30506
4.91986 5.06553 5.13452 5.27036 5.40339 5.43659 5.63048 5.69979
5.79599 5.88410 5.99262 6.03590 6.19944 6.23934 6.41516 6.53273
6.63784 6.74579 6.84440 6.89725 6.92385 7.15141 7.22622 7.49908
7.53156 7.93444 8.19031 8.46412 8.91874 9.43420 10.96573
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.017910 B = 0.006786 C = 0.005458
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1563.013773 B = 4125.266749 C = 5129.187388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.126 3.874
3 N -0.601 5.601
4 C 0.218 3.782
5 C -0.534 4.534
6 H 0.080 0.920
7 C 0.074 3.926
8 N -0.892 5.892
9 Si 0.869 3.131
10 H -0.273 1.273
11 H -0.284 1.284
12 H -0.266 1.266
13 C 0.253 3.747
14 C -0.211 4.211
15 C -0.046 4.046
16 C -0.160 4.160
17 C 0.114 3.886
18 N -0.846 5.846
19 C 0.022 3.978
20 Cl -0.089 7.089
21 C -0.180 4.180
22 H 0.076 0.924
23 H 0.052 0.948
24 H 0.050 0.950
25 H 0.063 0.937
26 H 0.069 0.931
27 H 0.026 0.974
28 H 0.030 0.970
29 H 0.265 0.735
30 H 0.123 0.877
31 H 0.121 0.879
32 H 0.032 0.968
33 H 0.074 0.926
34 H 0.344 0.656
35 H 0.335 0.665
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.898 -3.774 -12.468 14.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.002 3.998
3 N -0.305 5.305
4 C 0.097 3.903
5 C -0.572 4.572
6 H 0.098 0.902
7 C -0.129 4.129
8 N -0.530 5.530
9 Si 0.696 3.304
10 H -0.199 1.199
11 H -0.209 1.209
12 H -0.191 1.191
13 C 0.145 3.855
14 C -0.234 4.234
15 C -0.066 4.066
16 C -0.163 4.163
17 C -0.016 4.016
18 N -0.377 5.377
19 C -0.006 4.006
20 Cl -0.060 7.060
21 C -0.203 4.203
22 H 0.095 0.905
23 H 0.071 0.929
24 H 0.069 0.931
25 H 0.081 0.919
26 H 0.088 0.912
27 H 0.044 0.956
28 H 0.048 0.952
29 H 0.075 0.925
30 H 0.140 0.860
31 H 0.139 0.861
32 H 0.050 0.950
33 H 0.092 0.908
34 H 0.157 0.843
35 H 0.147 0.853
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 6.361 -4.265 -12.086 14.308
hybrid contribution 1.350 1.104 0.871 1.950
sum 7.711 -3.161 -11.215 13.972
Atomic orbital electron populations
1.22241 0.96331 1.00639 1.03776 1.21281 0.94520 0.82791 1.01200
1.46890 1.67652 1.12344 1.03661 1.19725 0.97277 0.92671 0.80591
1.21460 0.97847 1.30695 1.07223 0.90193 1.24891 0.95864 0.94850
0.97294 1.69893 1.27207 1.32440 1.23486 0.86965 0.83946 0.79183
0.80347 1.19898 1.20946 1.19051 1.17675 0.90875 0.90551 0.86362
1.20682 1.10641 1.01034 0.91055 1.20496 0.95994 0.92895 0.97211
1.19110 1.09161 0.95467 0.92598 1.20470 0.92084 0.94598 0.94444
1.58811 1.48236 1.23006 1.07629 1.20418 1.01006 0.84851 0.94330
1.98315 1.87503 1.21366 1.98801 1.20621 1.07678 0.94527 0.97459
0.90505 0.92920 0.93147 0.91909 0.91245 0.95610 0.95243 0.92494
0.85965 0.86093 0.95024 0.90790 0.84272 0.85322 0.84235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.83 10.24 37.16 0.38 -2.45 16
2 C 0.13 2.04 5.92 -4.04 -0.02 2.02 16
3 N -0.60 -11.83 2.59 -173.12 -0.45 -12.28 16
4 C 0.22 4.94 4.02 -5.19 -0.02 4.92 16
5 C -0.53 -14.32 9.47 -34.44 -0.33 -14.65 16
6 H 0.08 2.40 7.68 -52.49 -0.40 2.00 16
7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
8 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16
9 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16
10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16
13 C 0.25 4.81 6.55 -83.79 -0.55 4.26 16
14 C -0.21 -3.42 9.21 -39.38 -0.36 -3.78 16
15 C -0.05 -0.69 9.66 -39.62 -0.38 -1.07 16
16 C -0.16 -2.48 5.43 -104.55 -0.57 -3.05 16
17 C 0.11 1.46 6.34 -4.98 -0.03 1.43 16
18 N -0.85 -10.72 9.61 -11.41 -0.11 -10.83 16
19 C 0.02 0.38 6.22 -39.53 -0.25 0.13 16
20 Cl -0.09 -1.39 26.38 -51.86 -1.37 -2.76 16
21 C -0.18 -3.53 8.99 -39.35 -0.35 -3.88 16
22 H 0.08 1.52 7.27 -51.93 -0.38 1.15 16
23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16
24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
25 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16
26 H 0.07 1.07 7.89 -51.92 -0.41 0.66 16
27 H 0.03 0.59 5.65 -51.93 -0.29 0.30 16
28 H 0.03 0.66 6.94 -51.93 -0.36 0.30 16
29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
30 H 0.12 1.74 6.14 -52.49 -0.32 1.42 16
31 H 0.12 1.47 8.00 -52.49 -0.42 1.05 16
32 H 0.03 0.39 7.58 -51.92 -0.39 0.00 16
33 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16
34 H 0.34 4.65 7.55 -39.29 -0.30 4.36 16
35 H 0.33 3.31 9.08 -39.29 -0.36 2.96 16
36 H 0.14 3.00 6.15 -52.48 -0.32 2.68 16
LS Contribution 306.94 15.07 4.63 4.63
Total: -1.00 -29.14 306.94 -8.48 -37.62
By element:
Atomic # 1 Polarization: 12.46 SS G_CDS: -4.70 Total: 7.76 kcal
Atomic # 6 Polarization: -11.59 SS G_CDS: -2.58 Total: -14.17 kcal
Atomic # 7 Polarization: -49.10 SS G_CDS: 0.22 Total: -48.88 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal
Atomic # 17 Polarization: -1.39 SS G_CDS: -1.37 Total: -2.76 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -29.14 -8.48 -37.62 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723162889.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.454 kcal
(2) G-P(sol) polarization free energy of solvation -29.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.834 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds