Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1 5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 4 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 4 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 C 1.39672 * 120.00109 * 270.00105 * 3 2 1 14 14 C 1.38938 * 120.06577 * 359.97438 * 13 3 2 15 15 C 1.38087 * 119.95129 * 179.97438 * 14 13 3 16 16 C 1.38289 * 120.08722 * 359.97429 * 15 14 13 17 17 C 1.50699 * 119.93149 * 180.02562 * 16 15 14 18 18 N 1.46890 * 109.47260 * 105.00331 * 17 16 15 19 19 C 1.38383 * 120.13617 * 0.02688 * 16 15 14 20 20 Cl 1.73601 * 119.97770 * 180.02562 * 19 16 15 21 21 C 1.38239 * 120.04647 * 359.74525 * 19 16 15 22 22 H 1.09003 * 109.47121 * 300.00263 * 1 2 3 23 23 H 1.09001 * 109.47048 * 60.00241 * 1 2 3 24 24 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47298 * 239.99748 * 2 1 3 26 26 H 1.09008 * 109.46760 * 120.00016 * 2 1 3 27 27 H 1.08998 * 109.47049 * 149.99802 * 4 3 2 28 28 H 1.09001 * 109.46896 * 30.00073 * 4 3 2 29 29 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.02436 * 0.02562 * 14 13 3 31 31 H 1.08001 * 119.95944 * 179.97438 * 15 14 13 32 32 H 1.09007 * 109.46988 * 225.00540 * 17 16 15 33 33 H 1.09001 * 109.47444 * 345.00185 * 17 16 15 34 34 H 1.00901 * 111.00352 * 56.04388 * 18 17 16 35 35 H 1.00898 * 111.00798 * 179.97438 * 18 17 16 36 36 H 1.08006 * 120.04557 * 180.28261 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9948 3.5049 2.8780 8 7 -0.0995 4.1293 3.2548 9 14 2.5333 3.5968 3.9335 10 1 3.3519 4.7629 3.5147 11 1 2.1470 3.7496 5.3592 12 1 3.3240 2.3511 3.7657 13 6 2.2512 2.0396 -1.2096 14 6 2.0205 1.3858 -2.4136 15 6 2.2510 2.0392 -3.6081 16 6 2.7105 3.3435 -3.6074 17 6 2.9602 4.0535 -4.9130 18 7 1.8829 5.0215 -5.1579 19 6 2.9414 3.9982 -2.4103 20 17 3.5176 5.6358 -2.4142 21 6 2.7081 3.3509 -1.2113 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.0644 2.7985 1.1385 28 1 2.5505 1.3452 2.0284 29 1 -0.1079 4.6374 4.0811 30 1 1.6605 0.3676 -2.4153 31 1 2.0721 1.5310 -4.5441 32 1 3.9152 4.5769 -4.8651 33 1 2.9854 3.3252 -5.7237 34 1 1.7969 5.6691 -4.3889 35 1 2.0277 5.5114 -6.0280 36 1 2.8840 3.8634 -0.2769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723162889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 2.139573 kcal Electronic energy + Delta-G solvation = -18393.384399 eV Core-core repulsion = 15516.223657 eV Total energy + Delta-G solvation = -2877.160742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72099 -38.30391 -37.13319 -35.29379 -34.67400 -32.59507 -31.22799 -30.89534 -28.64035 -25.54299 -24.77563 -23.11802 -22.90954 -21.05526 -19.05298 -18.40108 -17.33415 -16.83586 -16.34021 -16.04128 -15.68557 -15.37831 -14.97706 -14.77247 -14.65949 -14.53718 -14.11361 -13.85622 -13.46059 -13.26819 -12.99040 -12.74729 -12.52791 -12.44476 -12.40074 -12.05492 -11.97718 -11.79484 -11.68860 -11.41970 -10.80362 -10.49479 -9.65033 -9.55677 -8.31267 -8.02098 -6.35024 0.38522 0.65242 1.18682 1.33284 1.34002 1.43389 2.30475 2.44999 2.86462 3.02738 3.90138 3.93672 4.05657 4.15259 4.29001 4.39062 4.47162 4.54007 4.66706 4.73680 4.76585 4.85458 4.92407 4.94831 4.98948 5.10956 5.31802 5.44121 5.47273 5.51472 5.65035 5.89721 6.13407 6.20886 6.57331 6.63275 6.72202 6.78593 7.29296 8.85837 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.006786 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.013773 B = 4125.266749 C = 5129.187388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.614 5.614 4 C 0.229 3.771 5 C -0.526 4.526 6 H 0.032 0.968 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.241 1.241 13 C 0.228 3.772 14 C -0.203 4.203 15 C -0.042 4.042 16 C -0.156 4.156 17 C 0.115 3.885 18 N -0.854 5.854 19 C 0.010 3.990 20 Cl -0.081 7.081 21 C -0.210 4.210 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.337 0.663 35 H 0.351 0.649 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -5.394 -14.513 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.320 5.320 4 C 0.106 3.894 5 C -0.565 4.565 6 H 0.050 0.950 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.164 1.164 13 C 0.123 3.877 14 C -0.226 4.226 15 C -0.061 4.061 16 C -0.159 4.159 17 C -0.015 4.015 18 N -0.385 5.385 19 C -0.017 4.017 20 Cl -0.052 7.052 21 C -0.234 4.234 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.027 -5.902 -14.189 17.337 hybrid contribution 0.760 1.640 1.328 2.243 sum 8.787 -4.262 -12.861 16.148 Atomic orbital electron populations 1.22145 0.96997 1.01981 1.00977 1.21523 0.93877 0.81391 1.03306 1.46838 1.68890 1.13474 1.02799 1.19396 0.94807 0.92679 0.82531 1.21644 0.97992 1.30536 1.06342 0.94963 1.25807 0.99256 0.94527 0.98954 1.70061 1.29929 1.34198 1.24396 0.85855 0.79791 0.80202 0.78024 1.19590 1.20750 1.16404 1.17957 0.91944 0.90689 0.87145 1.20976 1.09385 1.01982 0.90252 1.20969 0.94306 0.92553 0.98251 1.19554 1.07413 0.95914 0.93053 1.20541 0.92265 0.95066 0.93593 1.58802 1.48250 1.23208 1.08266 1.20582 1.01269 0.85421 0.94446 1.98309 1.87374 1.20715 1.98802 1.20544 1.10194 0.95463 0.97184 0.95030 0.93893 0.89635 0.88415 0.90412 0.95708 0.94335 0.92514 0.83585 0.82302 0.94533 0.88322 0.85082 0.83462 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 10.24 71.98 0.74 -4.54 16 2 C 0.12 3.74 5.92 86.38 0.51 4.25 16 3 N -0.61 -24.06 2.59 -701.64 -1.82 -25.87 16 4 C 0.23 10.48 4.02 85.63 0.34 10.82 16 5 C -0.53 -29.53 9.47 25.60 0.24 -29.28 16 6 H 0.03 2.07 7.68 -2.92 -0.02 2.04 16 7 C 0.01 0.71 5.47 84.66 0.46 1.18 16 8 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 9 Si 0.94 42.94 27.47 68.60 1.88 44.83 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 13 C 0.23 8.59 6.55 38.21 0.25 8.84 16 14 C -0.20 -6.06 9.21 22.40 0.21 -5.85 16 15 C -0.04 -1.09 9.66 22.25 0.21 -0.88 16 16 C -0.16 -4.48 5.43 -19.82 -0.11 -4.59 16 17 C 0.12 2.59 6.34 85.56 0.54 3.13 16 18 N -0.85 -19.51 9.61 -190.02 -1.83 -21.34 16 19 C 0.01 0.36 6.22 22.30 0.14 0.50 16 20 Cl -0.08 -2.52 26.38 -2.72 -0.07 -2.59 16 21 C -0.21 -8.42 8.99 22.42 0.20 -8.22 16 22 H 0.03 1.29 7.27 -2.39 -0.02 1.27 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.10 2.33 6.20 -2.39 -0.01 2.31 16 26 H 0.08 2.25 7.89 -2.38 -0.02 2.23 16 27 H 0.03 1.15 5.65 -2.39 -0.01 1.14 16 28 H 0.04 1.70 6.94 -2.39 -0.02 1.68 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.15 3.58 6.14 -2.91 -0.02 3.56 16 31 H 0.16 2.99 8.00 -2.91 -0.02 2.97 16 32 H 0.04 0.80 7.58 -2.38 -0.02 0.78 16 33 H 0.10 1.76 7.95 -2.39 -0.02 1.74 16 34 H 0.34 8.61 7.55 -89.69 -0.68 7.94 16 35 H 0.35 6.00 9.08 -89.70 -0.81 5.19 16 36 H 0.11 4.93 6.15 -2.91 -0.02 4.91 16 Total: -1.00 -66.75 306.94 1.78 -64.97 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.44 Total: 23.20 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.74 Total: -24.65 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.34 Total: -105.75 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.07 Total: -2.59 kcal Total: -66.75 1.78 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.109 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds