Wall clock time and date at job start Mon Mar 30 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99720 * 2 1 4 4 C 1.50701 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.02668 * 260.02646 * 4 3 2 6 6 C 1.38238 * 120.08541 * 179.97438 * 5 4 3 7 7 C 1.38421 * 120.14086 * 0.02562 * 6 5 4 8 8 Cl 1.73605 * 119.97809 * 179.97438 * 7 6 5 9 9 C 1.38199 * 120.04684 * 359.71443 * 7 6 5 10 10 C 1.38904 * 120.02042 * 79.99905 * 4 3 2 11 11 N 1.39671 * 120.07190 * 0.02671 * 10 4 3 12 12 C 1.46894 * 111.00317 * 243.95267 * 11 10 4 13 13 C 1.46902 * 110.99597 * 119.99779 * 11 10 4 14 14 C 1.50706 * 109.46577 * 190.00228 * 13 11 10 15 15 H 1.07995 * 120.00167 * 359.72326 * 14 13 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 H 1.09004 * 109.47480 * 59.99825 * 1 2 3 23 23 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47111 * 299.99126 * 1 2 3 25 25 H 1.00894 * 111.00359 * 123.95950 * 2 1 3 26 26 H 1.08997 * 109.47291 * 60.00570 * 3 2 1 27 27 H 1.09005 * 109.47395 * 300.00227 * 3 2 1 28 28 H 1.07998 * 119.95123 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.92946 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.04400 * 180.28108 * 9 7 6 31 31 H 1.09007 * 109.47149 * 296.04986 * 12 11 10 32 32 H 1.09002 * 109.47016 * 56.04409 * 12 11 10 33 33 H 1.08993 * 109.47669 * 176.04422 * 12 11 10 34 34 H 1.09000 * 109.47263 * 70.00428 * 13 11 10 35 35 H 1.09001 * 109.47582 * 309.99708 * 13 11 10 36 36 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3314 -0.0006 5 6 4.1988 1.5199 1.1770 6 6 5.5807 1.4828 1.1779 7 6 6.2707 1.2574 -0.0007 8 17 8.0062 1.2124 0.0052 9 6 5.5790 1.0627 -1.1812 10 6 4.1905 1.1043 -1.1854 11 7 3.4883 0.9134 -2.3775 12 6 3.7112 -0.4377 -2.9093 13 6 3.8476 1.9355 -3.3696 14 6 2.9041 1.8514 -4.5417 15 1 2.1192 1.1096 -4.5510 16 6 3.0469 2.7174 -5.6051 17 7 2.2239 2.6436 -6.6282 18 14 4.4101 3.9944 -5.5932 19 1 5.6303 3.4218 -6.2165 20 1 3.9760 5.1890 -6.3610 21 1 4.7078 4.3876 -4.1924 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8306 -0.5262 0.7812 26 1 1.6459 1.8948 0.8900 27 1 1.6458 1.8949 -0.8900 28 1 3.6633 1.6964 2.0981 29 1 6.1231 1.6301 2.1001 30 1 6.1173 0.8823 -2.0999 31 1 4.7631 -0.5570 -3.1688 32 1 3.4372 -1.1749 -2.1546 33 1 3.0986 -0.5837 -3.7989 34 1 4.8685 1.7665 -3.7120 35 1 3.7755 2.9239 -2.9155 36 1 2.3245 3.2526 -7.3765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723162976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:46 Heat of formation + Delta-G solvation = 32.039268 kcal Electronic energy + Delta-G solvation = -18453.330952 eV Core-core repulsion = 15577.466758 eV Total energy + Delta-G solvation = -2875.864194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80642 -36.75103 -36.11206 -35.38911 -32.52510 -31.14379 -29.83043 -27.82495 -26.41722 -24.93799 -23.36449 -22.59589 -20.97025 -20.10649 -17.24851 -16.45342 -16.10921 -15.47826 -14.90062 -14.75003 -14.27048 -14.10524 -13.70829 -13.53872 -13.16979 -13.03657 -12.68883 -12.32833 -12.14138 -11.69459 -11.59275 -11.37285 -11.17898 -11.12309 -10.97409 -10.88468 -10.63644 -10.34625 -9.88344 -9.34153 -8.68514 -8.60495 -8.32667 -8.14598 -7.56798 -6.07667 -4.05344 1.28807 1.43260 2.22999 3.26936 3.34908 3.37877 3.70153 4.39967 4.59178 4.62016 4.92769 5.06013 5.16418 5.24335 5.37584 5.55272 5.58854 5.69930 5.77801 5.84572 6.09065 6.12526 6.20107 6.25309 6.34403 6.35705 6.62632 6.75014 6.80881 6.85997 7.02817 7.18492 7.57705 7.58809 7.80872 8.11100 8.63556 9.01583 9.53587 11.05100 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.007762 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.417602 B = 3606.588326 C = 5214.135507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.675 5.675 3 C 0.112 3.888 4 C -0.069 4.069 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.023 4.023 8 Cl -0.085 7.085 9 C -0.149 4.149 10 C 0.149 3.851 11 N -0.487 5.487 12 C 0.049 3.951 13 C 0.165 3.835 14 C -0.508 4.508 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.267 1.267 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.013 0.987 25 H 0.331 0.669 26 H 0.026 0.974 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.083 0.917 34 H -0.012 1.012 35 H 0.028 0.972 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -3.764 16.563 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.304 5.304 3 C -0.016 4.016 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.050 4.050 8 Cl -0.056 7.056 9 C -0.170 4.170 10 C 0.053 3.947 11 N -0.208 5.208 12 C -0.098 4.098 13 C 0.040 3.960 14 C -0.546 4.546 15 H 0.102 0.898 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.697 3.303 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.191 1.191 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.032 0.968 25 H 0.148 0.852 26 H 0.044 0.956 27 H 0.118 0.882 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.005 0.995 35 H 0.046 0.954 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.583 -3.706 15.747 16.569 hybrid contribution 1.680 1.000 0.545 2.030 sum 5.263 -2.706 16.292 17.334 Atomic orbital electron populations 1.22162 0.87778 1.01463 1.00337 1.60249 1.07288 1.13801 1.49103 1.20731 0.89603 0.89972 1.01323 1.19866 0.95934 0.99538 0.91740 1.20889 0.93158 1.00414 0.97559 1.20852 0.94186 1.03105 0.96607 1.20813 0.83681 1.05137 0.95407 1.98347 1.11297 1.97056 1.98930 1.21838 0.95489 1.02352 0.97292 1.18948 0.88672 0.94176 0.92907 1.59708 1.54252 1.04341 1.02457 1.22219 0.98656 0.88334 1.00562 1.20303 0.94898 0.90120 0.90642 1.20973 1.15117 1.18738 0.99782 0.89784 1.24857 0.95846 0.97050 0.95331 1.69885 1.37434 1.38344 1.08013 0.86942 0.82825 0.81918 0.78615 1.20256 1.21053 1.19132 0.91100 0.91816 0.96831 0.85223 0.95615 0.88228 0.85487 0.85464 0.85205 0.96869 0.92465 0.89814 0.99486 0.95392 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 60.06 0.64 1.03 16 2 N -0.68 -9.15 6.84 -122.42 -0.84 -9.99 16 3 C 0.11 1.63 5.44 -4.97 -0.03 1.60 16 4 C -0.07 -1.06 5.41 -104.41 -0.56 -1.62 16 5 C -0.10 -1.28 9.66 -39.62 -0.38 -1.66 16 6 C -0.13 -1.65 9.83 -39.51 -0.39 -2.04 16 7 C -0.02 -0.34 6.32 -39.53 -0.25 -0.59 16 8 Cl -0.08 -1.15 28.95 -51.86 -1.50 -2.65 16 9 C -0.15 -2.53 8.48 -39.35 -0.33 -2.86 16 10 C 0.15 2.66 4.65 -83.79 -0.39 2.27 16 11 N -0.49 -9.98 3.86 -180.33 -0.70 -10.68 16 12 C 0.05 0.94 9.09 60.06 0.55 1.48 16 13 C 0.17 3.95 3.38 -4.97 -0.02 3.94 16 14 C -0.51 -14.11 9.07 -34.44 -0.31 -14.42 16 15 H 0.08 2.53 7.34 -52.49 -0.39 2.15 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 18 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.33 3.89 8.81 -39.30 -0.35 3.54 16 26 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 27 H 0.10 1.75 7.79 -51.93 -0.40 1.35 16 28 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.13 2.29 7.16 -52.49 -0.38 1.91 16 31 H 0.01 0.24 7.46 -51.92 -0.39 -0.15 16 32 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 33 H 0.08 1.76 6.85 -51.93 -0.36 1.40 16 34 H -0.01 -0.30 6.91 -51.93 -0.36 -0.66 16 35 H 0.03 0.70 7.12 -51.93 -0.37 0.33 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -29.47 313.73 -8.88 -38.35 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.10 Total: 0.79 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.57 Total: -10.95 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.76 Total: -47.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.47 -8.88 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.387 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds