Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.50698 * 109.46673 * 240.00060 * 2 1 3 5 5 H 1.08003 * 119.99836 * 239.99830 * 4 2 1 6 6 C 1.37875 * 120.00037 * 60.00282 * 4 2 1 7 7 N 1.31515 * 120.00177 * 359.72511 * 6 4 2 8 8 Si 1.86801 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47349 * 59.99884 * 8 6 4 10 10 H 1.48497 * 109.46993 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47213 * 299.99956 * 8 6 4 12 12 N 1.46502 * 109.47107 * 120.00269 * 2 1 3 13 13 C 1.46497 * 120.00086 * 55.32209 * 12 2 1 14 14 C 1.39666 * 119.99984 * 235.32684 * 12 2 1 15 15 C 1.38944 * 120.06774 * 5.50655 * 14 12 2 16 16 C 1.38089 * 119.94881 * 179.74511 * 15 14 12 17 17 C 1.38292 * 120.09099 * 0.53257 * 16 15 14 18 18 C 1.50697 * 119.93349 * 179.70182 * 17 16 15 19 19 N 1.46899 * 109.46810 * 260.02146 * 18 17 16 20 20 C 1.38386 * 120.13227 * 359.71995 * 17 16 15 21 21 Cl 1.73595 * 119.97403 * 180.02562 * 20 17 16 22 22 C 1.38240 * 120.04731 * 0.02562 * 20 17 16 23 23 H 1.09001 * 109.46844 * 300.00081 * 1 2 3 24 24 H 1.09000 * 109.47225 * 59.99467 * 1 2 3 25 25 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 26 26 H 0.96993 * 119.99916 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46986 * 90.00276 * 13 12 2 28 28 H 1.08999 * 109.47327 * 209.99903 * 13 12 2 29 29 H 1.09001 * 109.47361 * 330.00432 * 13 12 2 30 30 H 1.08003 * 120.02390 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.95755 * 180.22979 * 16 15 14 32 32 H 1.09003 * 109.47351 * 20.02060 * 18 17 16 33 33 H 1.09002 * 109.46927 * 140.02032 * 18 17 16 34 34 H 1.00893 * 111.00557 * 56.04769 * 19 18 17 35 35 H 1.00903 * 110.99773 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.04088 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9387 0.8269 -2.6034 8 14 2.3223 -1.1195 -4.0079 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2204 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1962 13 6 1.5820 -2.0598 1.4809 14 6 2.8999 -0.0438 2.0651 15 6 3.2253 1.2914 1.8599 16 6 4.0930 1.9301 2.7236 17 6 4.6471 1.2396 3.7861 18 6 5.5989 1.9382 4.7225 19 7 6.9808 1.5911 4.3649 20 6 4.3296 -0.0917 3.9907 21 17 5.0270 -0.9543 5.3260 22 6 3.4575 -0.7352 3.1326 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7041 1.1580 -3.4843 27 1 2.2706 -2.7649 1.0152 28 1 1.5710 -2.2210 2.5588 29 1 0.5798 -2.2125 1.0804 30 1 2.7963 1.8305 1.0282 31 1 4.3431 2.9689 2.5664 32 1 5.4626 3.0167 4.6413 33 1 5.3983 1.6227 5.7464 34 1 7.1717 1.8148 3.3998 35 1 7.6387 2.0472 4.9791 36 1 3.2101 -1.7742 3.2922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723163136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = 24.435764 kcal Electronic energy + Delta-G solvation = -18268.490265 eV Core-core repulsion = 15392.296358 eV Total energy + Delta-G solvation = -2876.193906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.30198 -36.84482 -35.77866 -34.24874 -32.81471 -30.57128 -29.80234 -28.61369 -26.05163 -25.26132 -23.67534 -22.07590 -21.03783 -19.36321 -17.05699 -16.47456 -15.93513 -15.47172 -14.78050 -14.53898 -14.33529 -13.85668 -13.72375 -13.42797 -13.06773 -12.72100 -12.57527 -12.20969 -11.58529 -11.47761 -11.27908 -11.19762 -11.06885 -10.91634 -10.73560 -10.56552 -10.35173 -10.19969 -10.03519 -9.41778 -8.85937 -8.55913 -8.51333 -8.28660 -6.54538 -6.11439 -4.24139 1.76916 1.97690 2.59088 3.23817 3.28654 3.31677 4.03003 4.20617 4.35502 4.86887 5.13614 5.16657 5.20366 5.49658 5.73510 5.74873 5.81111 5.97238 6.13513 6.16527 6.18178 6.34754 6.60126 6.67917 6.74400 6.84259 6.92661 6.97492 7.16015 7.24815 7.35492 7.53611 7.58646 7.80577 8.06671 8.22223 8.44319 8.82162 9.43267 10.88285 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.004930 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.418838 B = 5678.133659 C = 5946.012435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.602 5.602 13 C 0.098 3.902 14 C 0.254 3.746 15 C -0.197 4.197 16 C -0.054 4.054 17 C -0.172 4.172 18 C 0.116 3.884 19 N -0.842 5.842 20 C 0.043 3.957 21 Cl -0.082 7.082 22 C -0.217 4.217 23 H 0.013 0.987 24 H 0.094 0.906 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.341 0.659 35 H 0.335 0.665 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 1.189 11.660 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.305 5.305 13 C -0.046 4.046 14 C 0.144 3.856 15 C -0.219 4.219 16 C -0.074 4.074 17 C -0.175 4.175 18 C -0.014 4.014 19 N -0.372 5.372 20 C 0.016 3.984 21 Cl -0.053 7.053 22 C -0.241 4.241 23 H 0.032 0.968 24 H 0.113 0.887 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.730 0.362 11.635 12.565 hybrid contribution 0.440 0.382 -1.085 1.231 sum 5.171 0.744 10.550 11.773 Atomic orbital electron populations 1.22138 0.98243 0.99691 1.00864 1.18978 0.90984 0.93415 0.80272 0.92891 1.21368 1.31699 1.13162 0.90231 0.92286 1.24886 0.94835 0.94994 0.98975 1.69843 1.36170 1.22907 1.24001 0.86552 0.79294 0.79696 0.81877 1.20218 1.21150 1.20191 1.47284 1.45511 1.13668 1.24067 1.21463 1.00304 0.83826 0.99020 1.17811 0.88266 0.91191 0.88309 1.20941 1.04094 0.93956 1.02958 1.20621 0.95271 0.98696 0.92824 1.19100 1.04628 0.93114 1.00693 1.20457 0.87288 0.95634 0.97975 1.58684 1.03163 1.67155 1.08178 1.20272 0.96165 0.91680 0.90311 1.98314 1.83836 1.76956 1.46216 1.20393 1.04522 1.00653 0.98551 0.96819 0.88738 0.94919 0.92572 0.93897 0.93063 0.91196 0.84795 0.86351 0.95448 0.90699 0.84680 0.85297 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.85 37.16 0.33 -3.10 16 2 C 0.26 6.24 2.58 -69.08 -0.18 6.06 16 3 H 0.05 1.34 5.31 -51.93 -0.28 1.06 16 4 C -0.53 -13.70 8.44 -34.44 -0.29 -13.99 16 5 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 6 C 0.07 1.71 5.31 -17.82 -0.09 1.62 16 7 N -0.89 -23.94 11.31 55.43 0.63 -23.31 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.60 -12.47 2.89 -173.33 -0.50 -12.97 16 13 C 0.10 1.74 9.51 59.85 0.57 2.31 16 14 C 0.25 4.94 6.54 -83.79 -0.55 4.40 16 15 C -0.20 -3.68 9.31 -39.37 -0.37 -4.05 16 16 C -0.05 -0.86 9.66 -39.62 -0.38 -1.24 16 17 C -0.17 -2.64 5.40 -104.55 -0.56 -3.20 16 18 C 0.12 1.46 6.32 -4.98 -0.03 1.43 16 19 N -0.84 -9.72 9.61 -11.41 -0.11 -9.83 16 20 C 0.04 0.72 6.31 -39.53 -0.25 0.47 16 21 Cl -0.08 -1.21 27.50 -51.86 -1.43 -2.64 16 22 C -0.22 -3.83 8.94 -39.35 -0.35 -4.19 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 25 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.79 6.46 -51.93 -0.34 0.45 16 29 H 0.07 1.24 6.19 -51.93 -0.32 0.92 16 30 H 0.13 2.65 5.74 -52.48 -0.30 2.35 16 31 H 0.12 1.58 8.03 -52.48 -0.42 1.16 16 32 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 33 H 0.07 0.94 7.35 -51.93 -0.38 0.56 16 34 H 0.34 3.85 8.98 -39.30 -0.35 3.50 16 35 H 0.33 3.03 9.08 -39.29 -0.36 2.67 16 36 H 0.13 2.08 6.31 -52.49 -0.33 1.74 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -26.96 305.75 -8.52 -35.48 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.54 Total: 6.57 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.16 Total: -13.49 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.02 Total: -46.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.43 Total: -2.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.96 -8.52 -35.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.913 kcal (2) G-P(sol) polarization free energy of solvation -26.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds