Wall clock time and date at job start Mon Mar 30 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99720 * 2 1 4 4 C 1.50701 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.02668 * 260.02646 * 4 3 2 6 6 C 1.38238 * 120.08541 * 179.97438 * 5 4 3 7 7 C 1.38421 * 120.14086 * 0.02562 * 6 5 4 8 8 Cl 1.73605 * 119.97809 * 179.97438 * 7 6 5 9 9 C 1.38199 * 120.04684 * 359.71443 * 7 6 5 10 10 C 1.38904 * 120.02042 * 79.99905 * 4 3 2 11 11 N 1.39671 * 120.07190 * 0.02671 * 10 4 3 12 12 C 1.46894 * 111.00317 * 243.95267 * 11 10 4 13 13 C 1.46902 * 110.99597 * 119.99779 * 11 10 4 14 14 C 1.50706 * 109.46577 * 190.00228 * 13 11 10 15 15 H 1.07995 * 120.00167 * 359.72326 * 14 13 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 H 1.09004 * 109.47480 * 59.99825 * 1 2 3 23 23 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47111 * 299.99126 * 1 2 3 25 25 H 1.00894 * 111.00359 * 123.95950 * 2 1 3 26 26 H 1.08997 * 109.47291 * 60.00570 * 3 2 1 27 27 H 1.09005 * 109.47395 * 300.00227 * 3 2 1 28 28 H 1.07998 * 119.95123 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.92946 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.04400 * 180.28108 * 9 7 6 31 31 H 1.09007 * 109.47149 * 296.04986 * 12 11 10 32 32 H 1.09002 * 109.47016 * 56.04409 * 12 11 10 33 33 H 1.08993 * 109.47669 * 176.04422 * 12 11 10 34 34 H 1.09000 * 109.47263 * 70.00428 * 13 11 10 35 35 H 1.09001 * 109.47582 * 309.99708 * 13 11 10 36 36 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3314 -0.0006 5 6 4.1988 1.5199 1.1770 6 6 5.5807 1.4828 1.1779 7 6 6.2707 1.2574 -0.0007 8 17 8.0062 1.2124 0.0052 9 6 5.5790 1.0627 -1.1812 10 6 4.1905 1.1043 -1.1854 11 7 3.4883 0.9134 -2.3775 12 6 3.7112 -0.4377 -2.9093 13 6 3.8476 1.9355 -3.3696 14 6 2.9041 1.8514 -4.5417 15 1 2.1192 1.1096 -4.5510 16 6 3.0469 2.7174 -5.6051 17 7 2.2239 2.6436 -6.6282 18 14 4.4101 3.9944 -5.5932 19 1 5.6303 3.4218 -6.2165 20 1 3.9760 5.1890 -6.3610 21 1 4.7078 4.3876 -4.1924 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8306 -0.5262 0.7812 26 1 1.6459 1.8948 0.8900 27 1 1.6458 1.8949 -0.8900 28 1 3.6633 1.6964 2.0981 29 1 6.1231 1.6301 2.1001 30 1 6.1173 0.8823 -2.0999 31 1 4.7631 -0.5570 -3.1688 32 1 3.4372 -1.1749 -2.1546 33 1 3.0986 -0.5837 -3.7989 34 1 4.8685 1.7665 -3.7120 35 1 3.7755 2.9239 -2.9155 36 1 2.3245 3.2526 -7.3765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723162976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:46 Heat of formation + Delta-G solvation = 12.520018 kcal Electronic energy + Delta-G solvation = -18454.177370 eV Core-core repulsion = 15577.466758 eV Total energy + Delta-G solvation = -2876.710612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06101 -38.00941 -37.40449 -36.49398 -34.65706 -32.25691 -31.24906 -29.67021 -27.56703 -26.48889 -24.43422 -24.19897 -22.29746 -21.54941 -19.12712 -17.91166 -17.31415 -16.67254 -16.58815 -16.12732 -15.80495 -15.30088 -15.10225 -14.73630 -14.62688 -14.45013 -14.15595 -13.89806 -13.41967 -13.15499 -13.03159 -12.76207 -12.68118 -12.52631 -12.25571 -12.11930 -12.04237 -11.89328 -11.79772 -11.49078 -10.81305 -9.85094 -9.49260 -9.19270 -9.16186 -8.29907 -6.32651 0.14188 0.27184 1.12429 1.30876 1.32607 1.42950 2.31212 2.56010 3.02101 3.14382 3.57784 3.83182 3.96236 4.08095 4.25828 4.45235 4.51902 4.58343 4.60147 4.68769 4.72498 4.78343 4.84202 4.90565 5.06629 5.14547 5.16913 5.20391 5.25761 5.45537 5.60640 5.79046 5.98695 6.15849 6.31252 6.66988 6.73434 6.79339 7.30295 8.86335 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.007762 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.417602 B = 3606.588326 C = 5214.135507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.691 5.691 3 C 0.118 3.882 4 C -0.073 4.073 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.030 4.030 8 Cl -0.075 7.075 9 C -0.163 4.163 10 C 0.115 3.885 11 N -0.492 5.492 12 C 0.058 3.942 13 C 0.180 3.820 14 C -0.511 4.511 15 H 0.044 0.956 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.255 1.255 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.345 0.655 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.113 0.887 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.054 0.946 34 H -0.014 1.014 35 H 0.021 0.979 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -3.155 19.835 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.322 5.322 3 C -0.010 4.010 4 C -0.075 4.075 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.057 4.057 8 Cl -0.046 7.046 9 C -0.184 4.184 10 C 0.020 3.980 11 N -0.212 5.212 12 C -0.089 4.089 13 C 0.055 3.945 14 C -0.549 4.549 15 H 0.063 0.937 16 C -0.183 4.183 17 N -0.584 5.584 18 Si 0.761 3.239 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.179 1.179 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.163 0.837 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.185 0.815 29 H 0.179 0.821 30 H 0.131 0.869 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.003 0.997 35 H 0.039 0.961 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.009 -3.115 19.047 19.939 hybrid contribution 1.207 0.722 -0.374 1.455 sum 6.216 -2.393 18.673 19.825 Atomic orbital electron populations 1.22122 0.86980 1.02239 1.00036 1.60153 1.08226 1.13612 1.50242 1.20578 0.89330 0.90451 1.00681 1.20039 0.96308 0.99301 0.91833 1.21266 0.93166 0.98142 0.97818 1.21274 0.94405 1.00610 0.96938 1.20919 0.84344 1.05093 0.95382 1.98351 1.10364 1.97001 1.98909 1.21688 0.95169 1.03746 0.97770 1.19000 0.89235 0.97388 0.92393 1.59519 1.55320 1.03674 1.02718 1.22095 0.98192 0.88646 0.99941 1.19959 0.93448 0.91035 0.90103 1.21162 1.14714 1.17554 1.01453 0.93734 1.25710 0.98395 0.99365 0.94844 1.70029 1.39606 1.39765 1.08973 0.85871 0.79675 0.79151 0.79249 1.19342 1.20327 1.17885 0.93626 0.90528 0.94781 0.83676 0.92774 0.92243 0.81464 0.82134 0.86856 0.96526 0.90601 0.92710 0.99683 0.96066 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.70 127.69 1.37 2.17 16 2 N -0.69 -17.80 6.84 -541.23 -3.70 -21.50 16 3 C 0.12 3.26 5.44 85.56 0.47 3.73 16 4 C -0.07 -2.08 5.41 -19.73 -0.11 -2.19 16 5 C -0.09 -1.77 9.66 22.24 0.21 -1.56 16 6 C -0.11 -2.42 9.83 22.31 0.22 -2.20 16 7 C -0.03 -0.81 6.32 22.30 0.14 -0.67 16 8 Cl -0.08 -1.85 28.95 -2.72 -0.08 -1.93 16 9 C -0.16 -5.38 8.48 22.42 0.19 -5.19 16 10 C 0.12 4.04 4.65 38.21 0.18 4.22 16 11 N -0.49 -20.69 3.86 -724.44 -2.80 -23.48 16 12 C 0.06 2.31 9.09 127.69 1.16 3.47 16 13 C 0.18 8.85 3.38 85.56 0.29 9.14 16 14 C -0.51 -29.65 9.07 25.60 0.23 -29.42 16 15 H 0.04 2.87 7.34 -2.91 -0.02 2.85 16 16 C 0.01 0.86 5.47 84.66 0.46 1.32 16 17 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 18 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.35 7.20 8.81 -89.70 -0.79 6.41 16 26 H 0.05 1.17 8.00 -2.39 -0.02 1.15 16 27 H 0.06 2.13 7.79 -2.38 -0.02 2.11 16 28 H 0.17 2.19 8.04 -2.91 -0.02 2.17 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.11 4.02 7.16 -2.91 -0.02 4.00 16 31 H 0.02 0.63 7.46 -2.38 -0.02 0.61 16 32 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 33 H 0.05 2.45 6.85 -2.39 -0.02 2.43 16 34 H -0.01 -0.71 6.91 -2.39 -0.02 -0.72 16 35 H 0.02 1.07 7.12 -2.39 -0.02 1.05 16 36 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -66.34 313.73 0.65 -65.69 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.23 Total: 10.42 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.81 Total: -17.17 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.20 Total: -103.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -66.34 0.65 -65.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.208 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds